Genome-wide association study of drought-related resistance traits in Aegilops tauschii

Detalhes bibliográficos
Autor(a) principal: Qin,Peng
Data de Publicação: 2016
Outros Autores: Lin,Yu, Hu,Yaodong, Liu,Kun, Mao,Shuangshuang, Li,Zhanyi, Wang,Jirui, Liu,Yaxi, Wei,Yuming, Zheng,Youliang
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398
Resumo: Abstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection.
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spelling Genome-wide association study of drought-related resistance traits in Aegilops tauschiiAegilops tauschiidrought resistancegenome-wide association studysingle nucleotide polymorphismwheatAbstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection.Sociedade Brasileira de Genética2016-09-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398Genetics and Molecular Biology v.39 n.3 2016reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/1678-4685-GMB-2015-0232info:eu-repo/semantics/openAccessQin,PengLin,YuHu,YaodongLiu,KunMao,ShuangshuangLi,ZhanyiWang,JiruiLiu,YaxiWei,YumingZheng,Youliangeng2016-08-25T00:00:00Zoai:scielo:S1415-47572016000300398Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2016-08-25T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Genome-wide association study of drought-related resistance traits in Aegilops tauschii
title Genome-wide association study of drought-related resistance traits in Aegilops tauschii
spellingShingle Genome-wide association study of drought-related resistance traits in Aegilops tauschii
Qin,Peng
Aegilops tauschii
drought resistance
genome-wide association study
single nucleotide polymorphism
wheat
title_short Genome-wide association study of drought-related resistance traits in Aegilops tauschii
title_full Genome-wide association study of drought-related resistance traits in Aegilops tauschii
title_fullStr Genome-wide association study of drought-related resistance traits in Aegilops tauschii
title_full_unstemmed Genome-wide association study of drought-related resistance traits in Aegilops tauschii
title_sort Genome-wide association study of drought-related resistance traits in Aegilops tauschii
author Qin,Peng
author_facet Qin,Peng
Lin,Yu
Hu,Yaodong
Liu,Kun
Mao,Shuangshuang
Li,Zhanyi
Wang,Jirui
Liu,Yaxi
Wei,Yuming
Zheng,Youliang
author_role author
author2 Lin,Yu
Hu,Yaodong
Liu,Kun
Mao,Shuangshuang
Li,Zhanyi
Wang,Jirui
Liu,Yaxi
Wei,Yuming
Zheng,Youliang
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Qin,Peng
Lin,Yu
Hu,Yaodong
Liu,Kun
Mao,Shuangshuang
Li,Zhanyi
Wang,Jirui
Liu,Yaxi
Wei,Yuming
Zheng,Youliang
dc.subject.por.fl_str_mv Aegilops tauschii
drought resistance
genome-wide association study
single nucleotide polymorphism
wheat
topic Aegilops tauschii
drought resistance
genome-wide association study
single nucleotide polymorphism
wheat
description Abstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection.
publishDate 2016
dc.date.none.fl_str_mv 2016-09-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-4685-GMB-2015-0232
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.39 n.3 2016
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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