Genome-wide association study of drought-related resistance traits in Aegilops tauschii
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Genetics and Molecular Biology |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398 |
Resumo: | Abstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection. |
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Genetics and Molecular Biology |
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Genome-wide association study of drought-related resistance traits in Aegilops tauschiiAegilops tauschiidrought resistancegenome-wide association studysingle nucleotide polymorphismwheatAbstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection.Sociedade Brasileira de Genética2016-09-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398Genetics and Molecular Biology v.39 n.3 2016reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/1678-4685-GMB-2015-0232info:eu-repo/semantics/openAccessQin,PengLin,YuHu,YaodongLiu,KunMao,ShuangshuangLi,ZhanyiWang,JiruiLiu,YaxiWei,YumingZheng,Youliangeng2016-08-25T00:00:00Zoai:scielo:S1415-47572016000300398Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2016-08-25T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false |
dc.title.none.fl_str_mv |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
title |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
spellingShingle |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii Qin,Peng Aegilops tauschii drought resistance genome-wide association study single nucleotide polymorphism wheat |
title_short |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
title_full |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
title_fullStr |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
title_full_unstemmed |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
title_sort |
Genome-wide association study of drought-related resistance traits in Aegilops tauschii |
author |
Qin,Peng |
author_facet |
Qin,Peng Lin,Yu Hu,Yaodong Liu,Kun Mao,Shuangshuang Li,Zhanyi Wang,Jirui Liu,Yaxi Wei,Yuming Zheng,Youliang |
author_role |
author |
author2 |
Lin,Yu Hu,Yaodong Liu,Kun Mao,Shuangshuang Li,Zhanyi Wang,Jirui Liu,Yaxi Wei,Yuming Zheng,Youliang |
author2_role |
author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Qin,Peng Lin,Yu Hu,Yaodong Liu,Kun Mao,Shuangshuang Li,Zhanyi Wang,Jirui Liu,Yaxi Wei,Yuming Zheng,Youliang |
dc.subject.por.fl_str_mv |
Aegilops tauschii drought resistance genome-wide association study single nucleotide polymorphism wheat |
topic |
Aegilops tauschii drought resistance genome-wide association study single nucleotide polymorphism wheat |
description |
Abstract The D-genome progenitor of wheat (Triticum aestivum), Aegilops tauschii, possesses numerous genes for resistance to abiotic stresses, including drought. Therefore, information on the genetic architecture of A. tauschii can aid the development of drought-resistant wheat varieties. Here, we evaluated 13 traits in 373 A. tauschii accessions grown under normal and polyethylene glycol-simulated drought stress conditions and performed a genome-wide association study using 7,185 single nucleotide polymorphism (SNP) markers. We identified 208 and 28 SNPs associated with all traits using the general linear model and mixed linear model, respectively, while both models detected 25 significant SNPs with genome-wide distribution. Public database searches revealed several candidate/flanking genes related to drought resistance that were grouped into three categories according to the type of encoded protein (enzyme, storage protein, and drought-induced protein). This study provided essential information for SNPs and genes related to drought resistance in A. tauschii and wheat, and represents a foundation for breeding drought-resistant wheat cultivars using marker-assisted selection. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-09-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300398 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/1678-4685-GMB-2015-0232 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
dc.source.none.fl_str_mv |
Genetics and Molecular Biology v.39 n.3 2016 reponame:Genetics and Molecular Biology instname:Sociedade Brasileira de Genética (SBG) instacron:SBG |
instname_str |
Sociedade Brasileira de Genética (SBG) |
instacron_str |
SBG |
institution |
SBG |
reponame_str |
Genetics and Molecular Biology |
collection |
Genetics and Molecular Biology |
repository.name.fl_str_mv |
Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG) |
repository.mail.fl_str_mv |
||editor@gmb.org.br |
_version_ |
1752122387050004480 |