D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis
Autor(a) principal: | |
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Data de Publicação: | 2009 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Genetics and Molecular Biology |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572009000300030 |
Resumo: | The web application D-Maps provides a user-friendly interface to researchers performing studies based on microarrays. The program was developed to manage and process one- or two-color microarray data obtained from several platforms (currently, GeneTAC, ScanArray, CodeLink, NimbleGen and Affymetrix). Despite the availability of many algorithms and many software programs designed to perform microarray analysis on the internet, these usually require sophisticated knowledge of mathematics, statistics and computation. D-maps was developed to overcome the requirement of high performance computers or programming experience. D-Maps performs raw data processing, normalization and statistical analysis, allowing access to the analyzed data in text or graphical format. An original feature presented by D-Maps is GEO (Gene Expression Omnibus) submission format service. The D-MaPs application was already used for analysis of oligonucleotide microarrays and PCR-spotted arrays (one- and two-color, laser and light scanner). In conclusion, D-Maps is a valuable tool for microarray research community, especially in the case of groups without a bioinformatic core. |
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Genetics and Molecular Biology |
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D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysismicroarrayweb servicesoftwareaffymetrix and nimblegenThe web application D-Maps provides a user-friendly interface to researchers performing studies based on microarrays. The program was developed to manage and process one- or two-color microarray data obtained from several platforms (currently, GeneTAC, ScanArray, CodeLink, NimbleGen and Affymetrix). Despite the availability of many algorithms and many software programs designed to perform microarray analysis on the internet, these usually require sophisticated knowledge of mathematics, statistics and computation. D-maps was developed to overcome the requirement of high performance computers or programming experience. D-Maps performs raw data processing, normalization and statistical analysis, allowing access to the analyzed data in text or graphical format. An original feature presented by D-Maps is GEO (Gene Expression Omnibus) submission format service. The D-MaPs application was already used for analysis of oligonucleotide microarrays and PCR-spotted arrays (one- and two-color, laser and light scanner). In conclusion, D-Maps is a valuable tool for microarray research community, especially in the case of groups without a bioinformatic core.Sociedade Brasileira de Genética2009-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572009000300030Genetics and Molecular Biology v.32 n.3 2009reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572009000300030info:eu-repo/semantics/openAccessCarazzolle,Marcelo F.Herig,Taís S.Deckmann,Ana C.Pereira,Gonçalo A.G.eng2009-08-10T00:00:00Zoai:scielo:S1415-47572009000300030Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2009-08-10T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false |
dc.title.none.fl_str_mv |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
title |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
spellingShingle |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis Carazzolle,Marcelo F. microarray web service software affymetrix and nimblegen |
title_short |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
title_full |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
title_fullStr |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
title_full_unstemmed |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
title_sort |
D-MaPs - DNA-microarray projects: web-based software for multi-platform microarray analysis |
author |
Carazzolle,Marcelo F. |
author_facet |
Carazzolle,Marcelo F. Herig,Taís S. Deckmann,Ana C. Pereira,Gonçalo A.G. |
author_role |
author |
author2 |
Herig,Taís S. Deckmann,Ana C. Pereira,Gonçalo A.G. |
author2_role |
author author author |
dc.contributor.author.fl_str_mv |
Carazzolle,Marcelo F. Herig,Taís S. Deckmann,Ana C. Pereira,Gonçalo A.G. |
dc.subject.por.fl_str_mv |
microarray web service software affymetrix and nimblegen |
topic |
microarray web service software affymetrix and nimblegen |
description |
The web application D-Maps provides a user-friendly interface to researchers performing studies based on microarrays. The program was developed to manage and process one- or two-color microarray data obtained from several platforms (currently, GeneTAC, ScanArray, CodeLink, NimbleGen and Affymetrix). Despite the availability of many algorithms and many software programs designed to perform microarray analysis on the internet, these usually require sophisticated knowledge of mathematics, statistics and computation. D-maps was developed to overcome the requirement of high performance computers or programming experience. D-Maps performs raw data processing, normalization and statistical analysis, allowing access to the analyzed data in text or graphical format. An original feature presented by D-Maps is GEO (Gene Expression Omnibus) submission format service. The D-MaPs application was already used for analysis of oligonucleotide microarrays and PCR-spotted arrays (one- and two-color, laser and light scanner). In conclusion, D-Maps is a valuable tool for microarray research community, especially in the case of groups without a bioinformatic core. |
publishDate |
2009 |
dc.date.none.fl_str_mv |
2009-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572009000300030 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572009000300030 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/S1415-47572009000300030 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
dc.source.none.fl_str_mv |
Genetics and Molecular Biology v.32 n.3 2009 reponame:Genetics and Molecular Biology instname:Sociedade Brasileira de Genética (SBG) instacron:SBG |
instname_str |
Sociedade Brasileira de Genética (SBG) |
instacron_str |
SBG |
institution |
SBG |
reponame_str |
Genetics and Molecular Biology |
collection |
Genetics and Molecular Biology |
repository.name.fl_str_mv |
Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG) |
repository.mail.fl_str_mv |
||editor@gmb.org.br |
_version_ |
1752122381928759296 |