Use of ridge regression for the prediction of early growth performance in crossbred calves

Detalhes bibliográficos
Autor(a) principal: Pimentel,Eduardo da Cruz Gouveia
Data de Publicação: 2007
Outros Autores: Queiroz,Sandra Aidar de, Carvalheiro,Roberto, Fries,Luiz Alberto
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000400006
Resumo: The problem of multicollinearity in regression analysis was studied. Ridge regression (RR) techniques were used to estimate parameters affecting the performance of crossbred calves raised in tropical and subtropical regions by a model including additive, dominance, joint additive or "profit heterosis" and epistatic effects and their interactions with latitude in an attempt to model genotype by environment interactions. A software was developed in Fortran 77 to perform five variant types of RR: the originally proposed method; the method implemented by SAS; and three methods of weighting the RR parameter lambda. Three mathematical criteria were tested with the aim of choosing a value for the lambda coefficient: the sum and the harmonic mean of the absolute Student t-values and the value of lambda at which all variance inflation factors (VIF) became lower than 300. Prediction surfaces obtained from estimated coefficients were used to compare the five methods and three criteria. It was concluded that RR could be a good alternative to overcome multicollinearity problems. For all the methods tested, acceptable prediction surfaces could be obtained when the VIF criterion was employed. This mathematical criterion is thus recommended as an auxiliary tool for choosing lambda.
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spelling Use of ridge regression for the prediction of early growth performance in crossbred calvescrossbreedingepistasisgenotype by environment interactionheterosismulticollinearityThe problem of multicollinearity in regression analysis was studied. Ridge regression (RR) techniques were used to estimate parameters affecting the performance of crossbred calves raised in tropical and subtropical regions by a model including additive, dominance, joint additive or "profit heterosis" and epistatic effects and their interactions with latitude in an attempt to model genotype by environment interactions. A software was developed in Fortran 77 to perform five variant types of RR: the originally proposed method; the method implemented by SAS; and three methods of weighting the RR parameter lambda. Three mathematical criteria were tested with the aim of choosing a value for the lambda coefficient: the sum and the harmonic mean of the absolute Student t-values and the value of lambda at which all variance inflation factors (VIF) became lower than 300. Prediction surfaces obtained from estimated coefficients were used to compare the five methods and three criteria. It was concluded that RR could be a good alternative to overcome multicollinearity problems. For all the methods tested, acceptable prediction surfaces could be obtained when the VIF criterion was employed. This mathematical criterion is thus recommended as an auxiliary tool for choosing lambda.Sociedade Brasileira de Genética2007-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000400006Genetics and Molecular Biology v.30 n.3 2007reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572007000400006info:eu-repo/semantics/openAccessPimentel,Eduardo da Cruz GouveiaQueiroz,Sandra Aidar deCarvalheiro,RobertoFries,Luiz Albertoeng2007-08-30T00:00:00Zoai:scielo:S1415-47572007000400006Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2007-08-30T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Use of ridge regression for the prediction of early growth performance in crossbred calves
title Use of ridge regression for the prediction of early growth performance in crossbred calves
spellingShingle Use of ridge regression for the prediction of early growth performance in crossbred calves
Pimentel,Eduardo da Cruz Gouveia
crossbreeding
epistasis
genotype by environment interaction
heterosis
multicollinearity
title_short Use of ridge regression for the prediction of early growth performance in crossbred calves
title_full Use of ridge regression for the prediction of early growth performance in crossbred calves
title_fullStr Use of ridge regression for the prediction of early growth performance in crossbred calves
title_full_unstemmed Use of ridge regression for the prediction of early growth performance in crossbred calves
title_sort Use of ridge regression for the prediction of early growth performance in crossbred calves
author Pimentel,Eduardo da Cruz Gouveia
author_facet Pimentel,Eduardo da Cruz Gouveia
Queiroz,Sandra Aidar de
Carvalheiro,Roberto
Fries,Luiz Alberto
author_role author
author2 Queiroz,Sandra Aidar de
Carvalheiro,Roberto
Fries,Luiz Alberto
author2_role author
author
author
dc.contributor.author.fl_str_mv Pimentel,Eduardo da Cruz Gouveia
Queiroz,Sandra Aidar de
Carvalheiro,Roberto
Fries,Luiz Alberto
dc.subject.por.fl_str_mv crossbreeding
epistasis
genotype by environment interaction
heterosis
multicollinearity
topic crossbreeding
epistasis
genotype by environment interaction
heterosis
multicollinearity
description The problem of multicollinearity in regression analysis was studied. Ridge regression (RR) techniques were used to estimate parameters affecting the performance of crossbred calves raised in tropical and subtropical regions by a model including additive, dominance, joint additive or "profit heterosis" and epistatic effects and their interactions with latitude in an attempt to model genotype by environment interactions. A software was developed in Fortran 77 to perform five variant types of RR: the originally proposed method; the method implemented by SAS; and three methods of weighting the RR parameter lambda. Three mathematical criteria were tested with the aim of choosing a value for the lambda coefficient: the sum and the harmonic mean of the absolute Student t-values and the value of lambda at which all variance inflation factors (VIF) became lower than 300. Prediction surfaces obtained from estimated coefficients were used to compare the five methods and three criteria. It was concluded that RR could be a good alternative to overcome multicollinearity problems. For all the methods tested, acceptable prediction surfaces could be obtained when the VIF criterion was employed. This mathematical criterion is thus recommended as an auxiliary tool for choosing lambda.
publishDate 2007
dc.date.none.fl_str_mv 2007-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000400006
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000400006
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572007000400006
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.30 n.3 2007
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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