Trimming and clustering sugarcane ESTs

Detalhes bibliográficos
Autor(a) principal: Telles,Guilherme P.
Data de Publicação: 2001
Outros Autores: Silva,Felipe R. da
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572001000100004
Resumo: The original clustering procedure adopted in the Sugarcane Expressed Sequence Tag project (SUCEST) had many problems, for instance too many clusters, the presence of ribosomal sequences, etc. We therefore redesigned the clustering procedure entirely, including a much more careful initial trimming of the reads. In this paper the new trimming and clustering strategies are described in detail and we give the new official figures for the project, 237,954 expressed sequence tags and 43,141 clusters.
id SBG-1_7a508f553f9fe381be2cf353dd0739ba
oai_identifier_str oai:scielo:S1415-47572001000100004
network_acronym_str SBG-1
network_name_str Genetics and Molecular Biology
repository_id_str
spelling Trimming and clustering sugarcane ESTsThe original clustering procedure adopted in the Sugarcane Expressed Sequence Tag project (SUCEST) had many problems, for instance too many clusters, the presence of ribosomal sequences, etc. We therefore redesigned the clustering procedure entirely, including a much more careful initial trimming of the reads. In this paper the new trimming and clustering strategies are described in detail and we give the new official figures for the project, 237,954 expressed sequence tags and 43,141 clusters.Sociedade Brasileira de Genética2001-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572001000100004Genetics and Molecular Biology v.24 n.1-4 2001reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572001000100004info:eu-repo/semantics/openAccessTelles,Guilherme P.Silva,Felipe R. daeng2002-06-27T00:00:00Zoai:scielo:S1415-47572001000100004Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2002-06-27T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Trimming and clustering sugarcane ESTs
title Trimming and clustering sugarcane ESTs
spellingShingle Trimming and clustering sugarcane ESTs
Telles,Guilherme P.
title_short Trimming and clustering sugarcane ESTs
title_full Trimming and clustering sugarcane ESTs
title_fullStr Trimming and clustering sugarcane ESTs
title_full_unstemmed Trimming and clustering sugarcane ESTs
title_sort Trimming and clustering sugarcane ESTs
author Telles,Guilherme P.
author_facet Telles,Guilherme P.
Silva,Felipe R. da
author_role author
author2 Silva,Felipe R. da
author2_role author
dc.contributor.author.fl_str_mv Telles,Guilherme P.
Silva,Felipe R. da
description The original clustering procedure adopted in the Sugarcane Expressed Sequence Tag project (SUCEST) had many problems, for instance too many clusters, the presence of ribosomal sequences, etc. We therefore redesigned the clustering procedure entirely, including a much more careful initial trimming of the reads. In this paper the new trimming and clustering strategies are described in detail and we give the new official figures for the project, 237,954 expressed sequence tags and 43,141 clusters.
publishDate 2001
dc.date.none.fl_str_mv 2001-12-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572001000100004
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572001000100004
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572001000100004
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.24 n.1-4 2001
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
_version_ 1752122378137108480

Registros relacionados