Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries

Detalhes bibliográficos
Autor(a) principal: Molina,Lorrayne Gomes
Data de Publicação: 2012
Outros Autores: Cordenonsi da Fonseca,Guilherme, Morais,Guilherme Loss de, de Oliveira,Luiz Felipe Valter, Carvalho,Joseane Biso de, Kulcheski,Franceli Rodrigues, Margis,Rogerio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200010
Resumo: A large number of small RNAs unrelated to the soybean genome were identified after deep sequencing of soybean small RNA libraries. A metatranscriptomic analysis was carried out to identify the origin of these sequences. Comparative analyses of small interference RNAs (siRNAs) present in samples collected in open areas corresponding to soybean field plantations and samples from soybean cultivated in greenhouses under a controlled environment were made. Different pathogenic, symbiotic and free-living organisms were identified from samples of both growth systems. They included viruses, bacteria and different groups of fungi. This approach can be useful not only to identify potentially unknown pathogens and pests, but also to understand the relations that soybean plants establish with microorganisms that may affect, directly or indirectly, plant health and crop production.
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spelling Metatranscriptomic analysis of small RNAs present in soybean deep sequencing librariesnext generation sequencingsmall RNAsiRNAmolecular markersA large number of small RNAs unrelated to the soybean genome were identified after deep sequencing of soybean small RNA libraries. A metatranscriptomic analysis was carried out to identify the origin of these sequences. Comparative analyses of small interference RNAs (siRNAs) present in samples collected in open areas corresponding to soybean field plantations and samples from soybean cultivated in greenhouses under a controlled environment were made. Different pathogenic, symbiotic and free-living organisms were identified from samples of both growth systems. They included viruses, bacteria and different groups of fungi. This approach can be useful not only to identify potentially unknown pathogens and pests, but also to understand the relations that soybean plants establish with microorganisms that may affect, directly or indirectly, plant health and crop production.Sociedade Brasileira de Genética2012-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200010Genetics and Molecular Biology v.35 n.1 suppl.1 2012reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572012000200010info:eu-repo/semantics/openAccessMolina,Lorrayne GomesCordenonsi da Fonseca,GuilhermeMorais,Guilherme Loss dede Oliveira,Luiz Felipe ValterCarvalho,Joseane Biso deKulcheski,Franceli RodriguesMargis,Rogerioeng2012-06-01T00:00:00Zoai:scielo:S1415-47572012000200010Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2012-06-01T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
title Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
spellingShingle Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
Molina,Lorrayne Gomes
next generation sequencing
small RNA
siRNA
molecular markers
title_short Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
title_full Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
title_fullStr Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
title_full_unstemmed Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
title_sort Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries
author Molina,Lorrayne Gomes
author_facet Molina,Lorrayne Gomes
Cordenonsi da Fonseca,Guilherme
Morais,Guilherme Loss de
de Oliveira,Luiz Felipe Valter
Carvalho,Joseane Biso de
Kulcheski,Franceli Rodrigues
Margis,Rogerio
author_role author
author2 Cordenonsi da Fonseca,Guilherme
Morais,Guilherme Loss de
de Oliveira,Luiz Felipe Valter
Carvalho,Joseane Biso de
Kulcheski,Franceli Rodrigues
Margis,Rogerio
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Molina,Lorrayne Gomes
Cordenonsi da Fonseca,Guilherme
Morais,Guilherme Loss de
de Oliveira,Luiz Felipe Valter
Carvalho,Joseane Biso de
Kulcheski,Franceli Rodrigues
Margis,Rogerio
dc.subject.por.fl_str_mv next generation sequencing
small RNA
siRNA
molecular markers
topic next generation sequencing
small RNA
siRNA
molecular markers
description A large number of small RNAs unrelated to the soybean genome were identified after deep sequencing of soybean small RNA libraries. A metatranscriptomic analysis was carried out to identify the origin of these sequences. Comparative analyses of small interference RNAs (siRNAs) present in samples collected in open areas corresponding to soybean field plantations and samples from soybean cultivated in greenhouses under a controlled environment were made. Different pathogenic, symbiotic and free-living organisms were identified from samples of both growth systems. They included viruses, bacteria and different groups of fungi. This approach can be useful not only to identify potentially unknown pathogens and pests, but also to understand the relations that soybean plants establish with microorganisms that may affect, directly or indirectly, plant health and crop production.
publishDate 2012
dc.date.none.fl_str_mv 2012-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200010
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200010
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572012000200010
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.35 n.1 suppl.1 2012
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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