Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil

Detalhes bibliográficos
Autor(a) principal: Silva,Daniela de Melo e
Data de Publicação: 2007
Outros Autores: Cruz,Aparecido Divino da, Bastos,Rogério Pereira, Reis,Raquel Loren, Telles,Mariana Pires de Campos, Diniz-Filho,José Alexandre Felizola
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000600022
Resumo: This study reports on 156 specimens of the amphibian Eupemphix nattereri, a widely distributed leiuperid, obtained from 11 municipalities of central Brazil. The extent of genetic variation was quantified by determining the mean number of alleles per locus and the proportion of polymorphic loci. An analysis of molecular variance (AMOVA) was performed on the random amplified polymorphic DNA (RAPD) haplotypes. The genetic distances obtained by calculating pairwise phist among local samples were used to determine population relationships using the unweighted pair-group method (UPGMA) and non-metric multidimensional scaling (NMDS). The cophenetic correlation was calculated to confirm agreement between the genetic matrix and the unweighted pair group method with averages (UPGMA) dendrogram. To determine if genetic distances were correlated to geographical distances we constructed pairwise genetic distance and geographical distance matrices and compared them using the Mantel test. The AMOVA results indicated significant genetic differences (p < 0.001) between E. nattereri populations, representing 69.5% of the within population genetic diversity. The Mantel test showed no significant correlation (r = 0.03; p = 0.45) between the genetic and geographical distance matrices. Our findings indicate that the genetic variation of E. nattereri populations was randomly distributed in geographic space and that gene flow for this species is probably structured at spatial scales smaller than those between our samples
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spelling Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central BrazilEupemphix nattererigene flowpopulation structureRAPD markersThis study reports on 156 specimens of the amphibian Eupemphix nattereri, a widely distributed leiuperid, obtained from 11 municipalities of central Brazil. The extent of genetic variation was quantified by determining the mean number of alleles per locus and the proportion of polymorphic loci. An analysis of molecular variance (AMOVA) was performed on the random amplified polymorphic DNA (RAPD) haplotypes. The genetic distances obtained by calculating pairwise phist among local samples were used to determine population relationships using the unweighted pair-group method (UPGMA) and non-metric multidimensional scaling (NMDS). The cophenetic correlation was calculated to confirm agreement between the genetic matrix and the unweighted pair group method with averages (UPGMA) dendrogram. To determine if genetic distances were correlated to geographical distances we constructed pairwise genetic distance and geographical distance matrices and compared them using the Mantel test. The AMOVA results indicated significant genetic differences (p < 0.001) between E. nattereri populations, representing 69.5% of the within population genetic diversity. The Mantel test showed no significant correlation (r = 0.03; p = 0.45) between the genetic and geographical distance matrices. Our findings indicate that the genetic variation of E. nattereri populations was randomly distributed in geographic space and that gene flow for this species is probably structured at spatial scales smaller than those between our samplesSociedade Brasileira de Genética2007-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000600022Genetics and Molecular Biology v.30 n.4 2007reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572007000600022info:eu-repo/semantics/openAccessSilva,Daniela de Melo eCruz,Aparecido Divino daBastos,Rogério PereiraReis,Raquel LorenTelles,Mariana Pires de CamposDiniz-Filho,José Alexandre Felizolaeng2007-12-13T00:00:00Zoai:scielo:S1415-47572007000600022Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2007-12-13T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
title Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
spellingShingle Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
Silva,Daniela de Melo e
Eupemphix nattereri
gene flow
population structure
RAPD markers
title_short Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
title_full Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
title_fullStr Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
title_full_unstemmed Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
title_sort Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil
author Silva,Daniela de Melo e
author_facet Silva,Daniela de Melo e
Cruz,Aparecido Divino da
Bastos,Rogério Pereira
Reis,Raquel Loren
Telles,Mariana Pires de Campos
Diniz-Filho,José Alexandre Felizola
author_role author
author2 Cruz,Aparecido Divino da
Bastos,Rogério Pereira
Reis,Raquel Loren
Telles,Mariana Pires de Campos
Diniz-Filho,José Alexandre Felizola
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Silva,Daniela de Melo e
Cruz,Aparecido Divino da
Bastos,Rogério Pereira
Reis,Raquel Loren
Telles,Mariana Pires de Campos
Diniz-Filho,José Alexandre Felizola
dc.subject.por.fl_str_mv Eupemphix nattereri
gene flow
population structure
RAPD markers
topic Eupemphix nattereri
gene flow
population structure
RAPD markers
description This study reports on 156 specimens of the amphibian Eupemphix nattereri, a widely distributed leiuperid, obtained from 11 municipalities of central Brazil. The extent of genetic variation was quantified by determining the mean number of alleles per locus and the proportion of polymorphic loci. An analysis of molecular variance (AMOVA) was performed on the random amplified polymorphic DNA (RAPD) haplotypes. The genetic distances obtained by calculating pairwise phist among local samples were used to determine population relationships using the unweighted pair-group method (UPGMA) and non-metric multidimensional scaling (NMDS). The cophenetic correlation was calculated to confirm agreement between the genetic matrix and the unweighted pair group method with averages (UPGMA) dendrogram. To determine if genetic distances were correlated to geographical distances we constructed pairwise genetic distance and geographical distance matrices and compared them using the Mantel test. The AMOVA results indicated significant genetic differences (p < 0.001) between E. nattereri populations, representing 69.5% of the within population genetic diversity. The Mantel test showed no significant correlation (r = 0.03; p = 0.45) between the genetic and geographical distance matrices. Our findings indicate that the genetic variation of E. nattereri populations was randomly distributed in geographic space and that gene flow for this species is probably structured at spatial scales smaller than those between our samples
publishDate 2007
dc.date.none.fl_str_mv 2007-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000600022
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000600022
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572007000600022
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.30 n.4 2007
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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