Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)

Detalhes bibliográficos
Autor(a) principal: Vilaça,Sibelle T.
Data de Publicação: 2019
Outros Autores: Santos,Fabricio R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000500201
Resumo: Abstract The Florida manatee (Trichechus manatus latirostris) is an endangered subspecies of the West Indian manatee (T. manatus), which inhabits inland and marine waters of southeastern United States. In this study, we assembled the mitochondrial genome (mtDNA) of the Florida manatee from whole genome shotgun reads. As a result, we show that the currently annotated T. manatus mtDNA belongs to a different species, the Amazonian manatee (T. inunguis). The newly assembled Florida manatee mtDNA is 16,881 bp in length, with 13 protein-coding genes, two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and one non-coding control region (D-loop). Phylogenetic analysis based on the control region indicates the newly assembled mtDNA is haplotype A01, characteristic of T. m. latirostris, while the current mtDNA associated with the Florida manatee genome assembly has a Ti02 haplotype that is found in Amazonian manatees and hybrids.
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spelling Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)Trichechus manatusFlorida manateeAmazonian manateemitochondrial genomeAbstract The Florida manatee (Trichechus manatus latirostris) is an endangered subspecies of the West Indian manatee (T. manatus), which inhabits inland and marine waters of southeastern United States. In this study, we assembled the mitochondrial genome (mtDNA) of the Florida manatee from whole genome shotgun reads. As a result, we show that the currently annotated T. manatus mtDNA belongs to a different species, the Amazonian manatee (T. inunguis). The newly assembled Florida manatee mtDNA is 16,881 bp in length, with 13 protein-coding genes, two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and one non-coding control region (D-loop). Phylogenetic analysis based on the control region indicates the newly assembled mtDNA is haplotype A01, characteristic of T. m. latirostris, while the current mtDNA associated with the Florida manatee genome assembly has a Ti02 haplotype that is found in Amazonian manatees and hybrids.Sociedade Brasileira de Genética2019-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000500201Genetics and Molecular Biology v.42 n.4 2019reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/1678-4685-gmb-2019-0210info:eu-repo/semantics/openAccessVilaça,Sibelle T.Santos,Fabricio R.eng2020-03-02T00:00:00Zoai:scielo:S1415-47572019000500201Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2020-03-02T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
title Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
spellingShingle Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
Vilaça,Sibelle T.
Trichechus manatus
Florida manatee
Amazonian manatee
mitochondrial genome
title_short Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
title_full Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
title_fullStr Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
title_full_unstemmed Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
title_sort Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia)
author Vilaça,Sibelle T.
author_facet Vilaça,Sibelle T.
Santos,Fabricio R.
author_role author
author2 Santos,Fabricio R.
author2_role author
dc.contributor.author.fl_str_mv Vilaça,Sibelle T.
Santos,Fabricio R.
dc.subject.por.fl_str_mv Trichechus manatus
Florida manatee
Amazonian manatee
mitochondrial genome
topic Trichechus manatus
Florida manatee
Amazonian manatee
mitochondrial genome
description Abstract The Florida manatee (Trichechus manatus latirostris) is an endangered subspecies of the West Indian manatee (T. manatus), which inhabits inland and marine waters of southeastern United States. In this study, we assembled the mitochondrial genome (mtDNA) of the Florida manatee from whole genome shotgun reads. As a result, we show that the currently annotated T. manatus mtDNA belongs to a different species, the Amazonian manatee (T. inunguis). The newly assembled Florida manatee mtDNA is 16,881 bp in length, with 13 protein-coding genes, two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and one non-coding control region (D-loop). Phylogenetic analysis based on the control region indicates the newly assembled mtDNA is haplotype A01, characteristic of T. m. latirostris, while the current mtDNA associated with the Florida manatee genome assembly has a Ti02 haplotype that is found in Amazonian manatees and hybrids.
publishDate 2019
dc.date.none.fl_str_mv 2019-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000500201
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000500201
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-4685-gmb-2019-0210
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.42 n.4 2019
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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