Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae)
Autor(a) principal: | |
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Data de Publicação: | 2008 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Genetics and Molecular Biology |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000400027 |
Resumo: | The Black Bridged Leaf Turtle, Cyclemys atripons (Testudines; Cryptodira; Geoemydidae), is a poorly known species within the genus Cyclemys. We determined the complete nucleotide sequence of the Cyclemys atripons mitochondrial genome (mtDNA) and found it to be 16,500 base pairs (bp) in length, with the genome organization, gene order and base composition being identical to that of the typical vertebrate. However, unlike for most turtle mtDNA so far reported, an extra base was not found in the NADH3 gene. The C. atripons control region of mtDNA was 981 bp long. Comparisons with three other geoemydids showed that the C. atripons control region contained a highly variable region at the 3' end composed of AT enriched tandem repeats containing a fifteen-unit 5'-A (AT)3-3' variable number of tandem repeats (VNTRs). |
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Genetics and Molecular Biology |
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Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae)control regionCyclemys atriponsmitochondrial genometandem repeatsThe Black Bridged Leaf Turtle, Cyclemys atripons (Testudines; Cryptodira; Geoemydidae), is a poorly known species within the genus Cyclemys. We determined the complete nucleotide sequence of the Cyclemys atripons mitochondrial genome (mtDNA) and found it to be 16,500 base pairs (bp) in length, with the genome organization, gene order and base composition being identical to that of the typical vertebrate. However, unlike for most turtle mtDNA so far reported, an extra base was not found in the NADH3 gene. The C. atripons control region of mtDNA was 981 bp long. Comparisons with three other geoemydids showed that the C. atripons control region contained a highly variable region at the 3' end composed of AT enriched tandem repeats containing a fifteen-unit 5'-A (AT)3-3' variable number of tandem repeats (VNTRs).Sociedade Brasileira de Genética2008-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000400027Genetics and Molecular Biology v.31 n.3 2008reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572008000400027info:eu-repo/semantics/openAccessZhang,LiNie,Liu-wangZhang,YingRui,Jin-longZhang,Yan-yuneng2008-08-19T00:00:00Zoai:scielo:S1415-47572008000400027Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2008-08-19T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false |
dc.title.none.fl_str_mv |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
title |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
spellingShingle |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) Zhang,Li control region Cyclemys atripons mitochondrial genome tandem repeats |
title_short |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
title_full |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
title_fullStr |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
title_full_unstemmed |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
title_sort |
Complete sequence and organization of the mitochondrial genome of Cyclemys atripons (Testudines, Geoemydidae) |
author |
Zhang,Li |
author_facet |
Zhang,Li Nie,Liu-wang Zhang,Ying Rui,Jin-long Zhang,Yan-yun |
author_role |
author |
author2 |
Nie,Liu-wang Zhang,Ying Rui,Jin-long Zhang,Yan-yun |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Zhang,Li Nie,Liu-wang Zhang,Ying Rui,Jin-long Zhang,Yan-yun |
dc.subject.por.fl_str_mv |
control region Cyclemys atripons mitochondrial genome tandem repeats |
topic |
control region Cyclemys atripons mitochondrial genome tandem repeats |
description |
The Black Bridged Leaf Turtle, Cyclemys atripons (Testudines; Cryptodira; Geoemydidae), is a poorly known species within the genus Cyclemys. We determined the complete nucleotide sequence of the Cyclemys atripons mitochondrial genome (mtDNA) and found it to be 16,500 base pairs (bp) in length, with the genome organization, gene order and base composition being identical to that of the typical vertebrate. However, unlike for most turtle mtDNA so far reported, an extra base was not found in the NADH3 gene. The C. atripons control region of mtDNA was 981 bp long. Comparisons with three other geoemydids showed that the C. atripons control region contained a highly variable region at the 3' end composed of AT enriched tandem repeats containing a fifteen-unit 5'-A (AT)3-3' variable number of tandem repeats (VNTRs). |
publishDate |
2008 |
dc.date.none.fl_str_mv |
2008-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000400027 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000400027 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/S1415-47572008000400027 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
publisher.none.fl_str_mv |
Sociedade Brasileira de Genética |
dc.source.none.fl_str_mv |
Genetics and Molecular Biology v.31 n.3 2008 reponame:Genetics and Molecular Biology instname:Sociedade Brasileira de Genética (SBG) instacron:SBG |
instname_str |
Sociedade Brasileira de Genética (SBG) |
instacron_str |
SBG |
institution |
SBG |
reponame_str |
Genetics and Molecular Biology |
collection |
Genetics and Molecular Biology |
repository.name.fl_str_mv |
Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG) |
repository.mail.fl_str_mv |
||editor@gmb.org.br |
_version_ |
1752122381485211648 |