Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture

Detalhes bibliográficos
Autor(a) principal: Pamboukian,Celso R. Denser
Data de Publicação: 2002
Outros Autores: Guimarães,Luciana M., Facciotti,Maria Cândida R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Brazilian Journal of Microbiology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822002000100003
Resumo: The morphology of Streptomyces olindensis (producer of retamycin, an antitumor antibiotic) grown in submerged culture was assessed by image analysis. The morphology was differentiated into four classes: pellets, clumps (or entangled filaments), branched and unbranched free filaments. Four morphological parameters were initially considered (area, convex area, perimeter, and convex perimeter) but only two parameters (perimeter and convex perimeter) were chosen to automatically classify the cells into the four morphological classes, using histogram analysis. Each morphological class was evaluated during growth carried out in liquid media in fermenter or shaker. It was found that pellets and clumps dominated in early growth stages in fermenter (due to the inoculum coming from a shaker cultivation) and that during cultivation, the breakage of pellets and clumps caused an increase in the percentage of free filaments. The criteria of morphological classification by image analysis proposed were useful to quantify the percentage of each morphological class during fermentations and may help to establish correlations between antibiotic production and microorganism morphology.
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spelling Applications of image analysis in the characterization of Streptomyces olindensis in submerged cultureStreptomyces olindensisimage analysismorphologyThe morphology of Streptomyces olindensis (producer of retamycin, an antitumor antibiotic) grown in submerged culture was assessed by image analysis. The morphology was differentiated into four classes: pellets, clumps (or entangled filaments), branched and unbranched free filaments. Four morphological parameters were initially considered (area, convex area, perimeter, and convex perimeter) but only two parameters (perimeter and convex perimeter) were chosen to automatically classify the cells into the four morphological classes, using histogram analysis. Each morphological class was evaluated during growth carried out in liquid media in fermenter or shaker. It was found that pellets and clumps dominated in early growth stages in fermenter (due to the inoculum coming from a shaker cultivation) and that during cultivation, the breakage of pellets and clumps caused an increase in the percentage of free filaments. The criteria of morphological classification by image analysis proposed were useful to quantify the percentage of each morphological class during fermentations and may help to establish correlations between antibiotic production and microorganism morphology.Sociedade Brasileira de Microbiologia2002-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822002000100003Brazilian Journal of Microbiology v.33 n.1 2002reponame:Brazilian Journal of Microbiologyinstname:Sociedade Brasileira de Microbiologia (SBM)instacron:SBM10.1590/S1517-83822002000100003info:eu-repo/semantics/openAccessPamboukian,Celso R. DenserGuimarães,Luciana M.Facciotti,Maria Cândida R.eng2002-09-16T00:00:00Zoai:scielo:S1517-83822002000100003Revistahttps://www.scielo.br/j/bjm/ONGhttps://old.scielo.br/oai/scielo-oai.phpbjm@sbmicrobiologia.org.br||mbmartin@usp.br1678-44051517-8382opendoar:2002-09-16T00:00Brazilian Journal of Microbiology - Sociedade Brasileira de Microbiologia (SBM)false
dc.title.none.fl_str_mv Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
title Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
spellingShingle Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
Pamboukian,Celso R. Denser
Streptomyces olindensis
image analysis
morphology
title_short Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
title_full Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
title_fullStr Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
title_full_unstemmed Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
title_sort Applications of image analysis in the characterization of Streptomyces olindensis in submerged culture
author Pamboukian,Celso R. Denser
author_facet Pamboukian,Celso R. Denser
Guimarães,Luciana M.
Facciotti,Maria Cândida R.
author_role author
author2 Guimarães,Luciana M.
Facciotti,Maria Cândida R.
author2_role author
author
dc.contributor.author.fl_str_mv Pamboukian,Celso R. Denser
Guimarães,Luciana M.
Facciotti,Maria Cândida R.
dc.subject.por.fl_str_mv Streptomyces olindensis
image analysis
morphology
topic Streptomyces olindensis
image analysis
morphology
description The morphology of Streptomyces olindensis (producer of retamycin, an antitumor antibiotic) grown in submerged culture was assessed by image analysis. The morphology was differentiated into four classes: pellets, clumps (or entangled filaments), branched and unbranched free filaments. Four morphological parameters were initially considered (area, convex area, perimeter, and convex perimeter) but only two parameters (perimeter and convex perimeter) were chosen to automatically classify the cells into the four morphological classes, using histogram analysis. Each morphological class was evaluated during growth carried out in liquid media in fermenter or shaker. It was found that pellets and clumps dominated in early growth stages in fermenter (due to the inoculum coming from a shaker cultivation) and that during cultivation, the breakage of pellets and clumps caused an increase in the percentage of free filaments. The criteria of morphological classification by image analysis proposed were useful to quantify the percentage of each morphological class during fermentations and may help to establish correlations between antibiotic production and microorganism morphology.
publishDate 2002
dc.date.none.fl_str_mv 2002-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822002000100003
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822002000100003
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1517-83822002000100003
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Microbiologia
publisher.none.fl_str_mv Sociedade Brasileira de Microbiologia
dc.source.none.fl_str_mv Brazilian Journal of Microbiology v.33 n.1 2002
reponame:Brazilian Journal of Microbiology
instname:Sociedade Brasileira de Microbiologia (SBM)
instacron:SBM
instname_str Sociedade Brasileira de Microbiologia (SBM)
instacron_str SBM
institution SBM
reponame_str Brazilian Journal of Microbiology
collection Brazilian Journal of Microbiology
repository.name.fl_str_mv Brazilian Journal of Microbiology - Sociedade Brasileira de Microbiologia (SBM)
repository.mail.fl_str_mv bjm@sbmicrobiologia.org.br||mbmartin@usp.br
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