Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense

Detalhes bibliográficos
Autor(a) principal: Ntushelo,Khayalethu
Data de Publicação: 2017
Outros Autores: Mafofo,Joseph
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Brazilian Journal of Microbiology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822017000100011
Resumo: Abstract The draft genome of Pectobacterium carotovorum subsp. brasiliense (Pcb) which causes blackleg of potato was submitted to the NCBI and released with reference number NZ_LGRF00000000.1. The estimated genome size based on the draft genome assembly is 4,820,279 bp from 33 contigs ranging in length from 444 to 1,660,019 nucleotides. The genome annotation showed 4250 putative genes, 4114 CDS and 43 pseudo-genes. Three complete rRNA gene species were detected: nine 5S, one 16S and one 23S. Other partial rRNA gene fragments were also identified, nine 16S rRNA and three 23S rRNA. A total of 69 tRNA genes and one ncRNA gene were also annotated in this genome.
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spelling Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliensePectobacterium carotovorum subsp. brasiliensisGenome sequencingIlluminaAbstract The draft genome of Pectobacterium carotovorum subsp. brasiliense (Pcb) which causes blackleg of potato was submitted to the NCBI and released with reference number NZ_LGRF00000000.1. The estimated genome size based on the draft genome assembly is 4,820,279 bp from 33 contigs ranging in length from 444 to 1,660,019 nucleotides. The genome annotation showed 4250 putative genes, 4114 CDS and 43 pseudo-genes. Three complete rRNA gene species were detected: nine 5S, one 16S and one 23S. Other partial rRNA gene fragments were also identified, nine 16S rRNA and three 23S rRNA. A total of 69 tRNA genes and one ncRNA gene were also annotated in this genome.Sociedade Brasileira de Microbiologia2017-03-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822017000100011Brazilian Journal of Microbiology v.48 n.1 2017reponame:Brazilian Journal of Microbiologyinstname:Sociedade Brasileira de Microbiologia (SBM)instacron:SBM10.1016/j.bjm.2016.06.016info:eu-repo/semantics/openAccessNtushelo,KhayalethuMafofo,Josepheng2017-01-24T00:00:00Zoai:scielo:S1517-83822017000100011Revistahttps://www.scielo.br/j/bjm/ONGhttps://old.scielo.br/oai/scielo-oai.phpbjm@sbmicrobiologia.org.br||mbmartin@usp.br1678-44051517-8382opendoar:2017-01-24T00:00Brazilian Journal of Microbiology - Sociedade Brasileira de Microbiologia (SBM)false
dc.title.none.fl_str_mv Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
title Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
spellingShingle Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
Ntushelo,Khayalethu
Pectobacterium carotovorum subsp. brasiliensis
Genome sequencing
Illumina
title_short Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
title_full Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
title_fullStr Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
title_full_unstemmed Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
title_sort Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
author Ntushelo,Khayalethu
author_facet Ntushelo,Khayalethu
Mafofo,Joseph
author_role author
author2 Mafofo,Joseph
author2_role author
dc.contributor.author.fl_str_mv Ntushelo,Khayalethu
Mafofo,Joseph
dc.subject.por.fl_str_mv Pectobacterium carotovorum subsp. brasiliensis
Genome sequencing
Illumina
topic Pectobacterium carotovorum subsp. brasiliensis
Genome sequencing
Illumina
description Abstract The draft genome of Pectobacterium carotovorum subsp. brasiliense (Pcb) which causes blackleg of potato was submitted to the NCBI and released with reference number NZ_LGRF00000000.1. The estimated genome size based on the draft genome assembly is 4,820,279 bp from 33 contigs ranging in length from 444 to 1,660,019 nucleotides. The genome annotation showed 4250 putative genes, 4114 CDS and 43 pseudo-genes. Three complete rRNA gene species were detected: nine 5S, one 16S and one 23S. Other partial rRNA gene fragments were also identified, nine 16S rRNA and three 23S rRNA. A total of 69 tRNA genes and one ncRNA gene were also annotated in this genome.
publishDate 2017
dc.date.none.fl_str_mv 2017-03-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822017000100011
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822017000100011
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1016/j.bjm.2016.06.016
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Microbiologia
publisher.none.fl_str_mv Sociedade Brasileira de Microbiologia
dc.source.none.fl_str_mv Brazilian Journal of Microbiology v.48 n.1 2017
reponame:Brazilian Journal of Microbiology
instname:Sociedade Brasileira de Microbiologia (SBM)
instacron:SBM
instname_str Sociedade Brasileira de Microbiologia (SBM)
instacron_str SBM
institution SBM
reponame_str Brazilian Journal of Microbiology
collection Brazilian Journal of Microbiology
repository.name.fl_str_mv Brazilian Journal of Microbiology - Sociedade Brasileira de Microbiologia (SBM)
repository.mail.fl_str_mv bjm@sbmicrobiologia.org.br||mbmartin@usp.br
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