A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction

Detalhes bibliográficos
Autor(a) principal: Santos,Marcus V. P. dos
Data de Publicação: 2009
Outros Autores: Teixeira,Erico S., Longo,Ricardo L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Journal of the Brazilian Chemical Society (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000400009
Resumo: The dynamics of dehydration of the protonated (R)-3,3-dimethylbutan-2-ol (pinacolyl alcohol), [(CH3)3C-CH(OH2)CH3]+, and of ethene + 1,3-butadiene cycloaddition were studied with the Born-Oppenheimer molecular dynamics (BOMD) technique for direct dynamics using the AM1 method. More than 10,000 trajectories were generated, most of them related to the unexplored simulated annealing/fragmentation approach. The AM1 potential energy surface (PES) for the protonated pinacolyl alcohol presents two transition states related to the [(CH3)3C-CHCH3]+hhhOH2 intermediate complex and to CH3 migration leading to the [(CH3)2C-CH(CH)3]2+hhhOH2 product complex. Direct dynamics yielded negligible trajectories involving these complexes, since the momentum acquired by the H2O fragment led to a complete dissociation. Thus, rearrangement of the secondary carbocation [(CH3)3C-CHCH3]+ was practically inexistent during the dynamics. Despite the concerted path (H2O dissociation and CH3 migration) not being an IRC (intrinsic reaction coordinate) path in AM1-PES, a statistically significant number of trajectories involved this path. As for the Diels-Alder reaction, even when started from a symmetric transition state using the spin restricted AM1 wavefunction, the dynamics yielded a significant number of trajectories that followed asymmetric, i.e.non-IRC, paths toward cyclohexene, independent of the initialization approach. It is noteworthy that all these asymmetric path trajectories led to a concerted reaction mechanism.
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spelling A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reactionprotonated pinacolylethene + 1,3-butadienecycloadditionnon-IRCThe dynamics of dehydration of the protonated (R)-3,3-dimethylbutan-2-ol (pinacolyl alcohol), [(CH3)3C-CH(OH2)CH3]+, and of ethene + 1,3-butadiene cycloaddition were studied with the Born-Oppenheimer molecular dynamics (BOMD) technique for direct dynamics using the AM1 method. More than 10,000 trajectories were generated, most of them related to the unexplored simulated annealing/fragmentation approach. The AM1 potential energy surface (PES) for the protonated pinacolyl alcohol presents two transition states related to the [(CH3)3C-CHCH3]+hhhOH2 intermediate complex and to CH3 migration leading to the [(CH3)2C-CH(CH)3]2+hhhOH2 product complex. Direct dynamics yielded negligible trajectories involving these complexes, since the momentum acquired by the H2O fragment led to a complete dissociation. Thus, rearrangement of the secondary carbocation [(CH3)3C-CHCH3]+ was practically inexistent during the dynamics. Despite the concerted path (H2O dissociation and CH3 migration) not being an IRC (intrinsic reaction coordinate) path in AM1-PES, a statistically significant number of trajectories involved this path. As for the Diels-Alder reaction, even when started from a symmetric transition state using the spin restricted AM1 wavefunction, the dynamics yielded a significant number of trajectories that followed asymmetric, i.e.non-IRC, paths toward cyclohexene, independent of the initialization approach. It is noteworthy that all these asymmetric path trajectories led to a concerted reaction mechanism.Sociedade Brasileira de Química2009-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000400009Journal of the Brazilian Chemical Society v.20 n.4 2009reponame:Journal of the Brazilian Chemical Society (Online)instname:Sociedade Brasileira de Química (SBQ)instacron:SBQ10.1590/S0103-50532009000400009info:eu-repo/semantics/openAccessSantos,Marcus V. P. dosTeixeira,Erico S.Longo,Ricardo L.eng2009-06-10T00:00:00Zoai:scielo:S0103-50532009000400009Revistahttp://jbcs.sbq.org.brONGhttps://old.scielo.br/oai/scielo-oai.php||office@jbcs.sbq.org.br1678-47900103-5053opendoar:2009-06-10T00:00Journal of the Brazilian Chemical Society (Online) - Sociedade Brasileira de Química (SBQ)false
dc.title.none.fl_str_mv A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
title A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
spellingShingle A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
Santos,Marcus V. P. dos
protonated pinacolyl
ethene + 1,3-butadiene
cycloaddition
non-IRC
title_short A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
title_full A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
title_fullStr A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
title_full_unstemmed A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
title_sort A direct dynamics study of protonated alcohol dehydration and the Diels-Alder reaction
author Santos,Marcus V. P. dos
author_facet Santos,Marcus V. P. dos
Teixeira,Erico S.
Longo,Ricardo L.
author_role author
author2 Teixeira,Erico S.
Longo,Ricardo L.
author2_role author
author
dc.contributor.author.fl_str_mv Santos,Marcus V. P. dos
Teixeira,Erico S.
Longo,Ricardo L.
dc.subject.por.fl_str_mv protonated pinacolyl
ethene + 1,3-butadiene
cycloaddition
non-IRC
topic protonated pinacolyl
ethene + 1,3-butadiene
cycloaddition
non-IRC
description The dynamics of dehydration of the protonated (R)-3,3-dimethylbutan-2-ol (pinacolyl alcohol), [(CH3)3C-CH(OH2)CH3]+, and of ethene + 1,3-butadiene cycloaddition were studied with the Born-Oppenheimer molecular dynamics (BOMD) technique for direct dynamics using the AM1 method. More than 10,000 trajectories were generated, most of them related to the unexplored simulated annealing/fragmentation approach. The AM1 potential energy surface (PES) for the protonated pinacolyl alcohol presents two transition states related to the [(CH3)3C-CHCH3]+hhhOH2 intermediate complex and to CH3 migration leading to the [(CH3)2C-CH(CH)3]2+hhhOH2 product complex. Direct dynamics yielded negligible trajectories involving these complexes, since the momentum acquired by the H2O fragment led to a complete dissociation. Thus, rearrangement of the secondary carbocation [(CH3)3C-CHCH3]+ was practically inexistent during the dynamics. Despite the concerted path (H2O dissociation and CH3 migration) not being an IRC (intrinsic reaction coordinate) path in AM1-PES, a statistically significant number of trajectories involved this path. As for the Diels-Alder reaction, even when started from a symmetric transition state using the spin restricted AM1 wavefunction, the dynamics yielded a significant number of trajectories that followed asymmetric, i.e.non-IRC, paths toward cyclohexene, independent of the initialization approach. It is noteworthy that all these asymmetric path trajectories led to a concerted reaction mechanism.
publishDate 2009
dc.date.none.fl_str_mv 2009-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000400009
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000400009
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S0103-50532009000400009
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Química
publisher.none.fl_str_mv Sociedade Brasileira de Química
dc.source.none.fl_str_mv Journal of the Brazilian Chemical Society v.20 n.4 2009
reponame:Journal of the Brazilian Chemical Society (Online)
instname:Sociedade Brasileira de Química (SBQ)
instacron:SBQ
instname_str Sociedade Brasileira de Química (SBQ)
instacron_str SBQ
institution SBQ
reponame_str Journal of the Brazilian Chemical Society (Online)
collection Journal of the Brazilian Chemical Society (Online)
repository.name.fl_str_mv Journal of the Brazilian Chemical Society (Online) - Sociedade Brasileira de Química (SBQ)
repository.mail.fl_str_mv ||office@jbcs.sbq.org.br
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