Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes
Autor(a) principal: | |
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Data de Publicação: | 2009 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Journal of the Brazilian Chemical Society (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000900011 |
Resumo: | The Sparkle/PM3 model is extended to europium(III), gadolinium(III), and terbium(III) complexes. The validation procedure was carried out using only high quality crystallographic structures, for a total of ninety-six Eu(III) complexes, seventy Gd(III) complexes, and forty-two Tb(III) complexes. The Sparkle/PM3 unsigned mean error, for all interatomic distances between the trivalent lanthanide ion and the ligand atoms of the first sphere of coordination, is: 0.080 Å for Eu(III); 0.063 Å for Gd(III); and 0.070 Å for Tb(III). These figures are similar to the Sparkle/AM1 ones of 0.082 Å, 0.061 Å, and 0.068 Å respectively, indicating they are all comparable parameterizations. Moreover, their accuracy is similar to what can be obtained by present-day ab initio effective core potential full geometry optimization calculations on such lanthanide complexes. Finally, we report a preliminary attempt to show that Sparkle/PM3 geometry predictions are reliable. For one of the Eu(III) complexes, BAFZEO, we created hundreds of different input geometries by randomly varying the distances and angles of the ligands to the central Eu(III) ion, which were all subsequently fully optimized. A significant trend was unveiled, indicating that more accurate local minima geometries cluster at lower total energies, thus reinforcing the validity of sparkle model calculations. |
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Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexesSparkle modelAM1PM3lanthanide complexesrare earth coordination compoundsThe Sparkle/PM3 model is extended to europium(III), gadolinium(III), and terbium(III) complexes. The validation procedure was carried out using only high quality crystallographic structures, for a total of ninety-six Eu(III) complexes, seventy Gd(III) complexes, and forty-two Tb(III) complexes. The Sparkle/PM3 unsigned mean error, for all interatomic distances between the trivalent lanthanide ion and the ligand atoms of the first sphere of coordination, is: 0.080 Å for Eu(III); 0.063 Å for Gd(III); and 0.070 Å for Tb(III). These figures are similar to the Sparkle/AM1 ones of 0.082 Å, 0.061 Å, and 0.068 Å respectively, indicating they are all comparable parameterizations. Moreover, their accuracy is similar to what can be obtained by present-day ab initio effective core potential full geometry optimization calculations on such lanthanide complexes. Finally, we report a preliminary attempt to show that Sparkle/PM3 geometry predictions are reliable. For one of the Eu(III) complexes, BAFZEO, we created hundreds of different input geometries by randomly varying the distances and angles of the ligands to the central Eu(III) ion, which were all subsequently fully optimized. A significant trend was unveiled, indicating that more accurate local minima geometries cluster at lower total energies, thus reinforcing the validity of sparkle model calculations.Sociedade Brasileira de Química2009-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000900011Journal of the Brazilian Chemical Society v.20 n.9 2009reponame:Journal of the Brazilian Chemical Society (Online)instname:Sociedade Brasileira de Química (SBQ)instacron:SBQ10.1590/S0103-50532009000900011info:eu-repo/semantics/openAccessFreire,Ricardo O.Rocha,Gerd B.Simas,Alfredo M.eng2011-10-14T00:00:00Zoai:scielo:S0103-50532009000900011Revistahttp://jbcs.sbq.org.brONGhttps://old.scielo.br/oai/scielo-oai.php||office@jbcs.sbq.org.br1678-47900103-5053opendoar:2011-10-14T00:00Journal of the Brazilian Chemical Society (Online) - Sociedade Brasileira de Química (SBQ)false |
dc.title.none.fl_str_mv |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
title |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
spellingShingle |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes Freire,Ricardo O. Sparkle model AM1 PM3 lanthanide complexes rare earth coordination compounds |
title_short |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
title_full |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
title_fullStr |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
title_full_unstemmed |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
title_sort |
Sparkle/PM3 for the modeling of europium(III), gadolinium(III), and terbium(III) complexes |
author |
Freire,Ricardo O. |
author_facet |
Freire,Ricardo O. Rocha,Gerd B. Simas,Alfredo M. |
author_role |
author |
author2 |
Rocha,Gerd B. Simas,Alfredo M. |
author2_role |
author author |
dc.contributor.author.fl_str_mv |
Freire,Ricardo O. Rocha,Gerd B. Simas,Alfredo M. |
dc.subject.por.fl_str_mv |
Sparkle model AM1 PM3 lanthanide complexes rare earth coordination compounds |
topic |
Sparkle model AM1 PM3 lanthanide complexes rare earth coordination compounds |
description |
The Sparkle/PM3 model is extended to europium(III), gadolinium(III), and terbium(III) complexes. The validation procedure was carried out using only high quality crystallographic structures, for a total of ninety-six Eu(III) complexes, seventy Gd(III) complexes, and forty-two Tb(III) complexes. The Sparkle/PM3 unsigned mean error, for all interatomic distances between the trivalent lanthanide ion and the ligand atoms of the first sphere of coordination, is: 0.080 Å for Eu(III); 0.063 Å for Gd(III); and 0.070 Å for Tb(III). These figures are similar to the Sparkle/AM1 ones of 0.082 Å, 0.061 Å, and 0.068 Å respectively, indicating they are all comparable parameterizations. Moreover, their accuracy is similar to what can be obtained by present-day ab initio effective core potential full geometry optimization calculations on such lanthanide complexes. Finally, we report a preliminary attempt to show that Sparkle/PM3 geometry predictions are reliable. For one of the Eu(III) complexes, BAFZEO, we created hundreds of different input geometries by randomly varying the distances and angles of the ligands to the central Eu(III) ion, which were all subsequently fully optimized. A significant trend was unveiled, indicating that more accurate local minima geometries cluster at lower total energies, thus reinforcing the validity of sparkle model calculations. |
publishDate |
2009 |
dc.date.none.fl_str_mv |
2009-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000900011 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532009000900011 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/S0103-50532009000900011 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Química |
publisher.none.fl_str_mv |
Sociedade Brasileira de Química |
dc.source.none.fl_str_mv |
Journal of the Brazilian Chemical Society v.20 n.9 2009 reponame:Journal of the Brazilian Chemical Society (Online) instname:Sociedade Brasileira de Química (SBQ) instacron:SBQ |
instname_str |
Sociedade Brasileira de Química (SBQ) |
instacron_str |
SBQ |
institution |
SBQ |
reponame_str |
Journal of the Brazilian Chemical Society (Online) |
collection |
Journal of the Brazilian Chemical Society (Online) |
repository.name.fl_str_mv |
Journal of the Brazilian Chemical Society (Online) - Sociedade Brasileira de Química (SBQ) |
repository.mail.fl_str_mv |
||office@jbcs.sbq.org.br |
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1750318170261946368 |