IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | por |
Título da fonte: | Química Nova (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-40422020000600804 |
Resumo: | Molecular dynamics techniques are increasingly being used for material science studies, being a theoretical approach based on molecular mechanics studies. GROMACS is a free software that allows the development of simulations of various types of molecules, from biological molecules to inorganic structures associated with the area of materials, requiring the system parameterization according to the force fields used in the simulation. ClayFF is a force field used for crystalline clay structures and has been applied in several articles published in scientific journals. The objective of this work was to present a didactic approach to the implementation of ClayFF in GROMACS and the force field was used to simulate a kaolinite structure as an example, demonstrating the implementation for students and researchers in the field. |
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IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITAmolecular dynamicsforce fieldClayFFkaoliniteMolecular dynamics techniques are increasingly being used for material science studies, being a theoretical approach based on molecular mechanics studies. GROMACS is a free software that allows the development of simulations of various types of molecules, from biological molecules to inorganic structures associated with the area of materials, requiring the system parameterization according to the force fields used in the simulation. ClayFF is a force field used for crystalline clay structures and has been applied in several articles published in scientific journals. The objective of this work was to present a didactic approach to the implementation of ClayFF in GROMACS and the force field was used to simulate a kaolinite structure as an example, demonstrating the implementation for students and researchers in the field.Sociedade Brasileira de Química2020-06-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-40422020000600804Química Nova v.43 n.6 2020reponame:Química Nova (Online)instname:Sociedade Brasileira de Química (SBQ)instacron:SBQ10.21577/0100-4042.20170517info:eu-repo/semantics/openAccessMochiutti,EricSehwartz,Rodrigo Luiz da C.Lima,João Pedro O.Carvalho,Arthur Lobato S.Neves,Roberto de F.Brasil,Davi do Socorro B.Martellia,Marlice C.por2020-07-20T00:00:00Zoai:scielo:S0100-40422020000600804Revistahttps://www.scielo.br/j/qn/ONGhttps://old.scielo.br/oai/scielo-oai.phpquimicanova@sbq.org.br1678-70640100-4042opendoar:2020-07-20T00:00Química Nova (Online) - Sociedade Brasileira de Química (SBQ)false |
dc.title.none.fl_str_mv |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
title |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
spellingShingle |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA Mochiutti,Eric molecular dynamics force field ClayFF kaolinite |
title_short |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
title_full |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
title_fullStr |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
title_full_unstemmed |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
title_sort |
IMPLEMENTAÇÃO DO CAMPO DE FORÇA CLAYFF NO GROMACS: UMA APLICAÇÃO EM ESTRUTURA DE CAULINITA |
author |
Mochiutti,Eric |
author_facet |
Mochiutti,Eric Sehwartz,Rodrigo Luiz da C. Lima,João Pedro O. Carvalho,Arthur Lobato S. Neves,Roberto de F. Brasil,Davi do Socorro B. Martellia,Marlice C. |
author_role |
author |
author2 |
Sehwartz,Rodrigo Luiz da C. Lima,João Pedro O. Carvalho,Arthur Lobato S. Neves,Roberto de F. Brasil,Davi do Socorro B. Martellia,Marlice C. |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Mochiutti,Eric Sehwartz,Rodrigo Luiz da C. Lima,João Pedro O. Carvalho,Arthur Lobato S. Neves,Roberto de F. Brasil,Davi do Socorro B. Martellia,Marlice C. |
dc.subject.por.fl_str_mv |
molecular dynamics force field ClayFF kaolinite |
topic |
molecular dynamics force field ClayFF kaolinite |
description |
Molecular dynamics techniques are increasingly being used for material science studies, being a theoretical approach based on molecular mechanics studies. GROMACS is a free software that allows the development of simulations of various types of molecules, from biological molecules to inorganic structures associated with the area of materials, requiring the system parameterization according to the force fields used in the simulation. ClayFF is a force field used for crystalline clay structures and has been applied in several articles published in scientific journals. The objective of this work was to present a didactic approach to the implementation of ClayFF in GROMACS and the force field was used to simulate a kaolinite structure as an example, demonstrating the implementation for students and researchers in the field. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-06-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-40422020000600804 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-40422020000600804 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.none.fl_str_mv |
10.21577/0100-4042.20170517 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Química |
publisher.none.fl_str_mv |
Sociedade Brasileira de Química |
dc.source.none.fl_str_mv |
Química Nova v.43 n.6 2020 reponame:Química Nova (Online) instname:Sociedade Brasileira de Química (SBQ) instacron:SBQ |
instname_str |
Sociedade Brasileira de Química (SBQ) |
instacron_str |
SBQ |
institution |
SBQ |
reponame_str |
Química Nova (Online) |
collection |
Química Nova (Online) |
repository.name.fl_str_mv |
Química Nova (Online) - Sociedade Brasileira de Química (SBQ) |
repository.mail.fl_str_mv |
quimicanova@sbq.org.br |
_version_ |
1750318120541618176 |