Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)

Detalhes bibliográficos
Autor(a) principal: Boroni,Natália Lima
Data de Publicação: 2017
Outros Autores: Lobo,Leonardo Souza, Romano,Pedro Seyferth R., Lessa,Gisele
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Zoologia (Curitiba. Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702017000100315
Resumo: ABSTRACT The taxonomic identification of micromammals might be complicated when the study material is fragmented, as it is the case with pellets and fossil material. On the other hand, tooth morphology generally provides accurate information for species identification. Teeth preserve notably well, retaining their original morphology, unlike skulls and mandibles, which can get crushed or have missing parts. Here, we explored a geometric morphometrics approach (GM) to identify fragmented specimens of two sympatric Calomys Waterhouse, 1837 species - Calomys tener (Winge, 1888) and Calomys expulsus (Lund, 1841) - using the morphology of intact molars as the basis for identification. Furthermore, we included some specimens of uncertain taxonomic identification to test their affinities and the utility of the shape of the molar to identify incomplete specimens. We evaluated the variations in the shape of the first upper molar (M1) among 46 owl pellets specimens of Calomys, including C. expulsus (n = 15), C. tener (n = 15), and unidentified specimens treated as Calomys sp. (n = 16) through GM analysis using 17 landmarks. The data was explored using PCA, PERMANOVA, and Discriminant analyses over the Procrustes residuals matrix were applied to evaluate inter- and intraspecific shape differences. Also, we evaluated whether allometric shape differences could impact the data, but found no evidence of a correlation between size and shape. Our results support that shape differences in the M1 are effective for discriminating between C. tener and C. expulsus. Moreover, the unidentified specimens do not represent a third shape but could be identified with confidence either as C. tener or C. expulsus. Our results show that even with fragmentary materials, GM is a feasible and useful tool for exploring inter-specific shape differences and assisting in taxonomic identification as a complement to traditional qualitative description of diagnostic features in poorly preserved specimens.
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spelling Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)morphologyowl pelletsSigmodontinaetaxonomy.ABSTRACT The taxonomic identification of micromammals might be complicated when the study material is fragmented, as it is the case with pellets and fossil material. On the other hand, tooth morphology generally provides accurate information for species identification. Teeth preserve notably well, retaining their original morphology, unlike skulls and mandibles, which can get crushed or have missing parts. Here, we explored a geometric morphometrics approach (GM) to identify fragmented specimens of two sympatric Calomys Waterhouse, 1837 species - Calomys tener (Winge, 1888) and Calomys expulsus (Lund, 1841) - using the morphology of intact molars as the basis for identification. Furthermore, we included some specimens of uncertain taxonomic identification to test their affinities and the utility of the shape of the molar to identify incomplete specimens. We evaluated the variations in the shape of the first upper molar (M1) among 46 owl pellets specimens of Calomys, including C. expulsus (n = 15), C. tener (n = 15), and unidentified specimens treated as Calomys sp. (n = 16) through GM analysis using 17 landmarks. The data was explored using PCA, PERMANOVA, and Discriminant analyses over the Procrustes residuals matrix were applied to evaluate inter- and intraspecific shape differences. Also, we evaluated whether allometric shape differences could impact the data, but found no evidence of a correlation between size and shape. Our results support that shape differences in the M1 are effective for discriminating between C. tener and C. expulsus. Moreover, the unidentified specimens do not represent a third shape but could be identified with confidence either as C. tener or C. expulsus. Our results show that even with fragmentary materials, GM is a feasible and useful tool for exploring inter-specific shape differences and assisting in taxonomic identification as a complement to traditional qualitative description of diagnostic features in poorly preserved specimens.Sociedade Brasileira de Zoologia2017-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702017000100315Zoologia (Curitiba) v.34 2017reponame:Zoologia (Curitiba. Online)instname:Sociedade Brasileira de Zoologiainstacron:SBZ10.3897/zoologia.34.e19864info:eu-repo/semantics/openAccessBoroni,Natália LimaLobo,Leonardo SouzaRomano,Pedro Seyferth R.Lessa,Giseleeng2017-10-18T00:00:00Zoai:scielo:S1984-46702017000100315Revistahttp://www.scielo.br/zoolONGhttps://old.scielo.br/oai/scielo-oai.phpsbz@sbzoologia.org.br1984-46891984-4670opendoar:2017-10-18T00:00Zoologia (Curitiba. Online) - Sociedade Brasileira de Zoologiafalse
dc.title.none.fl_str_mv Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
title Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
spellingShingle Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
Boroni,Natália Lima
morphology
owl pellets
Sigmodontinae
taxonomy.
title_short Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
title_full Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
title_fullStr Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
title_full_unstemmed Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
title_sort Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)
author Boroni,Natália Lima
author_facet Boroni,Natália Lima
Lobo,Leonardo Souza
Romano,Pedro Seyferth R.
Lessa,Gisele
author_role author
author2 Lobo,Leonardo Souza
Romano,Pedro Seyferth R.
Lessa,Gisele
author2_role author
author
author
dc.contributor.author.fl_str_mv Boroni,Natália Lima
Lobo,Leonardo Souza
Romano,Pedro Seyferth R.
Lessa,Gisele
dc.subject.por.fl_str_mv morphology
owl pellets
Sigmodontinae
taxonomy.
topic morphology
owl pellets
Sigmodontinae
taxonomy.
description ABSTRACT The taxonomic identification of micromammals might be complicated when the study material is fragmented, as it is the case with pellets and fossil material. On the other hand, tooth morphology generally provides accurate information for species identification. Teeth preserve notably well, retaining their original morphology, unlike skulls and mandibles, which can get crushed or have missing parts. Here, we explored a geometric morphometrics approach (GM) to identify fragmented specimens of two sympatric Calomys Waterhouse, 1837 species - Calomys tener (Winge, 1888) and Calomys expulsus (Lund, 1841) - using the morphology of intact molars as the basis for identification. Furthermore, we included some specimens of uncertain taxonomic identification to test their affinities and the utility of the shape of the molar to identify incomplete specimens. We evaluated the variations in the shape of the first upper molar (M1) among 46 owl pellets specimens of Calomys, including C. expulsus (n = 15), C. tener (n = 15), and unidentified specimens treated as Calomys sp. (n = 16) through GM analysis using 17 landmarks. The data was explored using PCA, PERMANOVA, and Discriminant analyses over the Procrustes residuals matrix were applied to evaluate inter- and intraspecific shape differences. Also, we evaluated whether allometric shape differences could impact the data, but found no evidence of a correlation between size and shape. Our results support that shape differences in the M1 are effective for discriminating between C. tener and C. expulsus. Moreover, the unidentified specimens do not represent a third shape but could be identified with confidence either as C. tener or C. expulsus. Our results show that even with fragmentary materials, GM is a feasible and useful tool for exploring inter-specific shape differences and assisting in taxonomic identification as a complement to traditional qualitative description of diagnostic features in poorly preserved specimens.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702017000100315
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702017000100315
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.3897/zoologia.34.e19864
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Zoologia
publisher.none.fl_str_mv Sociedade Brasileira de Zoologia
dc.source.none.fl_str_mv Zoologia (Curitiba) v.34 2017
reponame:Zoologia (Curitiba. Online)
instname:Sociedade Brasileira de Zoologia
instacron:SBZ
instname_str Sociedade Brasileira de Zoologia
instacron_str SBZ
institution SBZ
reponame_str Zoologia (Curitiba. Online)
collection Zoologia (Curitiba. Online)
repository.name.fl_str_mv Zoologia (Curitiba. Online) - Sociedade Brasileira de Zoologia
repository.mail.fl_str_mv sbz@sbzoologia.org.br
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