Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast

Detalhes bibliográficos
Autor(a) principal: Gong,Jie
Data de Publicação: 2020
Outros Autores: Chen,Baohua, Li,Bijun, Zhou,Zhixiong, Shi,Yue, Ke,Qiaozhen, Zhang,Dianchang, Xu,Peng
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Zoologia (Curitiba. Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702020000100314
Resumo: ABSTRACT The whole mitochondrial genome of Lateolabrax maculatus (Cuvier, 1828) was used to investigate the reasons for the observed patterns of genetic differentiation among 12 populations in northern and southern China. The haplotype diversity and nucleotide diversity of L. maculatus were 0.998 and 0.00169, respectively. Pairwise FST values between populations ranged from 0.001 to 0.429, correlating positively with geographic distance. Genetic structure analysis and haplotype network analysis indicated that these populations were split into two groups, in agreement with geographic segregation and environment. Tajima’s D values, Fu’s Fs tests and Bayesian skyline plot (BSP) indicated that a demographic expansion event may have occurred in the history of L. maculatus. Through selection pressure analysis, we found evidence of significant negative selection at the ATP6, ND3, Cytb, COX3, COX2 and COX1 genes. In our hypotheses, this study implied that demographic events and selection of local environmental conditions, including temperature, are responsible for population divergence. These findings are a step forward toward the understanding of the genetic basis of differentiation and adaptation, as well as conservation of L. maculatus.
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spelling Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coastAdaptationgenetic differentiationselectionABSTRACT The whole mitochondrial genome of Lateolabrax maculatus (Cuvier, 1828) was used to investigate the reasons for the observed patterns of genetic differentiation among 12 populations in northern and southern China. The haplotype diversity and nucleotide diversity of L. maculatus were 0.998 and 0.00169, respectively. Pairwise FST values between populations ranged from 0.001 to 0.429, correlating positively with geographic distance. Genetic structure analysis and haplotype network analysis indicated that these populations were split into two groups, in agreement with geographic segregation and environment. Tajima’s D values, Fu’s Fs tests and Bayesian skyline plot (BSP) indicated that a demographic expansion event may have occurred in the history of L. maculatus. Through selection pressure analysis, we found evidence of significant negative selection at the ATP6, ND3, Cytb, COX3, COX2 and COX1 genes. In our hypotheses, this study implied that demographic events and selection of local environmental conditions, including temperature, are responsible for population divergence. These findings are a step forward toward the understanding of the genetic basis of differentiation and adaptation, as well as conservation of L. maculatus.Sociedade Brasileira de Zoologia2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702020000100314Zoologia (Curitiba) v.37 2020reponame:Zoologia (Curitiba. Online)instname:Sociedade Brasileira de Zoologiainstacron:SBZ10.3897/zoologia.37.e49046info:eu-repo/semantics/openAccessGong,JieChen,BaohuaLi,BijunZhou,ZhixiongShi,YueKe,QiaozhenZhang,DianchangXu,Pengeng2020-09-04T00:00:00Zoai:scielo:S1984-46702020000100314Revistahttp://www.scielo.br/zoolONGhttps://old.scielo.br/oai/scielo-oai.phpsbz@sbzoologia.org.br1984-46891984-4670opendoar:2020-09-04T00:00Zoologia (Curitiba. Online) - Sociedade Brasileira de Zoologiafalse
dc.title.none.fl_str_mv Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
title Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
spellingShingle Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
Gong,Jie
Adaptation
genetic differentiation
selection
title_short Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
title_full Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
title_fullStr Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
title_full_unstemmed Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
title_sort Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
author Gong,Jie
author_facet Gong,Jie
Chen,Baohua
Li,Bijun
Zhou,Zhixiong
Shi,Yue
Ke,Qiaozhen
Zhang,Dianchang
Xu,Peng
author_role author
author2 Chen,Baohua
Li,Bijun
Zhou,Zhixiong
Shi,Yue
Ke,Qiaozhen
Zhang,Dianchang
Xu,Peng
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Gong,Jie
Chen,Baohua
Li,Bijun
Zhou,Zhixiong
Shi,Yue
Ke,Qiaozhen
Zhang,Dianchang
Xu,Peng
dc.subject.por.fl_str_mv Adaptation
genetic differentiation
selection
topic Adaptation
genetic differentiation
selection
description ABSTRACT The whole mitochondrial genome of Lateolabrax maculatus (Cuvier, 1828) was used to investigate the reasons for the observed patterns of genetic differentiation among 12 populations in northern and southern China. The haplotype diversity and nucleotide diversity of L. maculatus were 0.998 and 0.00169, respectively. Pairwise FST values between populations ranged from 0.001 to 0.429, correlating positively with geographic distance. Genetic structure analysis and haplotype network analysis indicated that these populations were split into two groups, in agreement with geographic segregation and environment. Tajima’s D values, Fu’s Fs tests and Bayesian skyline plot (BSP) indicated that a demographic expansion event may have occurred in the history of L. maculatus. Through selection pressure analysis, we found evidence of significant negative selection at the ATP6, ND3, Cytb, COX3, COX2 and COX1 genes. In our hypotheses, this study implied that demographic events and selection of local environmental conditions, including temperature, are responsible for population divergence. These findings are a step forward toward the understanding of the genetic basis of differentiation and adaptation, as well as conservation of L. maculatus.
publishDate 2020
dc.date.none.fl_str_mv 2020-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702020000100314
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702020000100314
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.3897/zoologia.37.e49046
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Zoologia
publisher.none.fl_str_mv Sociedade Brasileira de Zoologia
dc.source.none.fl_str_mv Zoologia (Curitiba) v.37 2020
reponame:Zoologia (Curitiba. Online)
instname:Sociedade Brasileira de Zoologia
instacron:SBZ
instname_str Sociedade Brasileira de Zoologia
instacron_str SBZ
institution SBZ
reponame_str Zoologia (Curitiba. Online)
collection Zoologia (Curitiba. Online)
repository.name.fl_str_mv Zoologia (Curitiba. Online) - Sociedade Brasileira de Zoologia
repository.mail.fl_str_mv sbz@sbzoologia.org.br
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