Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus

Detalhes bibliográficos
Autor(a) principal: Malaver, Jorge Luis Ramirez
Data de Publicação: 2011
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/5486
Resumo: The family Threskiornithidae includes 13 genera and 32 species, but the relationships among genera, species or subspecies have been little studied. This family is traditionally divided into two subfamilies: Plataleinae and Threskiornithinae. One of the more interesting taxonomical questions within this group is the case of the species Eudocimus ruber and Eudocimus albus. They are usually considered as separate species, but they show similar behavior and there are also records of hybridization in nature. This study aims to reconstruct the phylogenetic relationships within the family Threskiornithidae as well as assess the level of genetic differentiation between Eudocimus albus and E. rubber, using mitochondrial and nuclear gene sequences. DNA was extracted from blood and tissue samples from 13 species of Threskiornithidae (seven genera) and two outgroups. For the Eudocimus study were extracted 10 individuals of each species. We sequenced the 16S rRNA and the intron 7 of β- Fibrinogen for all species. For Eudocimus Cytochrome B, Cytochrome Oxidase I, intron 11 of Glyceraldehyde-3-Phosphate Desidrogenase, intron 4 of the Myelin Proteolipid Protein and intron 2 of Myoglobin were also sequenced. Sequences for other five species of the family were obtained from GenBank. Phylogenetic trees were constructed using Neighbor-Joining, Maximum Parsimony, Maximum Likelihood, Bayesian inference and Bayesian inference of species tree. Networks and genetic distances were determined for Eudocimus haplotypes. Several approaches for species delimitation using multilocus data were applied. All analyses strongly supported the family Threskiornithidae (18 species) as a monophyletic group. However, the current classification of two subfamilies was not supported by our data: Plataleinae formed a monophyletic group, but nested within Threskiornithinae (a paraphyletic group). Tests of monophyly rejected the hypothesis of monophyly of Threskiornithinae. The family Threskiornithidae also showed a division into two groups: one with only genera endemic to the American continent (Theristicus and Eudocimus) and another with the remaining species. Within the latter clade, species of genus Plegadis are observed in a basal position, while subfamily Plataleinae was grouped with the remaining species. This pattern of species distribution suggests an initial Gondwana division and subsequent colonization by species from the Old to the New World. The divergence within the family was estimated at 35-40 million years, which is before the separation between America and Antarctica. Mitochondrial genetic analysis showed Eudocimus species as two different lineages. Multilocus analysis based on nuclear genes revealed a strong signal of speciation despite the polyphyly found in three of the four markers.
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spelling Malaver, Jorge Luis RamirezDel Lama, Sílvia Nassifhttp://lattes.cnpq.br/7893772074091604http://lattes.cnpq.br/3073682959497475b5a10c70-016a-44b4-80b3-afee5392dd622016-06-02T20:21:26Z2011-06-032016-06-02T20:21:26Z2011-03-01MALAVER, Jorge Luis Ramirez. Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus. 2011. 74 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.https://repositorio.ufscar.br/handle/ufscar/5486The family Threskiornithidae includes 13 genera and 32 species, but the relationships among genera, species or subspecies have been little studied. This family is traditionally divided into two subfamilies: Plataleinae and Threskiornithinae. One of the more interesting taxonomical questions within this group is the case of the species Eudocimus ruber and Eudocimus albus. They are usually considered as separate species, but they show similar behavior and there are also records of hybridization in nature. This study aims to reconstruct the phylogenetic relationships within the family Threskiornithidae as well as assess the level of genetic differentiation between Eudocimus albus and E. rubber, using mitochondrial and nuclear gene sequences. DNA was extracted from blood and tissue samples from 13 species of Threskiornithidae (seven genera) and two outgroups. For the Eudocimus study were extracted 10 individuals of each species. We sequenced the 16S rRNA and the intron 7 of β- Fibrinogen for all species. For Eudocimus Cytochrome B, Cytochrome Oxidase I, intron 11 of Glyceraldehyde-3-Phosphate Desidrogenase, intron 4 of the Myelin Proteolipid Protein and intron 2 of Myoglobin were also sequenced. Sequences for other five species of the family were obtained from GenBank. Phylogenetic trees were constructed using Neighbor-Joining, Maximum Parsimony, Maximum Likelihood, Bayesian inference and Bayesian inference of species tree. Networks and genetic distances were determined for Eudocimus haplotypes. Several approaches for species delimitation using multilocus data were applied. All analyses strongly supported the family Threskiornithidae (18 species) as a monophyletic group. However, the current classification of two subfamilies was not supported by our data: Plataleinae formed a monophyletic group, but nested within Threskiornithinae (a paraphyletic group). Tests of monophyly rejected the hypothesis of monophyly of Threskiornithinae. The family Threskiornithidae also showed a division into two groups: one with only genera endemic to the American continent (Theristicus and Eudocimus) and another with the remaining species. Within the latter clade, species of genus Plegadis are observed in a basal position, while subfamily Plataleinae was grouped with the remaining species. This pattern of species distribution suggests an initial Gondwana division and subsequent colonization by species from the Old to the New World. The divergence within the family was estimated at 35-40 million years, which is before the separation between America and Antarctica. Mitochondrial genetic analysis showed Eudocimus species as two different lineages. Multilocus analysis based on nuclear genes revealed a strong signal of speciation despite the polyphyly found in three of the four markers.A família Threskiornithidae inclui 13 gêneros e 32 espécies e suas relações interespecíficas, assim como as designações dos gêneros, espécies ou subespécies foram pouco estudadas. A família tem sido dividida em duas subfamílias: Plataleinae e Threskiornithinae. O caso de Eudocimus ruber e Eudocimus albus é uma das questões interessantes da taxonomia do grupo, pois têm sido consideradas como espécies, mas mostram similaridades no comportamento e há registros de hibridização na natureza. Os objetivos do presente estudo foram reconstruir as relações filogenéticas dentro da família Threskiornithidae e avaliar o nível de diferenciação genética entre Eudocimus albus e E. ruber, baseando-se nos dados de sequências de genes mitocondriais e nucleares. DNA foi extraído de amostras de sangue e de tecidos de 13 espécies de Threskiornithidae, representantes de sete gêneros da família e de dois grupos externos. Para o estudo do caso de Eudocimus foram analisadas amostras de 10 indivíduos de cada espécie. Foram sequenciados os genes 16S rRNA e o íntron 7 do β-fibrinogênio para todas as espécies. Nos indivíduos de Eudocimus foram sequenciados também os genes Citocromo B, Citocromo Oxidase I, o íntron 11 da Gliceraldeído-3-Fosfato Desidrogenase, o íntron 4 da Proteína Proteolipídica da Mielina e o íntron 2 da Mioglobina. Sequências para outras cinco espécies da família foram obtidas do GenBank. Árvores filogenéticas foram construídas pelos métodos de inferência de Neighbor-Joining, Máxima Parcimônia, Máxima Verossimilhança, Análise Bayesiana e Estimativa Bayesiana de árvore de espécies. Redes de haplótipos e distâncias genéticas foram determinadas para as sequências de Eudocimus. Diversas abordagens de delimitação de espécies usando informação multilocus foram realizadas. A família Threskiornithidae com 18 espécies se apresentou como grupo monofilético fortemente sustentado em todas as análises. A classificação atual das duas subfamílias não foi corroborada: Plataleinae se apresentou como grupo monofilético, mas agrupada dentro dos Threskiornithinae, sendo este último um grupo parafilético. Os testes de monofilia rejeitaram a hipótese de Threskiornithinae ser um grupo monofilético. A família Threskiornithidae pode ser dividida em dois grupos: o primeiro agrupando somente gêneros endêmicos do continente americano (Theristicus e Eudocimus) e o outro com as demais espécies. Dentro deste ultimo clado, observa-se em posição basal as espécies do gênero Plegadis e a subfamília Plataleinae agrupada com o restante das espécies. Este padrão de distribuição de espécies concorda com uma divisão inicial Gondwânica e uma posterior colonização por espécies do velho ao novo mundo. A divergência da família foi estimada em 35 40 milhões de anos, data anterior à separação do continente Americano da Antártica. As análises genéticas mitocondriais mostraram as espécies de Eudocimus como duas linhagens diferentes. Nas análises multilocus baseadas nos genes nucleares foi possível recuperar um forte sinal de especiação apesar da polifilia encontrada em três dos quatro marcadores.Financiadora de Estudos e Projetosapplication/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEvUFSCarBRFilogeniaPlataleinaeGuaráDelimitação de espéciesMolecular phylogenyThreskiornithidaePlataleinaeScarlet IbisEudocimusSpecies delimitationCIENCIAS BIOLOGICAS::GENETICAProblemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimusinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-1-13c04fac6-aac3-4fd5-a5bd-fe8076dd2c96info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINAL3664.pdfapplication/pdf2255481https://repositorio.ufscar.br/bitstream/ufscar/5486/1/3664.pdf8606405322631d7b23133954708544a6MD51THUMBNAIL3664.pdf.jpg3664.pdf.jpgIM Thumbnailimage/jpeg6781https://repositorio.ufscar.br/bitstream/ufscar/5486/2/3664.pdf.jpgd2014a92e6369b9c512cd35832053369MD52ufscar/54862023-09-18 18:31:07.1oai:repositorio.ufscar.br:ufscar/5486Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:31:07Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
title Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
spellingShingle Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
Malaver, Jorge Luis Ramirez
Filogenia
Plataleinae
Guará
Delimitação de espécies
Molecular phylogeny
Threskiornithidae
Plataleinae
Scarlet Ibis
Eudocimus
Species delimitation
CIENCIAS BIOLOGICAS::GENETICA
title_short Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
title_full Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
title_fullStr Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
title_full_unstemmed Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
title_sort Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus
author Malaver, Jorge Luis Ramirez
author_facet Malaver, Jorge Luis Ramirez
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/3073682959497475
dc.contributor.author.fl_str_mv Malaver, Jorge Luis Ramirez
dc.contributor.advisor1.fl_str_mv Del Lama, Sílvia Nassif
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7893772074091604
dc.contributor.authorID.fl_str_mv b5a10c70-016a-44b4-80b3-afee5392dd62
contributor_str_mv Del Lama, Sílvia Nassif
dc.subject.por.fl_str_mv Filogenia
Plataleinae
Guará
Delimitação de espécies
topic Filogenia
Plataleinae
Guará
Delimitação de espécies
Molecular phylogeny
Threskiornithidae
Plataleinae
Scarlet Ibis
Eudocimus
Species delimitation
CIENCIAS BIOLOGICAS::GENETICA
dc.subject.eng.fl_str_mv Molecular phylogeny
Threskiornithidae
Plataleinae
Scarlet Ibis
Eudocimus
Species delimitation
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::GENETICA
description The family Threskiornithidae includes 13 genera and 32 species, but the relationships among genera, species or subspecies have been little studied. This family is traditionally divided into two subfamilies: Plataleinae and Threskiornithinae. One of the more interesting taxonomical questions within this group is the case of the species Eudocimus ruber and Eudocimus albus. They are usually considered as separate species, but they show similar behavior and there are also records of hybridization in nature. This study aims to reconstruct the phylogenetic relationships within the family Threskiornithidae as well as assess the level of genetic differentiation between Eudocimus albus and E. rubber, using mitochondrial and nuclear gene sequences. DNA was extracted from blood and tissue samples from 13 species of Threskiornithidae (seven genera) and two outgroups. For the Eudocimus study were extracted 10 individuals of each species. We sequenced the 16S rRNA and the intron 7 of β- Fibrinogen for all species. For Eudocimus Cytochrome B, Cytochrome Oxidase I, intron 11 of Glyceraldehyde-3-Phosphate Desidrogenase, intron 4 of the Myelin Proteolipid Protein and intron 2 of Myoglobin were also sequenced. Sequences for other five species of the family were obtained from GenBank. Phylogenetic trees were constructed using Neighbor-Joining, Maximum Parsimony, Maximum Likelihood, Bayesian inference and Bayesian inference of species tree. Networks and genetic distances were determined for Eudocimus haplotypes. Several approaches for species delimitation using multilocus data were applied. All analyses strongly supported the family Threskiornithidae (18 species) as a monophyletic group. However, the current classification of two subfamilies was not supported by our data: Plataleinae formed a monophyletic group, but nested within Threskiornithinae (a paraphyletic group). Tests of monophyly rejected the hypothesis of monophyly of Threskiornithinae. The family Threskiornithidae also showed a division into two groups: one with only genera endemic to the American continent (Theristicus and Eudocimus) and another with the remaining species. Within the latter clade, species of genus Plegadis are observed in a basal position, while subfamily Plataleinae was grouped with the remaining species. This pattern of species distribution suggests an initial Gondwana division and subsequent colonization by species from the Old to the New World. The divergence within the family was estimated at 35-40 million years, which is before the separation between America and Antarctica. Mitochondrial genetic analysis showed Eudocimus species as two different lineages. Multilocus analysis based on nuclear genes revealed a strong signal of speciation despite the polyphyly found in three of the four markers.
publishDate 2011
dc.date.available.fl_str_mv 2011-06-03
2016-06-02T20:21:26Z
dc.date.issued.fl_str_mv 2011-03-01
dc.date.accessioned.fl_str_mv 2016-06-02T20:21:26Z
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dc.identifier.citation.fl_str_mv MALAVER, Jorge Luis Ramirez. Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus. 2011. 74 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/5486
identifier_str_mv MALAVER, Jorge Luis Ramirez. Problemas taxonômicos da família Threskiornithidae: filogenia molecular e o caso de Eudocimus. 2011. 74 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.
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