FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFSCAR |
Texto Completo: | https://repositorio.ufscar.br/handle/ufscar/2106 |
Resumo: | This work proposes the use of the Fourier Transform Infrared (FTIR) spectroscopy as part of a polyphasic approach to assist the identification and classification of coccoid green microalgae. Attenuated Total Reflectance (ATR) technique was tested to determine if it can provide highly reproducible spectra, a primary requirement to achieve good discrimination between strains of microorganisms. It was also tested spectral window selection, in conjunction with spectra pre-treatments, to determine the best method to perform the strains discrimination. The results were evaluated by reproducibility of spectra and chemometrics analyses by principal components (PCA) and hierarchical clusters (HCA) analysis, in terms of correct discrimination and classification of closely related chlorophycean coccoid microalgae strains, compared to currently accepted classifications. ATR technique provided the reproducibility needed, verified by the excellent strains discrimination. Further, strains were positioned by HCA in clades correctly correlated to classification ranks orders and families. However, these results were obtained when using spectral windows that differ from previously reported studies, 1500 1200 cm-1 and 900 675 cm-1, excluding spectrum regions relative to storage compounds, which was found to negatively impact the analyses. It was concluded that the ATR - FTIR technique has great potential to assist traditional approaches of coccoid green microalgae identification and classification, though a careful spectrum region selection is needed. |
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Moraes, Guilherme Pavan deVieira, Armando Augusto Henriqueshttp://lattes.cnpq.br/4428377384377272http://lattes.cnpq.br/57706135352828715658e7c2-f4af-4e7c-9555-673769ea0a6a2016-06-02T19:32:10Z2014-08-072016-06-02T19:32:10Z2014-05-30MORAES, Guilherme Pavan de. FTIR ATR aplicado à discriminação de microalgas planctônicas verdes cocóides. 2014. 74 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2014.https://repositorio.ufscar.br/handle/ufscar/2106This work proposes the use of the Fourier Transform Infrared (FTIR) spectroscopy as part of a polyphasic approach to assist the identification and classification of coccoid green microalgae. Attenuated Total Reflectance (ATR) technique was tested to determine if it can provide highly reproducible spectra, a primary requirement to achieve good discrimination between strains of microorganisms. It was also tested spectral window selection, in conjunction with spectra pre-treatments, to determine the best method to perform the strains discrimination. The results were evaluated by reproducibility of spectra and chemometrics analyses by principal components (PCA) and hierarchical clusters (HCA) analysis, in terms of correct discrimination and classification of closely related chlorophycean coccoid microalgae strains, compared to currently accepted classifications. ATR technique provided the reproducibility needed, verified by the excellent strains discrimination. Further, strains were positioned by HCA in clades correctly correlated to classification ranks orders and families. However, these results were obtained when using spectral windows that differ from previously reported studies, 1500 1200 cm-1 and 900 675 cm-1, excluding spectrum regions relative to storage compounds, which was found to negatively impact the analyses. It was concluded that the ATR - FTIR technique has great potential to assist traditional approaches of coccoid green microalgae identification and classification, though a careful spectrum region selection is needed.Este trabalho propõe o uso da espectroscopia de infravermelho por transformada de Fourier (FTIR) como parte de uma abordagem polifásica para ajudar na identificação e classificação de microalgas verdes cocóides. A técnica ATR (Attenuated Total Reflectance) foi testada quanto a sua capacidade de fornecer espectros altamente reprodutíveis, requerimento primário para obter boa discriminação entre cepas de microrganismos. Testou-se a seleção de janelas espectrais, em conjunção com pré-tratamentos dos espectros, para determinar o melhor método para realizar a separação das cepas. Os resultados foram avaliados quanto à reprodutibilidade do espectro e através de análises de quimiometria por análise de componentes principais (PCA) e análise de clusters hierárquicos (HCA), em termos da correta discriminação e classificação das cepas de microalgas clorofíceas cocóides proximamente relacionadas, comparadas com as classificações atualmente aceitas obtidas da literatura. A técnica de ATR forneceu a reprodutibilidade necessária, verificada pela excelente discriminação das cepas. Adicionalmente, as cepas foram posicionadas em clusters no HCA que se correlacionam corretamente com as classificações das ordens e famílias. No entanto, para obter estes resultados usamos janelas espectrais que diferem de estudos anteriores, 1500 1200 cm-1 e 900 675 cm-1, excluindo regiões do espectro relativas a compostos de reservas, as quais influenciaram negativamente as análises. Concluímos que a técnica de FTIR ATR tem grande potencial para ajudar as abordagens tradicionais de identificação e classificação de microalgas verdes cocóides, contanto que uma cuidadosa seleção de regiões espectrais seja realizada.Financiadora de Estudos e Projetosapplication/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Ecologia e Recursos Naturais - PPGERNUFSCarBRFicologiaChlorophyceaeDiscriminaçãoEspectroscopia de infravermelhoQuimiometriaCIENCIAS BIOLOGICAS::ECOLOGIAFTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóidesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-1-16b6727ce-acd7-4dc9-b8ab-698199cebaaeinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINAL6033.pdfapplication/pdf3278250https://repositorio.ufscar.br/bitstream/ufscar/2106/1/6033.pdfdf418380338cf9e1a71904463a855d69MD51TEXT6033.pdf.txt6033.pdf.txtExtracted texttext/plain0https://repositorio.ufscar.br/bitstream/ufscar/2106/2/6033.pdf.txtd41d8cd98f00b204e9800998ecf8427eMD52THUMBNAIL6033.pdf.jpg6033.pdf.jpgIM Thumbnailimage/jpeg7003https://repositorio.ufscar.br/bitstream/ufscar/2106/3/6033.pdf.jpgd66d58c673e43372bba9ce32b263c953MD53ufscar/21062023-09-18 18:31:48.152oai:repositorio.ufscar.br:ufscar/2106Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:31:48Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false |
dc.title.por.fl_str_mv |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
title |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
spellingShingle |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides Moraes, Guilherme Pavan de Ficologia Chlorophyceae Discriminação Espectroscopia de infravermelho Quimiometria CIENCIAS BIOLOGICAS::ECOLOGIA |
title_short |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
title_full |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
title_fullStr |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
title_full_unstemmed |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
title_sort |
FTIR – ATR aplicado à discriminação de microalgas planctônicas verdes cocóides |
author |
Moraes, Guilherme Pavan de |
author_facet |
Moraes, Guilherme Pavan de |
author_role |
author |
dc.contributor.authorlattes.por.fl_str_mv |
http://lattes.cnpq.br/5770613535282871 |
dc.contributor.author.fl_str_mv |
Moraes, Guilherme Pavan de |
dc.contributor.advisor1.fl_str_mv |
Vieira, Armando Augusto Henriques |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/4428377384377272 |
dc.contributor.authorID.fl_str_mv |
5658e7c2-f4af-4e7c-9555-673769ea0a6a |
contributor_str_mv |
Vieira, Armando Augusto Henriques |
dc.subject.por.fl_str_mv |
Ficologia Chlorophyceae Discriminação Espectroscopia de infravermelho Quimiometria |
topic |
Ficologia Chlorophyceae Discriminação Espectroscopia de infravermelho Quimiometria CIENCIAS BIOLOGICAS::ECOLOGIA |
dc.subject.cnpq.fl_str_mv |
CIENCIAS BIOLOGICAS::ECOLOGIA |
description |
This work proposes the use of the Fourier Transform Infrared (FTIR) spectroscopy as part of a polyphasic approach to assist the identification and classification of coccoid green microalgae. Attenuated Total Reflectance (ATR) technique was tested to determine if it can provide highly reproducible spectra, a primary requirement to achieve good discrimination between strains of microorganisms. It was also tested spectral window selection, in conjunction with spectra pre-treatments, to determine the best method to perform the strains discrimination. The results were evaluated by reproducibility of spectra and chemometrics analyses by principal components (PCA) and hierarchical clusters (HCA) analysis, in terms of correct discrimination and classification of closely related chlorophycean coccoid microalgae strains, compared to currently accepted classifications. ATR technique provided the reproducibility needed, verified by the excellent strains discrimination. Further, strains were positioned by HCA in clades correctly correlated to classification ranks orders and families. However, these results were obtained when using spectral windows that differ from previously reported studies, 1500 1200 cm-1 and 900 675 cm-1, excluding spectrum regions relative to storage compounds, which was found to negatively impact the analyses. It was concluded that the ATR - FTIR technique has great potential to assist traditional approaches of coccoid green microalgae identification and classification, though a careful spectrum region selection is needed. |
publishDate |
2014 |
dc.date.available.fl_str_mv |
2014-08-07 2016-06-02T19:32:10Z |
dc.date.issued.fl_str_mv |
2014-05-30 |
dc.date.accessioned.fl_str_mv |
2016-06-02T19:32:10Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
MORAES, Guilherme Pavan de. FTIR ATR aplicado à discriminação de microalgas planctônicas verdes cocóides. 2014. 74 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2014. |
dc.identifier.uri.fl_str_mv |
https://repositorio.ufscar.br/handle/ufscar/2106 |
identifier_str_mv |
MORAES, Guilherme Pavan de. FTIR ATR aplicado à discriminação de microalgas planctônicas verdes cocóides. 2014. 74 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2014. |
url |
https://repositorio.ufscar.br/handle/ufscar/2106 |
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info:eu-repo/semantics/openAccess |
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openAccess |
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application/pdf |
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Universidade Federal de São Carlos |
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Programa de Pós-Graduação em Ecologia e Recursos Naturais - PPGERN |
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UFSCar |
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BR |
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Universidade Federal de São Carlos |
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