Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)

Detalhes bibliográficos
Autor(a) principal: Schmidt, Vitória Anselma
Data de Publicação: 2012
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/136
Resumo: The endophytic microorganisms inhabit the interior of the plants, being found in organs and tissues such as leaves, stems and roots without causing disease or producing visible external structures. The endophytic community consists mainly of bacteria and fungi that unlike pathogens, can benefit the plants, however, depending on conditions such as interaction between bacterial communities, competition for nutrients, it can become pathogenic. The endophytic community has been evaluated in many plants, especially in studies with diazotrophic bacteria. In this study, endophytic bacterial diversity of leaves, stems and roots of physic nut (Jatropha curcas) were studied using morphologic, physiological, biochemical and molecular markers, such as 16S rDNA. The samples were disinfected (removing epiphytic microorganisms), macerated and serially diluted to obtain the suspensions that were inoculated into culture media selective for diazotrophic microorganisms. The plates were incubated at 30°C for seven days. Forty-six colonie s were isolated, with 19 in the leaves, 11 in the stems and 16 in the roots. DNA of these endophytic bacteria purified was isolated, purified and the Y1-16S805 portion of the 16S rRNA gene was amplified and sequenced. Analysis of sequence identity were made by the programs BLASTn, CLUSTALW and phylogenetic analyzes by MEGA5. The roots showed greater diversity of endophytic microorganisms, with seven of the eight genera identified. In the leaves and in the stem, six genera were identified, respectively. In leaves, the exception was the genus Salmonella and Serratia. In the stem, Serratia, and in the roots more than one species of the genera Acinetobacter were found. The genera Bacillus and Burkholderia were found more frequently in all regions sampled. The genus Bacillus in the leaves, stems and roots accounted 20, 4 and 4%, respectively, of the total endophytic microorganisms identified. From the total isolates of the genus Bacillus, 73% belonged to the species B atrophaeus, B. brevis and B. sphaericus, the other 27% belonged to group B. cereus. These results suggest that the endophytic bacteria diversity of physic nut is large. Microorganisms identified in this work have potential for growth promotion, biological control and nitrogen fixation, as they were isolated in selective media with low concentration of nitrogen, in addition there are reports in the literature about the benefits of them for different plants.
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spelling Schmidt, Vitória AnselmaGerald, Lee Tseng Shenghttp://buscatextual.cnpq.br/buscatextual/controladorbuscacvhttp://lattes.cnpq.br/10139312033400550881e5cc-ed5a-4f42-8dbe-c8ed47c804cc2016-06-02T18:57:42Z2012-12-192016-06-02T18:57:42Z2012-08-02SCHMIDT, Vitória Anselma. Occurrence of endophytic bacteria in culture of physic Nut (jatropha curcas l.). 2012. 82 f. Dissertação (Mestrado em Ciências Agrárias) - Universidade Federal de São Carlos, Araras, 2012.https://repositorio.ufscar.br/handle/ufscar/136The endophytic microorganisms inhabit the interior of the plants, being found in organs and tissues such as leaves, stems and roots without causing disease or producing visible external structures. The endophytic community consists mainly of bacteria and fungi that unlike pathogens, can benefit the plants, however, depending on conditions such as interaction between bacterial communities, competition for nutrients, it can become pathogenic. The endophytic community has been evaluated in many plants, especially in studies with diazotrophic bacteria. In this study, endophytic bacterial diversity of leaves, stems and roots of physic nut (Jatropha curcas) were studied using morphologic, physiological, biochemical and molecular markers, such as 16S rDNA. The samples were disinfected (removing epiphytic microorganisms), macerated and serially diluted to obtain the suspensions that were inoculated into culture media selective for diazotrophic microorganisms. The plates were incubated at 30°C for seven days. Forty-six colonie s were isolated, with 19 in the leaves, 11 in the stems and 16 in the roots. DNA of these endophytic bacteria purified was isolated, purified and the Y1-16S805 portion of the 16S rRNA gene was amplified and sequenced. Analysis of sequence identity were made by the programs BLASTn, CLUSTALW and phylogenetic analyzes by MEGA5. The roots showed greater diversity of endophytic microorganisms, with seven of the eight genera identified. In the leaves and in the stem, six genera were identified, respectively. In leaves, the exception was the genus Salmonella and Serratia. In the stem, Serratia, and in the roots more than one species of the genera Acinetobacter were found. The genera Bacillus and Burkholderia were found more frequently in all regions sampled. The genus Bacillus in the leaves, stems and roots accounted 20, 4 and 4%, respectively, of the total endophytic microorganisms identified. From the total isolates of the genus Bacillus, 73% belonged to the species B atrophaeus, B. brevis and B. sphaericus, the other 27% belonged to group B. cereus. These results suggest that the endophytic bacteria diversity of physic nut is large. Microorganisms identified in this work have potential for growth promotion, biological control and nitrogen fixation, as they were isolated in selective media with low concentration of nitrogen, in addition there are reports in the literature about the benefits of them for different plants.Os microrganismos endofíticos habitam o interior das plantas, sendo encontrados em órgãos e tecidos como folhas, caules e raízes sem causar doenças ou produzir estruturas externas visíveis. A comunidade endofítica é constituída principalmente por bactérias e fungos que ao contrário dos patogênicos, podem beneficiar as plantas, entretanto, dependendo das condições como interação entre comunidades bacterianas, competição por nutrientes, pode se tornar patogênica. A comunidade endofítica tem sido avaliada em muitas plantas, principalmente nos estudos com bactérias diazotróficas. No presente estudo, a diversidade bacteriana endofítica de folhas, colmos e raízes do pinhão manso (Jatropha curcas) foram estudadas utilizando marcadores morfológicos, fisiológicos, bioquímicos e molecular do tipo 16S rDNA. As amostras foram desinfectadas para eliminar os microrganismos epifíticos, maceradas e diluídas em série para a obtenção das suspensões, que foram inoculadas em meios de cultura seletivos para microrganismos diazotróficos. As placas foram incubadas a 30°C por sete dias. Quarenta e seis colônias de bactérias endofíticas purificadas foram isoladas sendo 19 nas folhas, 11 no caule e 16 nas raízes. O DNA dessas estirpes foi isolado, purificado e a porção Y1-16S805 do gene 16S rRNA foi amplificada e sequenciada. Análises de identidade das sequências foram feitas pelos programas BLASTn, CLUSTALW e análises filogenéticas pelo MEGA5. As raízes apresentaram maior diversidade de microrganismos endofíticos, com sete dos oito gêneros identificados. Nas folhas e no caule foram identificados seis gêneros, respectivamente. Nas folhas, a exceção foi os gêneros Salmonella e Serratia, no caule Serratia, já nas raízes foi o gênero Acinetobacter. Os gêneros Bacillus e Burkholderia foram encontrados com maior frequência em todas as regiões amostradas. O gênero Bacillus nas folhas, caule e raízes representou 20, 4 e 4%, respectivamente, do total de microrganismos endofíticos identificados. Do total de isolados do gênero Bacillus, 73% pertenciam as espécies B atrophaeus, B. brevis e B. sphaericus, os outros 27% pertenciam ao grupo B. cereus. Esses resultados sugerem que a diversidade bactériana endofítica do pinhão manso é grande. Os organismos identificados nesse trabalho têm potencial para promoção de crescimento, controle biológico e fixação de nitrogênio, por serem isolados em meios seletivos com baixa concentração de nitrogênio, além de existirem relatos na literatura sobre os benefícios dos mesmos para diferentes plantas.application/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Agroecologia e Desenvolvimento Rural - PPGADR-ArUFSCarBRAgroecologiaBactérias endofíticasMarcadores biológicosPinhão-mansoCrescimento (Plantas)Comunidade endofíticaPromoção do crescimentoCommunity endophyticMorphologicalPhysiological, Biochemical and molecular markersPhysic nutPromoting growthCIENCIAS AGRARIASOcorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)Occurrence of endophytic bacteria in culture of physic Nut (jatropha curcas l.)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-1-199bf90fd-2980-498b-894a-e69ebdfa8734info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINAL4754.pdfapplication/pdf2758448https://repositorio.ufscar.br/bitstream/ufscar/136/1/4754.pdfd835472f08e0eb0186e418b47de028a5MD51TEXT4754.pdf.txt4754.pdf.txtExtracted texttext/plain121660https://repositorio.ufscar.br/bitstream/ufscar/136/2/4754.pdf.txt0b21debf4b5ace82303754643f4a4ea2MD52THUMBNAIL4754.pdf.jpg4754.pdf.jpgIM Thumbnailimage/jpeg7336https://repositorio.ufscar.br/bitstream/ufscar/136/3/4754.pdf.jpgf27e675cfa2ef1a4ad0088a19a967f90MD53ufscar/1362023-09-18 18:31:16.809oai:repositorio.ufscar.br:ufscar/136Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:31:16Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
dc.title.alternative.eng.fl_str_mv Occurrence of endophytic bacteria in culture of physic Nut (jatropha curcas l.)
title Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
spellingShingle Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
Schmidt, Vitória Anselma
Agroecologia
Bactérias endofíticas
Marcadores biológicos
Pinhão-manso
Crescimento (Plantas)
Comunidade endofítica
Promoção do crescimento
Community endophytic
Morphological
Physiological, Biochemical and molecular markers
Physic nut
Promoting growth
CIENCIAS AGRARIAS
title_short Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
title_full Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
title_fullStr Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
title_full_unstemmed Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
title_sort Ocorrência de bactérias endofíticas na cultura do pinhão manso (Jatropha curcas L.)
author Schmidt, Vitória Anselma
author_facet Schmidt, Vitória Anselma
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/1013931203340055
dc.contributor.author.fl_str_mv Schmidt, Vitória Anselma
dc.contributor.advisor1.fl_str_mv Gerald, Lee Tseng Sheng
dc.contributor.advisor1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/controladorbuscacv
dc.contributor.authorID.fl_str_mv 0881e5cc-ed5a-4f42-8dbe-c8ed47c804cc
contributor_str_mv Gerald, Lee Tseng Sheng
dc.subject.por.fl_str_mv Agroecologia
Bactérias endofíticas
Marcadores biológicos
Pinhão-manso
Crescimento (Plantas)
Comunidade endofítica
Promoção do crescimento
topic Agroecologia
Bactérias endofíticas
Marcadores biológicos
Pinhão-manso
Crescimento (Plantas)
Comunidade endofítica
Promoção do crescimento
Community endophytic
Morphological
Physiological, Biochemical and molecular markers
Physic nut
Promoting growth
CIENCIAS AGRARIAS
dc.subject.eng.fl_str_mv Community endophytic
Morphological
Physiological, Biochemical and molecular markers
Physic nut
Promoting growth
dc.subject.cnpq.fl_str_mv CIENCIAS AGRARIAS
description The endophytic microorganisms inhabit the interior of the plants, being found in organs and tissues such as leaves, stems and roots without causing disease or producing visible external structures. The endophytic community consists mainly of bacteria and fungi that unlike pathogens, can benefit the plants, however, depending on conditions such as interaction between bacterial communities, competition for nutrients, it can become pathogenic. The endophytic community has been evaluated in many plants, especially in studies with diazotrophic bacteria. In this study, endophytic bacterial diversity of leaves, stems and roots of physic nut (Jatropha curcas) were studied using morphologic, physiological, biochemical and molecular markers, such as 16S rDNA. The samples were disinfected (removing epiphytic microorganisms), macerated and serially diluted to obtain the suspensions that were inoculated into culture media selective for diazotrophic microorganisms. The plates were incubated at 30°C for seven days. Forty-six colonie s were isolated, with 19 in the leaves, 11 in the stems and 16 in the roots. DNA of these endophytic bacteria purified was isolated, purified and the Y1-16S805 portion of the 16S rRNA gene was amplified and sequenced. Analysis of sequence identity were made by the programs BLASTn, CLUSTALW and phylogenetic analyzes by MEGA5. The roots showed greater diversity of endophytic microorganisms, with seven of the eight genera identified. In the leaves and in the stem, six genera were identified, respectively. In leaves, the exception was the genus Salmonella and Serratia. In the stem, Serratia, and in the roots more than one species of the genera Acinetobacter were found. The genera Bacillus and Burkholderia were found more frequently in all regions sampled. The genus Bacillus in the leaves, stems and roots accounted 20, 4 and 4%, respectively, of the total endophytic microorganisms identified. From the total isolates of the genus Bacillus, 73% belonged to the species B atrophaeus, B. brevis and B. sphaericus, the other 27% belonged to group B. cereus. These results suggest that the endophytic bacteria diversity of physic nut is large. Microorganisms identified in this work have potential for growth promotion, biological control and nitrogen fixation, as they were isolated in selective media with low concentration of nitrogen, in addition there are reports in the literature about the benefits of them for different plants.
publishDate 2012
dc.date.available.fl_str_mv 2012-12-19
2016-06-02T18:57:42Z
dc.date.issued.fl_str_mv 2012-08-02
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dc.identifier.citation.fl_str_mv SCHMIDT, Vitória Anselma. Occurrence of endophytic bacteria in culture of physic Nut (jatropha curcas l.). 2012. 82 f. Dissertação (Mestrado em Ciências Agrárias) - Universidade Federal de São Carlos, Araras, 2012.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/136
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