Análise das características estruturais do FAD em oxidorredutases

Detalhes bibliográficos
Autor(a) principal: Silva, Rui Filipe Nogueira da
Data de Publicação: 2015
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/7704
Resumo: In this work, oxidoreductases of the glutathione reductase (GR), trypanothione reductase (TR) and sulfhydryl oxidase (SOX) sub-subclasses that are FAD (flavin adenine dinucleotide) dependent enzymes and contain a group with sulfur as a charge acceptor/donor near the FAD isoalloxazine region were studied. Oxidoreductases are enzymes capable of catalyzing redox reactions, thus requiring donor groups and acceptor groups of charges. FAD is a cofactor of the oxidoreductases and participates in the enzymatic catalysis, brokering the transfer of charges between ligands and the polypeptide chain of the proteins. The thiol groups and disulfide bonds existing in the enzymes are, in many instances, involved in these transfer of protons and electrons together with the FAD. The conformation of the isoalloxazine region of the FAD and the π interactions between the sulfur atoms and the flavin region were studied. The crystal structures of 180 oxidoreductases with FAD and disulfide bonds retrieved from the Protein Data Bank (PDB) were analyzed, which allowed to set up some relationships between the bond lengths of the disulfide bridge in proteins and in small molecules, to determine the existence of deformations of the isoalloxazine moiety of the FAD, to measure the SG-π interaction distances and realize some FAD features that help differentiate the GR, TR and SOX sub-subclasses.
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spelling Silva, Rui Filipe Nogueira daCaracelli, Ignezhttp://lattes.cnpq.br/8956527354576143Schpector, Julio Zukermanhttp://lattes.cnpq.br/4252331837170383http://lattes.cnpq.br/77744653678942785587d7aa-5521-473c-a183-64367d0c309c2016-10-05T19:07:51Z2016-10-05T19:07:51Z2015-08-11SILVA, Rui Filipe Nogueira da. Análise das características estruturais do FAD em oxidorredutases. 2015. Dissertação (Mestrado em Biotecnologia) – Universidade Federal de São Carlos, São Carlos, 2015. Disponível em: https://repositorio.ufscar.br/handle/ufscar/7704.https://repositorio.ufscar.br/handle/ufscar/7704In this work, oxidoreductases of the glutathione reductase (GR), trypanothione reductase (TR) and sulfhydryl oxidase (SOX) sub-subclasses that are FAD (flavin adenine dinucleotide) dependent enzymes and contain a group with sulfur as a charge acceptor/donor near the FAD isoalloxazine region were studied. Oxidoreductases are enzymes capable of catalyzing redox reactions, thus requiring donor groups and acceptor groups of charges. FAD is a cofactor of the oxidoreductases and participates in the enzymatic catalysis, brokering the transfer of charges between ligands and the polypeptide chain of the proteins. The thiol groups and disulfide bonds existing in the enzymes are, in many instances, involved in these transfer of protons and electrons together with the FAD. The conformation of the isoalloxazine region of the FAD and the π interactions between the sulfur atoms and the flavin region were studied. The crystal structures of 180 oxidoreductases with FAD and disulfide bonds retrieved from the Protein Data Bank (PDB) were analyzed, which allowed to set up some relationships between the bond lengths of the disulfide bridge in proteins and in small molecules, to determine the existence of deformations of the isoalloxazine moiety of the FAD, to measure the SG-π interaction distances and realize some FAD features that help differentiate the GR, TR and SOX sub-subclasses.Neste trabalho foram estudadas oxidorredutases das sub-subclasses glutationa redutases (GR), tripanotiona redutases (TR) e sulfidril oxidases (SOX) que são enzimas dependentes de FAD (flavina adenina dinucleotídeo) e contêm um grupo com enxofre como aceitador/doador de cargas, próximo à região isoaloxazina do FAD. As oxidorredutases são enzimas capazes de catalisar reações redox, necessitando, para tal, de grupos doadores e grupos aceitadores de cargas. O FAD é um cofator das oxidorredutases e participa na catálise enzimática, intermediando a transferência de cargas entre ligantes e a cadeia polipeptídica das proteínas. Os grupos tiol e as ligações dissulfeto existentes nas enzimas estão, em muitos casos, envolvidos nessas transferências de prótons e elétrons em conjunto com o FAD. Foi realizado o estudo da conformação da região isoaloxazina do FAD e de interações π entre os átomos de enxofre e a flavina do FAD. Foram analisadas 180 estruturas cristalográficas de oxidorredutases com FAD e ligações dissulfeto obtidas do Protein Data Bank (PDB) o que permitiu relacionar os comprimentos da ligação dissulfeto em proteínas e em pequenas moléculas, classificar deformações da isoaloxazina do FAD, determinar distâncias de interação SG-π e perceber caraterísticas do FAD que permitem diferenciar as sub-subclasses de GR, TR e SOX.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)CNPq: 166636/2013-4porUniversidade Federal de São CarlosCâmpus São CarlosPrograma de Pós-Graduação em Biotecnologia - PPGBiotecUFSCarBiotecnologiaGlutationa redutaseOxidorredutasesTripanotiona redutaseFADπ interactionsDissulfideS-πOxidorreductasesGlutathione reductaseTrypanothione reductaseSulfhydryl oxidaseCIENCIAS EXATAS E DA TERRA::FISICACIENCIAS EXATAS E DA TERRA::QUIMICAAnálise das características estruturais do FAD em oxidorredutasesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisOnline60060047e03a6b-fe25-4518-a87c-1446ac9c0432info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINALDissRFNS.pdfDissRFNS.pdfapplication/pdf7648197https://repositorio.ufscar.br/bitstream/ufscar/7704/1/DissRFNS.pdf76ec1475a7603115854bee2c6dc347a5MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81957https://repositorio.ufscar.br/bitstream/ufscar/7704/2/license.txtae0398b6f8b235e40ad82cba6c50031dMD52TEXTDissRFNS.pdf.txtDissRFNS.pdf.txtExtracted texttext/plain209691https://repositorio.ufscar.br/bitstream/ufscar/7704/3/DissRFNS.pdf.txt3ca5e9412ce479a35a49cb2ebbdb072bMD53THUMBNAILDissRFNS.pdf.jpgDissRFNS.pdf.jpgIM Thumbnailimage/jpeg8468https://repositorio.ufscar.br/bitstream/ufscar/7704/4/DissRFNS.pdf.jpgf0a3bf4afa27243ae5a9643ca70e1ad2MD54ufscar/77042023-09-18 18:30:55.154oai:repositorio.ufscar.br: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Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:30:55Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Análise das características estruturais do FAD em oxidorredutases
title Análise das características estruturais do FAD em oxidorredutases
spellingShingle Análise das características estruturais do FAD em oxidorredutases
Silva, Rui Filipe Nogueira da
Biotecnologia
Glutationa redutase
Oxidorredutases
Tripanotiona redutase
FAD
π interactions
Dissulfide
S-π
Oxidorreductases
Glutathione reductase
Trypanothione reductase
Sulfhydryl oxidase
CIENCIAS EXATAS E DA TERRA::FISICA
CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Análise das características estruturais do FAD em oxidorredutases
title_full Análise das características estruturais do FAD em oxidorredutases
title_fullStr Análise das características estruturais do FAD em oxidorredutases
title_full_unstemmed Análise das características estruturais do FAD em oxidorredutases
title_sort Análise das características estruturais do FAD em oxidorredutases
author Silva, Rui Filipe Nogueira da
author_facet Silva, Rui Filipe Nogueira da
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/7774465367894278
dc.contributor.author.fl_str_mv Silva, Rui Filipe Nogueira da
dc.contributor.advisor1.fl_str_mv Caracelli, Ignez
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/8956527354576143
dc.contributor.advisor-co1.fl_str_mv Schpector, Julio Zukerman
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/4252331837170383
dc.contributor.authorID.fl_str_mv 5587d7aa-5521-473c-a183-64367d0c309c
contributor_str_mv Caracelli, Ignez
Schpector, Julio Zukerman
dc.subject.por.fl_str_mv Biotecnologia
Glutationa redutase
Oxidorredutases
Tripanotiona redutase
FAD
topic Biotecnologia
Glutationa redutase
Oxidorredutases
Tripanotiona redutase
FAD
π interactions
Dissulfide
S-π
Oxidorreductases
Glutathione reductase
Trypanothione reductase
Sulfhydryl oxidase
CIENCIAS EXATAS E DA TERRA::FISICA
CIENCIAS EXATAS E DA TERRA::QUIMICA
dc.subject.eng.fl_str_mv π interactions
Dissulfide
S-π
Oxidorreductases
Glutathione reductase
Trypanothione reductase
Sulfhydryl oxidase
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::FISICA
CIENCIAS EXATAS E DA TERRA::QUIMICA
description In this work, oxidoreductases of the glutathione reductase (GR), trypanothione reductase (TR) and sulfhydryl oxidase (SOX) sub-subclasses that are FAD (flavin adenine dinucleotide) dependent enzymes and contain a group with sulfur as a charge acceptor/donor near the FAD isoalloxazine region were studied. Oxidoreductases are enzymes capable of catalyzing redox reactions, thus requiring donor groups and acceptor groups of charges. FAD is a cofactor of the oxidoreductases and participates in the enzymatic catalysis, brokering the transfer of charges between ligands and the polypeptide chain of the proteins. The thiol groups and disulfide bonds existing in the enzymes are, in many instances, involved in these transfer of protons and electrons together with the FAD. The conformation of the isoalloxazine region of the FAD and the π interactions between the sulfur atoms and the flavin region were studied. The crystal structures of 180 oxidoreductases with FAD and disulfide bonds retrieved from the Protein Data Bank (PDB) were analyzed, which allowed to set up some relationships between the bond lengths of the disulfide bridge in proteins and in small molecules, to determine the existence of deformations of the isoalloxazine moiety of the FAD, to measure the SG-π interaction distances and realize some FAD features that help differentiate the GR, TR and SOX sub-subclasses.
publishDate 2015
dc.date.issued.fl_str_mv 2015-08-11
dc.date.accessioned.fl_str_mv 2016-10-05T19:07:51Z
dc.date.available.fl_str_mv 2016-10-05T19:07:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv SILVA, Rui Filipe Nogueira da. Análise das características estruturais do FAD em oxidorredutases. 2015. Dissertação (Mestrado em Biotecnologia) – Universidade Federal de São Carlos, São Carlos, 2015. Disponível em: https://repositorio.ufscar.br/handle/ufscar/7704.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/7704
identifier_str_mv SILVA, Rui Filipe Nogueira da. Análise das características estruturais do FAD em oxidorredutases. 2015. Dissertação (Mestrado em Biotecnologia) – Universidade Federal de São Carlos, São Carlos, 2015. Disponível em: https://repositorio.ufscar.br/handle/ufscar/7704.
url https://repositorio.ufscar.br/handle/ufscar/7704
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600
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dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
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dc.publisher.initials.fl_str_mv UFSCar
publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
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