Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas

Detalhes bibliográficos
Autor(a) principal: Hirayama, Silvia Naomi Soida
Data de Publicação: 2011
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/5483
Resumo: The desintegrinas are cys-rich polypeptides without enzymatic activity, some found in snake venoms with an adhesive motif to integrin, unleashing distinct responses. Several research groups have been studying snake venom disintegrins with focus in pharmacological applications in tumor progression and proliferation, angiogenesis, blood clotting, and osteoporosis. This work shows the results of the construction of cDNA library of Rhinocerophis alternatus venom gland, cloning and expression of ALT-C, a disintegrina-like protein, in bacterial system. The library was comprised of 812 sequences that were classified into: (i) coding for hypothetical protein or mismatched in databases (unknown) corresponding to 20.94%; (ii) transcripts for cellular process 17.86%; and (iii) transcripts coding for toxic protein with 61.21%. Among toxic proteins the SVMPs were the most abundant transcripts 58.59%. Other toxic transcripts were C-type lectins (15.56%), bradykinin potentiating peptides (11.8%), serineproteases (5.18%), cys-rich secretory proteins (2.28%), vascular endothelial growth factors (2.28%), L-amino acid oxidases (1.86%) and phospholipases A2 (1.45%). The percentages correspond to this snake venom effects, low enzymatic activity and hemorrhagic and clotting activity as main action, derived from the SVMPs, C-type lectin and serineproteases. One of the SVMPs contigs were chosen based on the similarity with ALT-C, the defined sequence was called ALT-Ch (ALT-C homologue) since there has 4 conservative substitutions compared to the previously determined sequence. The ALT-C-h sequence was used in PCR to inclusion the restriction site for BamHI and EcoRI, cloned in pGEX4T-1 and transformed into E. coli AD494 (DE3) for expression. The cell culture was grown until the log fase and induced with IPTG for 3 hours, the expressed protein's identity was confirmed by Western Blotting using Polyclonal antibody Anti-ALT-C. The construction of the R. alternatus venom gland cDNA library provides a source of interesting active biomolecules, such as desintegrinas, to pharmacological applications in pathologies involving integrins like angiogenesis, tumor progression and metastasis.
id SCAR_91e41e703d951922c782fbb082f9ce12
oai_identifier_str oai:repositorio.ufscar.br:ufscar/5483
network_acronym_str SCAR
network_name_str Repositório Institucional da UFSCAR
repository_id_str 4322
spelling Hirayama, Silvia Naomi SoidaAraújo, Heloísa Sobreiro Selistre dehttp://genos.cnpq.br:12010/dwlattes/owa/prc_imp_cv_int?f_cod=K4787059Y2http://lattes.cnpq.br/2334096835474916ee56c4ed-2747-4742-9eb7-a6bb9dd9d7d72016-06-02T20:21:25Z2011-03-172016-06-02T20:21:25Z2011-03-04HIRAYAMA, Silvia Naomi Soida. Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas. 2011. 87 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.https://repositorio.ufscar.br/handle/ufscar/5483The desintegrinas are cys-rich polypeptides without enzymatic activity, some found in snake venoms with an adhesive motif to integrin, unleashing distinct responses. Several research groups have been studying snake venom disintegrins with focus in pharmacological applications in tumor progression and proliferation, angiogenesis, blood clotting, and osteoporosis. This work shows the results of the construction of cDNA library of Rhinocerophis alternatus venom gland, cloning and expression of ALT-C, a disintegrina-like protein, in bacterial system. The library was comprised of 812 sequences that were classified into: (i) coding for hypothetical protein or mismatched in databases (unknown) corresponding to 20.94%; (ii) transcripts for cellular process 17.86%; and (iii) transcripts coding for toxic protein with 61.21%. Among toxic proteins the SVMPs were the most abundant transcripts 58.59%. Other toxic transcripts were C-type lectins (15.56%), bradykinin potentiating peptides (11.8%), serineproteases (5.18%), cys-rich secretory proteins (2.28%), vascular endothelial growth factors (2.28%), L-amino acid oxidases (1.86%) and phospholipases A2 (1.45%). The percentages correspond to this snake venom effects, low enzymatic activity and hemorrhagic and clotting activity as main action, derived from the SVMPs, C-type lectin and serineproteases. One of the SVMPs contigs were chosen based on the similarity with ALT-C, the defined sequence was called ALT-Ch (ALT-C homologue) since there has 4 conservative substitutions compared to the previously determined sequence. The ALT-C-h sequence was used in PCR to inclusion the restriction site for BamHI and EcoRI, cloned in pGEX4T-1 and transformed into E. coli AD494 (DE3) for expression. The cell culture was grown until the log fase and induced with IPTG for 3 hours, the expressed protein's identity was confirmed by Western Blotting using Polyclonal antibody Anti-ALT-C. The construction of the R. alternatus venom gland cDNA library provides a source of interesting active biomolecules, such as desintegrinas, to pharmacological applications in pathologies involving integrins like angiogenesis, tumor progression and metastasis.As desintegrinas são polipeptídeos sem atividade enzimática, ricos em cisteína, geralmente encontrados no veneno de serpentes, possuidoras de um motivo adesivo reconhecedor de integrinas antagonizando ou agonizando a atividade das mesmas. Diversos grupos de pesquisa vêm estudando desintegrinas de venenos de serpentes com o foco em aplicação farmacológica nos processos de progressão e proliferação tumoral, angiogênese, coagulação sanguínea, e osteoporose. Este trabalho apresenta os resultados da construção da biblioteca de cDNA da glândula venenífera de Rinocerophis alternatus e a clonagem e expressão da ALT-C, uma tipo desintegrina, em sistema bacteriano. A biblioteca foi composta por 812 sequências que foram classificadas em: (i) codificantes para proteínas hipotéticas ou sem equivalência nos bancos de dados (unknown) correspondendo a 20,94%; (ii) transcritos para produtos celulares 17,86%; e (iii) transcritos codificantes para proteínas tóxicas 61,21%. Dentre as proteínas tóxicas as SVMPs foram os transcritos mais abundantes com 58,59% dos compostos tóxicos do tecido. Os demais transcritos tóxicos encontrados foram as lectinas do tipo-C (15,56%), peptídeos potenciadores de bradicinina (11,8%), serinoproteases (5,18%), proteínas secretórias ricas em cisteína (2,28%), fatores de crescimento endotelial vascular (2,28%), L-aminoácido oxidases (1,86%) e fosfolipases A2 (1,45%). As percentagens encontradas correspondem aos efeitos do veneno dessa serpente, que possui baixa atividade enzimática e predominate ação hemorrágica e de alteração na coagulação sanguínea derivada da ação das SVMPs, lectinas do tipo-C e serinoproteases. Um dos contigs para SVMPs foi eleito pela similaridade com a ALT-C. A sequência determinada por esse contig foi denominada ALT-C-h (homóloga da ALT-C) por apresentar 4 substituições conservativas da sequência determinada anteriormente. A sequência foi utilizada em PCR para inclusão de sítio de restrição para BamHI e EcoRI, clonado em pGEX4T-1 e transformados em E. coli AD494(DE3) para ensaios de expressão. O cultivo foi crescido até a fase log e a indução expressão realizada com IPTG por 3 horas, a identidade da proteína expressa foi confirmada por western blotting utilizando anticorpo policlonal anti-ALT-C. A construção da biblioteca de cDNA da glândula venenífera de R. alternatus fornece uma fonte de estudo interessante de biomoléculas ativas nos venenos como, por exemplo, as desintegrinas visando aplicações farmacológicas para patologias envolvendo integrinas como angiogênese, progressão e metástase tumoral.Financiadora de Estudos e Projetosapplication/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEvUFSCarBRDNA recombinanteBiblioteca de cDNAMetaloproteaseAlternagina-CRhinocerophis alternatusCIENCIAS BIOLOGICAS::GENETICAAnálise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinasinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-1-1b61211db-d955-45b7-886e-a0cefb89980finfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINAL3461.pdfapplication/pdf3248917https://repositorio.ufscar.br/bitstream/ufscar/5483/1/3461.pdfb02925f28a9fc50ea71c3af6beebca5cMD51THUMBNAIL3461.pdf.jpg3461.pdf.jpgIM Thumbnailimage/jpeg8041https://repositorio.ufscar.br/bitstream/ufscar/5483/2/3461.pdf.jpgaf657db4852d9ff1bb62933be1fba5b1MD52ufscar/54832023-09-18 18:31:18.705oai:repositorio.ufscar.br:ufscar/5483Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:31:18Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
title Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
spellingShingle Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
Hirayama, Silvia Naomi Soida
DNA recombinante
Biblioteca de cDNA
Metaloprotease
Alternagina-C
Rhinocerophis alternatus
CIENCIAS BIOLOGICAS::GENETICA
title_short Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
title_full Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
title_fullStr Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
title_full_unstemmed Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
title_sort Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas
author Hirayama, Silvia Naomi Soida
author_facet Hirayama, Silvia Naomi Soida
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/2334096835474916
dc.contributor.author.fl_str_mv Hirayama, Silvia Naomi Soida
dc.contributor.advisor1.fl_str_mv Araújo, Heloísa Sobreiro Selistre de
dc.contributor.advisor1Lattes.fl_str_mv http://genos.cnpq.br:12010/dwlattes/owa/prc_imp_cv_int?f_cod=K4787059Y2
dc.contributor.authorID.fl_str_mv ee56c4ed-2747-4742-9eb7-a6bb9dd9d7d7
contributor_str_mv Araújo, Heloísa Sobreiro Selistre de
dc.subject.por.fl_str_mv DNA recombinante
Biblioteca de cDNA
Metaloprotease
Alternagina-C
Rhinocerophis alternatus
topic DNA recombinante
Biblioteca de cDNA
Metaloprotease
Alternagina-C
Rhinocerophis alternatus
CIENCIAS BIOLOGICAS::GENETICA
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::GENETICA
description The desintegrinas are cys-rich polypeptides without enzymatic activity, some found in snake venoms with an adhesive motif to integrin, unleashing distinct responses. Several research groups have been studying snake venom disintegrins with focus in pharmacological applications in tumor progression and proliferation, angiogenesis, blood clotting, and osteoporosis. This work shows the results of the construction of cDNA library of Rhinocerophis alternatus venom gland, cloning and expression of ALT-C, a disintegrina-like protein, in bacterial system. The library was comprised of 812 sequences that were classified into: (i) coding for hypothetical protein or mismatched in databases (unknown) corresponding to 20.94%; (ii) transcripts for cellular process 17.86%; and (iii) transcripts coding for toxic protein with 61.21%. Among toxic proteins the SVMPs were the most abundant transcripts 58.59%. Other toxic transcripts were C-type lectins (15.56%), bradykinin potentiating peptides (11.8%), serineproteases (5.18%), cys-rich secretory proteins (2.28%), vascular endothelial growth factors (2.28%), L-amino acid oxidases (1.86%) and phospholipases A2 (1.45%). The percentages correspond to this snake venom effects, low enzymatic activity and hemorrhagic and clotting activity as main action, derived from the SVMPs, C-type lectin and serineproteases. One of the SVMPs contigs were chosen based on the similarity with ALT-C, the defined sequence was called ALT-Ch (ALT-C homologue) since there has 4 conservative substitutions compared to the previously determined sequence. The ALT-C-h sequence was used in PCR to inclusion the restriction site for BamHI and EcoRI, cloned in pGEX4T-1 and transformed into E. coli AD494 (DE3) for expression. The cell culture was grown until the log fase and induced with IPTG for 3 hours, the expressed protein's identity was confirmed by Western Blotting using Polyclonal antibody Anti-ALT-C. The construction of the R. alternatus venom gland cDNA library provides a source of interesting active biomolecules, such as desintegrinas, to pharmacological applications in pathologies involving integrins like angiogenesis, tumor progression and metastasis.
publishDate 2011
dc.date.available.fl_str_mv 2011-03-17
2016-06-02T20:21:25Z
dc.date.issued.fl_str_mv 2011-03-04
dc.date.accessioned.fl_str_mv 2016-06-02T20:21:25Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv HIRAYAMA, Silvia Naomi Soida. Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas. 2011. 87 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/5483
identifier_str_mv HIRAYAMA, Silvia Naomi Soida. Análise do transcriptoma da glândula venenífera de Rhinocerophis alternatus (Bothrops alternatus): identificação de metaloproteases e desintegrinas. 2011. 87 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.
url https://repositorio.ufscar.br/handle/ufscar/5483
dc.language.iso.fl_str_mv por
language por
dc.relation.confidence.fl_str_mv -1
-1
dc.relation.authority.fl_str_mv b61211db-d955-45b7-886e-a0cefb89980f
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEv
dc.publisher.initials.fl_str_mv UFSCar
dc.publisher.country.fl_str_mv BR
publisher.none.fl_str_mv Universidade Federal de São Carlos
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFSCAR
instname:Universidade Federal de São Carlos (UFSCAR)
instacron:UFSCAR
instname_str Universidade Federal de São Carlos (UFSCAR)
instacron_str UFSCAR
institution UFSCAR
reponame_str Repositório Institucional da UFSCAR
collection Repositório Institucional da UFSCAR
bitstream.url.fl_str_mv https://repositorio.ufscar.br/bitstream/ufscar/5483/1/3461.pdf
https://repositorio.ufscar.br/bitstream/ufscar/5483/2/3461.pdf.jpg
bitstream.checksum.fl_str_mv b02925f28a9fc50ea71c3af6beebca5c
af657db4852d9ff1bb62933be1fba5b1
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)
repository.mail.fl_str_mv
_version_ 1802136285758881792