Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae)
Autor(a) principal: | |
---|---|
Data de Publicação: | 2011 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFSCAR |
Texto Completo: | https://repositorio.ufscar.br/handle/ufscar/5496 |
Resumo: | The Tephritidae includes approximately 4500 species described to date and many of these species make up the main genera of economic importance: Anastrepha, Bactrocera and Ceratitis. The genus Anastrepha is among the Tephritidae with greatest diversity in the Americas including 230 described species, among which some species with great economic importance because they represent important fruit pests. There is evidence that species in the fraterculus group have diverged recently, even having some cryptic species. Because of this, species in the fraterculus group are a great system for evolutionary studies. For evolutionary studies, it is necessary to evaluate the rates of molecular evolution and their role in identifying rates of gene flow and population differentiation, the construction of tree species and a possible separation for the species. Seeking a better understanding of the fraterculus group, we chose three species of this group, Anastrepha obliqua, A. fraterculus and A. sororcula as models for this study and five genes isolated from a cDNA library of reproductive tissues of Anastrepha. Several genes that are expressed in reproductive tissues have a higher divergence rate THAN those expressed in non-reproductive tissues, may thus give evidence of reproductive isolation. In this work, we found evidence of positive diversifying and positive selection for a couple of genes (CG11912 and CG10031), and high levels of polymorphism, although they failed to meet statistical significance for positive selection, in other genes here studied, such as ,Lcp65Ac and CG16712, whereas Df31 was more conserved. An analysis of molecular variance found that levels of genetic polymorphism are best explained by differences between species THAN between geographic regions. Haplotype networks for each gene failed to differentiate the species here studied and showed high levels of shared polymorphism among the species, with some rare exceptions. On the other hand, a joint analysis of these data to try to infer a species tree indicate a strong cohesion for populations of A. obliqua from the Brazilian Northeast and Southeast while for A. fraterculus and A. sororcula we observed a substructure that separated Southeeast populations of A. sororcula, which was well defined, from Northeast populations, which may be hybridizing with populations of A. fraterculus from the Northeast, due to great number of shared polymorphisms. Other THAN populations in the Brazilian northeast, A. fraterculus also forms a separate, though short, lineage. Considering these findings, a broader sampling is needed, especially in areas not yet collected particularly in the Northeast, seeking to untangle the phylogenetic relationships not only among these species, but also other species of the fraterculus group. |
id |
SCAR_985676718c0d5dc13b4b98ad14d99e0e |
---|---|
oai_identifier_str |
oai:repositorio.ufscar.br:ufscar/5496 |
network_acronym_str |
SCAR |
network_name_str |
Repositório Institucional da UFSCAR |
repository_id_str |
4322 |
spelling |
Lima, André Luís AndradeBrito, Reinaldo Alves dehttp://lattes.cnpq.br/8253066295947754http://lattes.cnpq.br/1981887385414775011400f1-00ae-4a87-aebd-b4e818501a4a2016-06-02T20:21:28Z2012-02-152016-06-02T20:21:28Z2011-12-19LIMA, André Luís Andrade. Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae). 2011. 73 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011.https://repositorio.ufscar.br/handle/ufscar/5496The Tephritidae includes approximately 4500 species described to date and many of these species make up the main genera of economic importance: Anastrepha, Bactrocera and Ceratitis. The genus Anastrepha is among the Tephritidae with greatest diversity in the Americas including 230 described species, among which some species with great economic importance because they represent important fruit pests. There is evidence that species in the fraterculus group have diverged recently, even having some cryptic species. Because of this, species in the fraterculus group are a great system for evolutionary studies. For evolutionary studies, it is necessary to evaluate the rates of molecular evolution and their role in identifying rates of gene flow and population differentiation, the construction of tree species and a possible separation for the species. Seeking a better understanding of the fraterculus group, we chose three species of this group, Anastrepha obliqua, A. fraterculus and A. sororcula as models for this study and five genes isolated from a cDNA library of reproductive tissues of Anastrepha. Several genes that are expressed in reproductive tissues have a higher divergence rate THAN those expressed in non-reproductive tissues, may thus give evidence of reproductive isolation. In this work, we found evidence of positive diversifying and positive selection for a couple of genes (CG11912 and CG10031), and high levels of polymorphism, although they failed to meet statistical significance for positive selection, in other genes here studied, such as ,Lcp65Ac and CG16712, whereas Df31 was more conserved. An analysis of molecular variance found that levels of genetic polymorphism are best explained by differences between species THAN between geographic regions. Haplotype networks for each gene failed to differentiate the species here studied and showed high levels of shared polymorphism among the species, with some rare exceptions. On the other hand, a joint analysis of these data to try to infer a species tree indicate a strong cohesion for populations of A. obliqua from the Brazilian Northeast and Southeast while for A. fraterculus and A. sororcula we observed a substructure that separated Southeeast populations of A. sororcula, which was well defined, from Northeast populations, which may be hybridizing with populations of A. fraterculus from the Northeast, due to great number of shared polymorphisms. Other THAN populations in the Brazilian northeast, A. fraterculus also forms a separate, though short, lineage. Considering these findings, a broader sampling is needed, especially in areas not yet collected particularly in the Northeast, seeking to untangle the phylogenetic relationships not only among these species, but also other species of the fraterculus group.Os Tephritidae incluem aproximadamente 4500 espécies já descritas e muitas destas espécies compõem os principais gêneros de importância econômica: Anastrepha, Bactrocera e Ceratitis. O gênero Anastrepha é, entre Tephritidae, o que possui maior diversidade nas Américas incluindo 230 espécies descritas, dentre as quais algumas espécies apresentam grande importância econômica por representarem importantes pestes da fruticultura. Há evidências de espécies que constituem o grupo fraterculus terem divergido há pouco tempo apresentando ainda algumas espécies crípticas. Devido a esta característica em particular, espécies do grupo fraterculus apresentam uma grande vantagem para estudos evolutivos. Para realizar estudos evolutivos torna-se necessário avaliar as taxas de evolução molecular bem como seu papel na identificação de taxas de fluxo gênico e diferenciação populacional, a construção de árvores de espécie e uma possível separação das espécies. Buscando um melhor entendimento do grupo fraterculus, escolhemos três espécies constituintes desse grupo, Anastrepha obliqua, Anastrepha. fraterculus e Anastrepha. sororcula, como modelos para este estudo e cinco genes isolados de biblioteca de cDNA de tecidos reprodutivos de espécies de Anastrepha. Diversos genes que são expressos em tecidos reprodutivos apresentam uma taxa de divergência maior do que os expressos em tecidos não reprodutivos, podendo assim dar indícios de isolamento reprodutivo. Neste trabalho encontramos essas características em genes que indicam seleção positiva (CG11912 e CG10031), e os demais genes que embora não tenham apresentado significância estatística para serem considerados possuidores de seleção positiva, no entanto apresentam terem regiões potencialmente sob seleção positiva direcional para Df31 e Lcp65Ac e seleção positiva diversificadora para os genes Df31 e CG16712. Na análise de variância molecular encontramos que a diferenciação espacial é mais bem explicada pelas diferenças entre as espécies do que entre regiões geográficas. As redes haplotípicas e árvores de espécies indicam uma forte coesão entre as populações de A. obliqua do Nordeste e Sudeste indicando ausência de estruturação genética para esta espécie enquanto para A. fraterculus e A. sororcula foi encontrado uma sub estruturação que separa A. sororcula do Nordeste e A. sororcula do Sudeste, sendo que A. sororcula do nordeste pode estar hibridizando com A. fraterculus do Nordeste. As análises de migração encontraram migrações diferenciais para estas espécies, colocando A. obliqua mais isolada das demais e uma relação mais próxima entre A. fraterculus e A. sororcula. De frente aos resultados encontrados neste trabalho fica claro a necessidade de uma maior amostragem, principalmente em áreas ainda não coletadas entre as regiões amostradas na tentativa de buscar entender não apenas quais são as possíveis relações entre A. fraterculus e A. sororcula mas também entre outras espécies do grupo fraterculus.Universidade Federal de Minas Geraisapplication/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEvUFSCarBRGenética e evoluçãoTephritidaeAnastrephaEvolução molecularAnálise multilocusTephritidaeAnastrephaMolecular evolutionMultilocus analysisCIENCIAS BIOLOGICAS::GENETICAEvolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-1-1e4ebf16c-a933-4cae-b428-d05e5cc0dc96info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINAL4084.pdfapplication/pdf6015722https://repositorio.ufscar.br/bitstream/ufscar/5496/1/4084.pdf35112ba46f0915602cf01b2a6f292699MD51THUMBNAIL4084.pdf.jpg4084.pdf.jpgIM Thumbnailimage/jpeg6477https://repositorio.ufscar.br/bitstream/ufscar/5496/2/4084.pdf.jpg7a0024daf9683420940e0f551873c0aeMD52ufscar/54962023-09-18 18:31:07.652oai:repositorio.ufscar.br:ufscar/5496Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:31:07Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false |
dc.title.por.fl_str_mv |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
title |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
spellingShingle |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) Lima, André Luís Andrade Genética e evolução Tephritidae Anastrepha Evolução molecular Análise multilocus Tephritidae Anastrepha Molecular evolution Multilocus analysis CIENCIAS BIOLOGICAS::GENETICA |
title_short |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
title_full |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
title_fullStr |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
title_full_unstemmed |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
title_sort |
Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae) |
author |
Lima, André Luís Andrade |
author_facet |
Lima, André Luís Andrade |
author_role |
author |
dc.contributor.authorlattes.por.fl_str_mv |
http://lattes.cnpq.br/1981887385414775 |
dc.contributor.author.fl_str_mv |
Lima, André Luís Andrade |
dc.contributor.advisor1.fl_str_mv |
Brito, Reinaldo Alves de |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/8253066295947754 |
dc.contributor.authorID.fl_str_mv |
011400f1-00ae-4a87-aebd-b4e818501a4a |
contributor_str_mv |
Brito, Reinaldo Alves de |
dc.subject.por.fl_str_mv |
Genética e evolução Tephritidae Anastrepha Evolução molecular Análise multilocus |
topic |
Genética e evolução Tephritidae Anastrepha Evolução molecular Análise multilocus Tephritidae Anastrepha Molecular evolution Multilocus analysis CIENCIAS BIOLOGICAS::GENETICA |
dc.subject.eng.fl_str_mv |
Tephritidae Anastrepha Molecular evolution Multilocus analysis |
dc.subject.cnpq.fl_str_mv |
CIENCIAS BIOLOGICAS::GENETICA |
description |
The Tephritidae includes approximately 4500 species described to date and many of these species make up the main genera of economic importance: Anastrepha, Bactrocera and Ceratitis. The genus Anastrepha is among the Tephritidae with greatest diversity in the Americas including 230 described species, among which some species with great economic importance because they represent important fruit pests. There is evidence that species in the fraterculus group have diverged recently, even having some cryptic species. Because of this, species in the fraterculus group are a great system for evolutionary studies. For evolutionary studies, it is necessary to evaluate the rates of molecular evolution and their role in identifying rates of gene flow and population differentiation, the construction of tree species and a possible separation for the species. Seeking a better understanding of the fraterculus group, we chose three species of this group, Anastrepha obliqua, A. fraterculus and A. sororcula as models for this study and five genes isolated from a cDNA library of reproductive tissues of Anastrepha. Several genes that are expressed in reproductive tissues have a higher divergence rate THAN those expressed in non-reproductive tissues, may thus give evidence of reproductive isolation. In this work, we found evidence of positive diversifying and positive selection for a couple of genes (CG11912 and CG10031), and high levels of polymorphism, although they failed to meet statistical significance for positive selection, in other genes here studied, such as ,Lcp65Ac and CG16712, whereas Df31 was more conserved. An analysis of molecular variance found that levels of genetic polymorphism are best explained by differences between species THAN between geographic regions. Haplotype networks for each gene failed to differentiate the species here studied and showed high levels of shared polymorphism among the species, with some rare exceptions. On the other hand, a joint analysis of these data to try to infer a species tree indicate a strong cohesion for populations of A. obliqua from the Brazilian Northeast and Southeast while for A. fraterculus and A. sororcula we observed a substructure that separated Southeeast populations of A. sororcula, which was well defined, from Northeast populations, which may be hybridizing with populations of A. fraterculus from the Northeast, due to great number of shared polymorphisms. Other THAN populations in the Brazilian northeast, A. fraterculus also forms a separate, though short, lineage. Considering these findings, a broader sampling is needed, especially in areas not yet collected particularly in the Northeast, seeking to untangle the phylogenetic relationships not only among these species, but also other species of the fraterculus group. |
publishDate |
2011 |
dc.date.issued.fl_str_mv |
2011-12-19 |
dc.date.available.fl_str_mv |
2012-02-15 2016-06-02T20:21:28Z |
dc.date.accessioned.fl_str_mv |
2016-06-02T20:21:28Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
LIMA, André Luís Andrade. Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae). 2011. 73 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011. |
dc.identifier.uri.fl_str_mv |
https://repositorio.ufscar.br/handle/ufscar/5496 |
identifier_str_mv |
LIMA, André Luís Andrade. Evolução molecular, análise multilocus e diferenciação entre espécies do grupo fraterculus (Diptera, Tephritidae). 2011. 73 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2011. |
url |
https://repositorio.ufscar.br/handle/ufscar/5496 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.confidence.fl_str_mv |
-1 -1 |
dc.relation.authority.fl_str_mv |
e4ebf16c-a933-4cae-b428-d05e5cc0dc96 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de São Carlos |
dc.publisher.program.fl_str_mv |
Programa de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEv |
dc.publisher.initials.fl_str_mv |
UFSCar |
dc.publisher.country.fl_str_mv |
BR |
publisher.none.fl_str_mv |
Universidade Federal de São Carlos |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFSCAR instname:Universidade Federal de São Carlos (UFSCAR) instacron:UFSCAR |
instname_str |
Universidade Federal de São Carlos (UFSCAR) |
instacron_str |
UFSCAR |
institution |
UFSCAR |
reponame_str |
Repositório Institucional da UFSCAR |
collection |
Repositório Institucional da UFSCAR |
bitstream.url.fl_str_mv |
https://repositorio.ufscar.br/bitstream/ufscar/5496/1/4084.pdf https://repositorio.ufscar.br/bitstream/ufscar/5496/2/4084.pdf.jpg |
bitstream.checksum.fl_str_mv |
35112ba46f0915602cf01b2a6f292699 7a0024daf9683420940e0f551873c0ae |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR) |
repository.mail.fl_str_mv |
|
_version_ |
1813715544179736576 |