Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios

Detalhes bibliográficos
Autor(a) principal: Baptistini, Natália
Data de Publicação: 2015
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/7554
Resumo: In this work are presented the in silico study of the formation of complexes between organochalcogens compounds with enzymes COX-1 and COX-2 that were carried out in order to study their potential to act as selective inhibitors of COX-2 and thus as anti-inflammatories, as well as the results of in vitro and in vivo experiments of this activity. There were modeled and studied 15 organochalcogens compounds and their enantiomers, with a structure similar to that of the selective drug celecoxib. Compounds 2-(phenylseleno)-2-(2-ethyl-X)acetophenones-4’Y-substituted , with Y = H, Br, CH3, OCH3, NO2 and X = SO2, SO, S, were modeled using as starting point the crystallographic structure of the compound with Y = Br and X = SO. The three dimensional structures of the COX-1 and COX-2 enzymes were obtained from the PDB. The results of the molecular docking calculations were evaluated considering the patterns of orientations/conformations, intermolecular interactions, π interactions and scores. The results of these experiments allowed to propose a mechanism of action as well as a preferred bonding mode that would explain the activity of these compounds as possible inhibitors of COX-2, which is a condition necessary to act as anti-inflammatory. In particular, the compound where Y = OCH3 and X = SO2 (5-OCH3) being selective to COX-2 is the one with the best chances to act as an anti-inflammatory. This is because the OCH3 substituent occupied the S1 subsite of the enzyme, maintaining the interaction with His90 and the SO2 moiety interacts with the Tyr355, an important amino acid for the metabolism of the COX-2 substrate, the arachidonic acid. The other interactions made by the compound, such as π interactions, are important for fixing the ligand in the active site, although they are not directly related to its selectivity. The experiments in vitro and in vivo confirm the in silico results, as the enzyme immunoassay showed that this compound exhibits greater inhibition of COX-2 relative to COX-1. Furthermore, the activity of the 5-OCH3 compound was evaluated with the classical models of edema formation, that is the carrageenan and zymosan induced inflammation in the rat paw, resulting in a significant reduction in paw thickness after two hours and decreasing of the temperature after one hour of the application of the anti-inflammatory agent. As the best results were obtained for the model of paw edema elicited by carrageenan this suggests that the compound acts better in the case of acute inflammation.
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spelling Baptistini, NatáliaCaracelli, Ignezhttp://lattes.cnpq.br/8956527354576143http://lattes.cnpq.br/896635969036844416dc0503-ee93-4080-be8a-945d7a7cec2a2016-09-27T20:08:56Z2016-09-27T20:08:56Z2015-06-30BAPTISTINI, Natália. Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios. 2015. Dissertação (Mestrado em Biotecnologia) – Universidade Federal de São Carlos, São Carlos, 2015. Disponível em: https://repositorio.ufscar.br/handle/ufscar/7554.https://repositorio.ufscar.br/handle/ufscar/7554In this work are presented the in silico study of the formation of complexes between organochalcogens compounds with enzymes COX-1 and COX-2 that were carried out in order to study their potential to act as selective inhibitors of COX-2 and thus as anti-inflammatories, as well as the results of in vitro and in vivo experiments of this activity. There were modeled and studied 15 organochalcogens compounds and their enantiomers, with a structure similar to that of the selective drug celecoxib. Compounds 2-(phenylseleno)-2-(2-ethyl-X)acetophenones-4’Y-substituted , with Y = H, Br, CH3, OCH3, NO2 and X = SO2, SO, S, were modeled using as starting point the crystallographic structure of the compound with Y = Br and X = SO. The three dimensional structures of the COX-1 and COX-2 enzymes were obtained from the PDB. The results of the molecular docking calculations were evaluated considering the patterns of orientations/conformations, intermolecular interactions, π interactions and scores. The results of these experiments allowed to propose a mechanism of action as well as a preferred bonding mode that would explain the activity of these compounds as possible inhibitors of COX-2, which is a condition necessary to act as anti-inflammatory. In particular, the compound where Y = OCH3 and X = SO2 (5-OCH3) being selective to COX-2 is the one with the best chances to act as an anti-inflammatory. This is because the OCH3 substituent occupied the S1 subsite of the enzyme, maintaining the interaction with His90 and the SO2 moiety interacts with the Tyr355, an important amino acid for the metabolism of the COX-2 substrate, the arachidonic acid. The other interactions made by the compound, such as π interactions, are important for fixing the ligand in the active site, although they are not directly related to its selectivity. The experiments in vitro and in vivo confirm the in silico results, as the enzyme immunoassay showed that this compound exhibits greater inhibition of COX-2 relative to COX-1. Furthermore, the activity of the 5-OCH3 compound was evaluated with the classical models of edema formation, that is the carrageenan and zymosan induced inflammation in the rat paw, resulting in a significant reduction in paw thickness after two hours and decreasing of the temperature after one hour of the application of the anti-inflammatory agent. As the best results were obtained for the model of paw edema elicited by carrageenan this suggests that the compound acts better in the case of acute inflammation.Neste trabalho são apresentados o estudo in silico da formação de complexos entre compostos organocalcogênios e as enzimas COX-1 e COX-2 realizado com o objetivo de estudar seu potencial para atuar como inibidores seletivos da COX-2, e portanto como anti-inflamatórios, bem como os resultados dos experimentos in vitro e in vivo desta atividade. Na presente pesquisa, foram modelados e estudados 15 compostos organocalcogênios e seus enantiômeros, com estrutura similar à do fármaco seletivo celecoxibe. Os compostos da família 2-(fenilseleno)-2-(etil-X)acetofenonas-4’Y-substituídas, com Y = H, Br, CH3, OCH3, NO2 e X = SO2, SO, S, foram modelados tendo como ponto de partida a estrutura cristalográfica do composto da mesma família com Y = Br e X= SO. As estruturas tridimensionais das enzimas COX-1 e COX-2 foram obtidas no PDB. Os resultados dos cálculos de docking molecular foram avaliados considerando-se o padrão de orientações/conformações, as interações intermoleculares, as interações π e os escores. OS resultados desses experimentos permitiram propor um mecanismo de ação, bem como um modo de ligação preferencial para explicar a atuação desses compostos como possíveis inibidores da COX-2, condição necessária para atuar como anti-inflamatório. Em particular, o composto com Y = OCH3 e X = SO2 (5-OCH3) é o que apresentou o melhor potencial para atuar como anti-inflamatório, sendo seletivo à COX-2. Isto porque o substituinte OCH3 ocupou o subsítio S1 dessa enzima, mantendo a interação com a His90 e o grupo SO2, apresentou interação com a Tyr355, aminoácido importante para o metabolismo do substrato da COX-2, o ácido araquidônico. As outras interações feitas pelo composto, como as interações π, são importantes para fixação do ligante ao sítio ativo, embora não estejam diretamente ligadas com a sua seletividade. Os experimentos in vitro e in vivo permitiram confirmar os resultados dos experimentos in silico, uma vez que o ensaio imunoenzimático mostrou que este composto apresenta maior inibição da COX-2 em relação à COX-1. Ainda, a atividade do composto 5-OCH3 foi avaliada em modelo de edema de pata induzido por carragenina e zymosan, como agentes irritantes, resultando em uma diminuição significativa da espessura das patas após duas horas e diminuição da temperatura após uma hora da aplicação do agente anti-inflamatório. Uma vez que os melhores resultados foram obtidos para o modelo do edema de pata com a carragenina isto sugere o composto atua melhor no caso da inflamação aguda.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)porUniversidade Federal de São CarlosCâmpus São CarlosPrograma de Pós-Graduação em Biotecnologia - PPGBiotecUFSCarCOX-2organocalchogensmolecular dockingantiinflamatoriesBiotecnologiaCiclooxigenaseAnti-inflamatórioDocking molecularOrganocalcogêniosOUTROS::CIENCIASAnálise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatóriosinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisOnline60060047e03a6b-fe25-4518-a87c-1446ac9c0432info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINALTeseNB.pdfTeseNB.pdfapplication/pdf25264059https://repositorio.ufscar.br/bitstream/ufscar/7554/1/TeseNB.pdff823e6e565d3555a5d49056afd7c39feMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81957https://repositorio.ufscar.br/bitstream/ufscar/7554/2/license.txtae0398b6f8b235e40ad82cba6c50031dMD52TEXTTeseNB.pdf.txtTeseNB.pdf.txtExtracted texttext/plain292692https://repositorio.ufscar.br/bitstream/ufscar/7554/3/TeseNB.pdf.txt56a22ab3541d3f4a933dea9bd4ed044fMD53THUMBNAILTeseNB.pdf.jpgTeseNB.pdf.jpgIM Thumbnailimage/jpeg5130https://repositorio.ufscar.br/bitstream/ufscar/7554/4/TeseNB.pdf.jpgcd3a7a9531b70fe8a49dc6436ea3fe54MD54ufscar/75542023-09-18 18:30:51.649oai:repositorio.ufscar.br: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Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:30:51Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
title Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
spellingShingle Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
Baptistini, Natália
COX-2
organocalchogens
molecular docking
antiinflamatories
Biotecnologia
Ciclooxigenase
Anti-inflamatório
Docking molecular
Organocalcogênios
OUTROS::CIENCIAS
title_short Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
title_full Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
title_fullStr Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
title_full_unstemmed Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
title_sort Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios
author Baptistini, Natália
author_facet Baptistini, Natália
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/8966359690368444
dc.contributor.author.fl_str_mv Baptistini, Natália
dc.contributor.advisor1.fl_str_mv Caracelli, Ignez
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/8956527354576143
dc.contributor.authorID.fl_str_mv 16dc0503-ee93-4080-be8a-945d7a7cec2a
contributor_str_mv Caracelli, Ignez
dc.subject.eng.fl_str_mv COX-2
organocalchogens
molecular docking
antiinflamatories
topic COX-2
organocalchogens
molecular docking
antiinflamatories
Biotecnologia
Ciclooxigenase
Anti-inflamatório
Docking molecular
Organocalcogênios
OUTROS::CIENCIAS
dc.subject.por.fl_str_mv Biotecnologia
Ciclooxigenase
Anti-inflamatório
Docking molecular
Organocalcogênios
dc.subject.cnpq.fl_str_mv OUTROS::CIENCIAS
description In this work are presented the in silico study of the formation of complexes between organochalcogens compounds with enzymes COX-1 and COX-2 that were carried out in order to study their potential to act as selective inhibitors of COX-2 and thus as anti-inflammatories, as well as the results of in vitro and in vivo experiments of this activity. There were modeled and studied 15 organochalcogens compounds and their enantiomers, with a structure similar to that of the selective drug celecoxib. Compounds 2-(phenylseleno)-2-(2-ethyl-X)acetophenones-4’Y-substituted , with Y = H, Br, CH3, OCH3, NO2 and X = SO2, SO, S, were modeled using as starting point the crystallographic structure of the compound with Y = Br and X = SO. The three dimensional structures of the COX-1 and COX-2 enzymes were obtained from the PDB. The results of the molecular docking calculations were evaluated considering the patterns of orientations/conformations, intermolecular interactions, π interactions and scores. The results of these experiments allowed to propose a mechanism of action as well as a preferred bonding mode that would explain the activity of these compounds as possible inhibitors of COX-2, which is a condition necessary to act as anti-inflammatory. In particular, the compound where Y = OCH3 and X = SO2 (5-OCH3) being selective to COX-2 is the one with the best chances to act as an anti-inflammatory. This is because the OCH3 substituent occupied the S1 subsite of the enzyme, maintaining the interaction with His90 and the SO2 moiety interacts with the Tyr355, an important amino acid for the metabolism of the COX-2 substrate, the arachidonic acid. The other interactions made by the compound, such as π interactions, are important for fixing the ligand in the active site, although they are not directly related to its selectivity. The experiments in vitro and in vivo confirm the in silico results, as the enzyme immunoassay showed that this compound exhibits greater inhibition of COX-2 relative to COX-1. Furthermore, the activity of the 5-OCH3 compound was evaluated with the classical models of edema formation, that is the carrageenan and zymosan induced inflammation in the rat paw, resulting in a significant reduction in paw thickness after two hours and decreasing of the temperature after one hour of the application of the anti-inflammatory agent. As the best results were obtained for the model of paw edema elicited by carrageenan this suggests that the compound acts better in the case of acute inflammation.
publishDate 2015
dc.date.issued.fl_str_mv 2015-06-30
dc.date.accessioned.fl_str_mv 2016-09-27T20:08:56Z
dc.date.available.fl_str_mv 2016-09-27T20:08:56Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv BAPTISTINI, Natália. Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios. 2015. Dissertação (Mestrado em Biotecnologia) – Universidade Federal de São Carlos, São Carlos, 2015. Disponível em: https://repositorio.ufscar.br/handle/ufscar/7554.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/7554
identifier_str_mv BAPTISTINI, Natália. Análise in silico, in vitro e in vivo de compostos organocalcogênios como possíveis anti-inflamatórios. 2015. Dissertação (Mestrado em Biotecnologia) – Universidade Federal de São Carlos, São Carlos, 2015. Disponível em: https://repositorio.ufscar.br/handle/ufscar/7554.
url https://repositorio.ufscar.br/handle/ufscar/7554
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dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
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