Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum

Detalhes bibliográficos
Autor(a) principal: Fill, Taícia Pacheco
Data de Publicação: 2014
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/6298
Resumo: The project "Metabolic, enzymatic and genetic studies of the endophytic fungus P. brasilianum" resulted in biosynthetic studies of bisphenylpropanoid amides, the brasilimides, confirming the origin of these substances via phenylpropanoid biosynthesis pathway, very unusual in fungi. PAL activity, the first enzyme involved in this biosynthetic route was successfully evaluated and the conditions of PAL production by P. brasilianum were optimized (culture medium and induction of PAL adding Phe to the culture), and the incubation conditions of the enzymatic reaction. The specificity of the PAL enzyme was studied, and the enzyme showed activity toward all substrates tested, including acting as TAL (tyrosine ammonia lyase). In vivo studies throught the addition of different substrates lead to N-acetylation confirmed by spectroscopy data. The genome of the fungus P. brasilianum was sequenced, and extensive studies through bioinformatics lead to the gene encoding PAL enzyme. From molecular biology studies, the enzyme was cloned and expressed as recombinant PAL fused to a SUMO protein and a his-tag at the N- terminus of the protein in pETSUMO vector expressed in E. coli BL21 (DE3) to obtain the best conditions for enzyme overexpression in its soluble form. The purification process of the recombinant enzyme was studied from a single purification step (affinity chromatography) by pH gradient elution, obtaining a high degree of purity confirmed by one-dimensional electrophoresis. The pure recombinant PAL enzyme obtained was characterized by MS and biochemically yielding Km values of 4,8 mM. Recent studies seem to point out that there is a relationship between the production of brasiliamides when the fungus is subjected to stress conditions. The PAL enzyme appears to be involved in defense mechanisms in this fungus, as has been described for plants.
id SCAR_abc35b8023e9c1b199d436f3107ae9e5
oai_identifier_str oai:repositorio.ufscar.br:ufscar/6298
network_acronym_str SCAR
network_name_str Repositório Institucional da UFSCAR
repository_id_str 4322
spelling Fill, Taícia PachecoRodrigues Filho, Edsonhttp://lattes.cnpq.br/3667941735597178http://lattes.cnpq.br/07416383797071548e5be67e-894c-48a2-94a3-701e47160b772016-06-02T20:34:51Z2014-07-072016-06-02T20:34:51Z2014-03-31FILL, Taícia Pacheco. Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum. 2014. 1 f. Tese (Doutorado em Ciências Exatas e da Terra) - Universidade Federal de São Carlos, São Carlos, 2014.https://repositorio.ufscar.br/handle/ufscar/6298The project "Metabolic, enzymatic and genetic studies of the endophytic fungus P. brasilianum" resulted in biosynthetic studies of bisphenylpropanoid amides, the brasilimides, confirming the origin of these substances via phenylpropanoid biosynthesis pathway, very unusual in fungi. PAL activity, the first enzyme involved in this biosynthetic route was successfully evaluated and the conditions of PAL production by P. brasilianum were optimized (culture medium and induction of PAL adding Phe to the culture), and the incubation conditions of the enzymatic reaction. The specificity of the PAL enzyme was studied, and the enzyme showed activity toward all substrates tested, including acting as TAL (tyrosine ammonia lyase). In vivo studies throught the addition of different substrates lead to N-acetylation confirmed by spectroscopy data. The genome of the fungus P. brasilianum was sequenced, and extensive studies through bioinformatics lead to the gene encoding PAL enzyme. From molecular biology studies, the enzyme was cloned and expressed as recombinant PAL fused to a SUMO protein and a his-tag at the N- terminus of the protein in pETSUMO vector expressed in E. coli BL21 (DE3) to obtain the best conditions for enzyme overexpression in its soluble form. The purification process of the recombinant enzyme was studied from a single purification step (affinity chromatography) by pH gradient elution, obtaining a high degree of purity confirmed by one-dimensional electrophoresis. The pure recombinant PAL enzyme obtained was characterized by MS and biochemically yielding Km values of 4,8 mM. Recent studies seem to point out that there is a relationship between the production of brasiliamides when the fungus is subjected to stress conditions. The PAL enzyme appears to be involved in defense mechanisms in this fungus, as has been described for plants.O projeto "Estudos metabólicos, enzimáticos e genéticos do fungo endofítico P. brasilianum" tratou de investigações biossintéticas das amidas bisfenilpropanoídicas, as brasiliamidas, confirmando a origem fenilpropanoídica destas substâncias, muito incomum em fungos. A atividade da enzima Fenilalanina amônia-liase, primeira da rota biossintética, foi avaliada pela primeira vez no fungo em estudo, e as condições da produção de PAL por P. brasilianum foram otimizadas (meio de cultivo e indução ao adicionar fenilalanina ao cultivo), assim como as condições de incubação da reação enzimática. A especificidade da enzima foi determinada a qual se apresentou altamente promíscua em todos os substratos testados, inclusive atuando como TAL (tirosina amônia-liase). In vivo, a adição de diferentes precursores ao meio de cultivo levou a N-acetilação destes confirmado por dados espectroscópicos. O genoma do fungo P. brasilianum foi sequenciado, e através de extensos estudos de bioinformática pode-se determinar o gene que codifica a enzima PAL. A partir de estudos de biologia molecular foi possível clonar e expressar a enzima PAL recombinante fusionada a uma proteína SUMO e uma cauda polihis no N-terminal da proteína em vetor pETSUMO expresso em E. coli BL21(DE3) obtendo-se, dessa maneira, as melhores condições para superexpressão enzimática na forma solúvel. O processo de purificação da enzima recombinante foi estudado a partir de um único passo de purificação (coluna de afinidade) por gradiente de pH, obtendo alto grau de pureza comprovado através de eletroforese monodimensional. A enzima PAL recombinante pura obtida foi caracterizada por MS e bioquimicamente obtendose valores de Km de 4,8 mM. Estudos parecem deixar claro que exista uma relação entre a produção de brasiliamida A quando o fungo é submetido a situações de estresse, seguindo mesmo comportamento relatado em plantas e, portanto, a enzima PAL parece estar envolvida em mecanismos de defesa neste fungo.Universidade Federal de Minas Geraisapplication/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Química - PPGQUFSCarBRBiossínteseProdutos naturaisBrasiliamidasFenilalanina amônia-liaseFungos endofíticosPenicillium brasilianumCIENCIAS EXATAS E DA TERRA::QUIMICAEstudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianuminfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis-1-138736a86-d071-4ee1-8969-144f8d20b7ccinfo:eu-repo/semantics/embargoedAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINAL5838.pdf5838.pdfapplication/pdf52675833https://repositorio.ufscar.br/bitstream/ufscar/6298/1/5838.pdf22738b1cb2a81cc44530ec8ae77b2ff5MD51TEXT5838.pdf.txt5838.pdf.txtExtracted texttext/plain0https://repositorio.ufscar.br/bitstream/ufscar/6298/2/5838.pdf.txtd41d8cd98f00b204e9800998ecf8427eMD52THUMBNAIL5838.pdf.jpg5838.pdf.jpgIM Thumbnailimage/jpeg9537https://repositorio.ufscar.br/bitstream/ufscar/6298/3/5838.pdf.jpg1ea89cb58a6178d36257854fddbb5d97MD53ufscar/62982023-09-18 18:30:43.731oai:repositorio.ufscar.br:ufscar/6298Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:30:43Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
title Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
spellingShingle Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
Fill, Taícia Pacheco
Biossíntese
Produtos naturais
Brasiliamidas
Fenilalanina amônia-liase
Fungos endofíticos
Penicillium brasilianum
CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
title_full Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
title_fullStr Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
title_full_unstemmed Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
title_sort Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum
author Fill, Taícia Pacheco
author_facet Fill, Taícia Pacheco
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/0741638379707154
dc.contributor.author.fl_str_mv Fill, Taícia Pacheco
dc.contributor.advisor1.fl_str_mv Rodrigues Filho, Edson
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/3667941735597178
dc.contributor.authorID.fl_str_mv 8e5be67e-894c-48a2-94a3-701e47160b77
contributor_str_mv Rodrigues Filho, Edson
dc.subject.por.fl_str_mv Biossíntese
Produtos naturais
Brasiliamidas
Fenilalanina amônia-liase
Fungos endofíticos
topic Biossíntese
Produtos naturais
Brasiliamidas
Fenilalanina amônia-liase
Fungos endofíticos
Penicillium brasilianum
CIENCIAS EXATAS E DA TERRA::QUIMICA
dc.subject.lat.fl_str_mv Penicillium brasilianum
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::QUIMICA
description The project "Metabolic, enzymatic and genetic studies of the endophytic fungus P. brasilianum" resulted in biosynthetic studies of bisphenylpropanoid amides, the brasilimides, confirming the origin of these substances via phenylpropanoid biosynthesis pathway, very unusual in fungi. PAL activity, the first enzyme involved in this biosynthetic route was successfully evaluated and the conditions of PAL production by P. brasilianum were optimized (culture medium and induction of PAL adding Phe to the culture), and the incubation conditions of the enzymatic reaction. The specificity of the PAL enzyme was studied, and the enzyme showed activity toward all substrates tested, including acting as TAL (tyrosine ammonia lyase). In vivo studies throught the addition of different substrates lead to N-acetylation confirmed by spectroscopy data. The genome of the fungus P. brasilianum was sequenced, and extensive studies through bioinformatics lead to the gene encoding PAL enzyme. From molecular biology studies, the enzyme was cloned and expressed as recombinant PAL fused to a SUMO protein and a his-tag at the N- terminus of the protein in pETSUMO vector expressed in E. coli BL21 (DE3) to obtain the best conditions for enzyme overexpression in its soluble form. The purification process of the recombinant enzyme was studied from a single purification step (affinity chromatography) by pH gradient elution, obtaining a high degree of purity confirmed by one-dimensional electrophoresis. The pure recombinant PAL enzyme obtained was characterized by MS and biochemically yielding Km values of 4,8 mM. Recent studies seem to point out that there is a relationship between the production of brasiliamides when the fungus is subjected to stress conditions. The PAL enzyme appears to be involved in defense mechanisms in this fungus, as has been described for plants.
publishDate 2014
dc.date.available.fl_str_mv 2014-07-07
2016-06-02T20:34:51Z
dc.date.issued.fl_str_mv 2014-03-31
dc.date.accessioned.fl_str_mv 2016-06-02T20:34:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv FILL, Taícia Pacheco. Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum. 2014. 1 f. Tese (Doutorado em Ciências Exatas e da Terra) - Universidade Federal de São Carlos, São Carlos, 2014.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/6298
identifier_str_mv FILL, Taícia Pacheco. Estudos metabólicos, enzimáticos e genéticos do fungo endofítico Penicillium brasilianum. 2014. 1 f. Tese (Doutorado em Ciências Exatas e da Terra) - Universidade Federal de São Carlos, São Carlos, 2014.
url https://repositorio.ufscar.br/handle/ufscar/6298
dc.language.iso.fl_str_mv por
language por
dc.relation.confidence.fl_str_mv -1
-1
dc.relation.authority.fl_str_mv 38736a86-d071-4ee1-8969-144f8d20b7cc
dc.rights.driver.fl_str_mv info:eu-repo/semantics/embargoedAccess
eu_rights_str_mv embargoedAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Química - PPGQ
dc.publisher.initials.fl_str_mv UFSCar
dc.publisher.country.fl_str_mv BR
publisher.none.fl_str_mv Universidade Federal de São Carlos
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFSCAR
instname:Universidade Federal de São Carlos (UFSCAR)
instacron:UFSCAR
instname_str Universidade Federal de São Carlos (UFSCAR)
instacron_str UFSCAR
institution UFSCAR
reponame_str Repositório Institucional da UFSCAR
collection Repositório Institucional da UFSCAR
bitstream.url.fl_str_mv https://repositorio.ufscar.br/bitstream/ufscar/6298/1/5838.pdf
https://repositorio.ufscar.br/bitstream/ufscar/6298/2/5838.pdf.txt
https://repositorio.ufscar.br/bitstream/ufscar/6298/3/5838.pdf.jpg
bitstream.checksum.fl_str_mv 22738b1cb2a81cc44530ec8ae77b2ff5
d41d8cd98f00b204e9800998ecf8427e
1ea89cb58a6178d36257854fddbb5d97
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)
repository.mail.fl_str_mv
_version_ 1802136293335891968