Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)

Detalhes bibliográficos
Autor(a) principal: Rosa, Keila de Cassia Coelho
Data de Publicação: 2016
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/10257
Resumo: Molecular biology techniques, such as DNA sequencing to verify genetic polymorphisms, have been increasingly used in taxonomy studies and phylogenetic systematics. The mitochondrial gene cytochrome oxidase I (COI), chosen to be a universal marker of barcode of life (DNA barcoding), has been used in the identification of many living organisms, as well as for intraspecific variability studies, find cryptic species, among other uses. Phylogenetic studies generally combine two or more markers to increase the resolution at different taxonomic levels. Therefore, in this study, these techniques were employed to help taxonomy and phylogeny studies of scale insect species belonging to the Ceroplastinae Atkinson (Hemiptera: Coccidae). In the first chapter, DNA barcoding sequences were generated for four new species of the genus Ceroplastes Gray that were described morphologically. The integrated use of genetic and morphological data facilitated the establishment of the species, despite the phenotypic variability presented by some of the species. In the second chapter, fragments of COI and 28S genes were used to confirm that the Ceroplastes glomeratus Peronti species has two different forms, changing the behavior and morphological characters in different generations. In the third chapter, the molecular data obtained by sequencing of small fragments of COI and 28S genes grouped were used to construct phylogenetic hypothesis among the Ceroplastinae species studied here, testing groups that have been proposed previously for some species with distribution in the state of São Paulo, applying the methods of maximum likelihood and Bayesin inference.
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spelling Rosa, Keila de Cassia CoelhoSilva, Carlos Roberto Sousa ehttp://lattes.cnpq.br/4890369735136839Peronti, Ana Lucia Benfatti Gonzalezhttp://lattes.cnpq.br/4064576183554693http://lattes.cnpq.br/69846403359583212d6fd826-d68d-4cce-87e7-00cc53a55e032018-07-04T12:11:42Z2018-07-04T12:11:42Z2016-08-29ROSA, Keila de Cassia Coelho. Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae). 2016. Tese (Doutorado em Ecologia e Recursos Naturais) – Universidade Federal de São Carlos, São Carlos, 2016. Disponível em: https://repositorio.ufscar.br/handle/ufscar/10257.https://repositorio.ufscar.br/handle/ufscar/10257Molecular biology techniques, such as DNA sequencing to verify genetic polymorphisms, have been increasingly used in taxonomy studies and phylogenetic systematics. The mitochondrial gene cytochrome oxidase I (COI), chosen to be a universal marker of barcode of life (DNA barcoding), has been used in the identification of many living organisms, as well as for intraspecific variability studies, find cryptic species, among other uses. Phylogenetic studies generally combine two or more markers to increase the resolution at different taxonomic levels. Therefore, in this study, these techniques were employed to help taxonomy and phylogeny studies of scale insect species belonging to the Ceroplastinae Atkinson (Hemiptera: Coccidae). In the first chapter, DNA barcoding sequences were generated for four new species of the genus Ceroplastes Gray that were described morphologically. The integrated use of genetic and morphological data facilitated the establishment of the species, despite the phenotypic variability presented by some of the species. In the second chapter, fragments of COI and 28S genes were used to confirm that the Ceroplastes glomeratus Peronti species has two different forms, changing the behavior and morphological characters in different generations. In the third chapter, the molecular data obtained by sequencing of small fragments of COI and 28S genes grouped were used to construct phylogenetic hypothesis among the Ceroplastinae species studied here, testing groups that have been proposed previously for some species with distribution in the state of São Paulo, applying the methods of maximum likelihood and Bayesin inference.Técnicas de biologia molecular, como o sequenciamento do DNA para verificar polimorfismos genéticos, vem sendo cada vez mais empregadas em estudos de taxonomia e sistemática filogenética. O gene mitocondrial citocromo oxidase I (COI), escolhido para ser o marcador universal do código de barras da vida (DNA barcoding), vem sendo usado na identificação de inúmeros organismos vivos, bem como para estudos de variabilidade intra-específica, descobrimento de espécies crípticas, entre outros usos. Estudos de filogenia geralmente combinam dois ou mais marcadores para aumentar a resolução em diferentes níveis taxonômicos. Portanto, neste trabalho, estas técnicas foram empregadas para auxiliar os estudos de taxonomia e filogenia de espécies de cochonilhas pertencentes à Ceroplastinae Atkinson (Hemiptera: Coccidae). No primeiro capítulo, sequências de DNA barcoding foram geradas para quatro novas espécies do gênero Ceroplastes Gray que foram descritas morfologicamente. O uso integrado dos dados genéticos e morfológicos facilitou o estabelecimento das espécies, apesar das variabilidades fenotípicas de algumas espécies. No segundo capítulo, fragmentos dos genes COI e 28S foram utilizados para confirmar que a espécie Ceroplastes glomeratus Peronti apresenta duas formas diferentes, variando o comportamento e os caracteres morfológicos nas diferentes gerações. No terceiro capítulo, os dados moleculares obtidos pelo sequenciamento de pequenos fragmentos dos genes COI e 28S agrupados, foram utilizados para elaborar hipótese filogenética entre as espécies de Ceroplastinae aqui estudadas, testando-se os agrupamentos propostos anteriormente para espécies com distribuição no estado de São Paulo, através dos métodos de máxima verossimilhança e inferência Bayesina.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)porUniversidade Federal de São CarlosCâmpus São CarlosPrograma de Pós-Graduação em Ecologia e Recursos Naturais - PPGERNUFSCarCochonilhas cerosasDNA barcodingCeroplastesWax scalesCIENCIAS BIOLOGICAS::ECOLOGIAFragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisOnline60060058682d0b-8b2d-4ad6-b412-be1c500e04a9info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINALTeseKCCR.pdfTeseKCCR.pdfapplication/pdf13802929https://repositorio.ufscar.br/bitstream/ufscar/10257/1/TeseKCCR.pdf36220609347f971e4c9157b7578ce411MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81957https://repositorio.ufscar.br/bitstream/ufscar/10257/2/license.txtae0398b6f8b235e40ad82cba6c50031dMD52TEXTTeseKCCR.pdf.txtTeseKCCR.pdf.txtExtracted texttext/plain165820https://repositorio.ufscar.br/bitstream/ufscar/10257/3/TeseKCCR.pdf.txtb1d9641c07d0a7e181864a6ed278d812MD53THUMBNAILTeseKCCR.pdf.jpgTeseKCCR.pdf.jpgIM Thumbnailimage/jpeg6773https://repositorio.ufscar.br/bitstream/ufscar/10257/4/TeseKCCR.pdf.jpgcb148b63b859ee339038513773092f7dMD54ufscar/102572023-09-18 18:31:15.723oai:repositorio.ufscar.br:ufscar/10257TElDRU7Dh0EgREUgRElTVFJJQlVJw4fDg08gTsODTy1FWENMVVNJVkEKCkNvbSBhIGFwcmVzZW50YcOnw6NvIGRlc3RhIGxpY2Vuw6dhLCB2b2PDqiAobyBhdXRvciAoZXMpIG91IG8gdGl0dWxhciBkb3MgZGlyZWl0b3MgZGUgYXV0b3IpIGNvbmNlZGUgw6AgVW5pdmVyc2lkYWRlCkZlZGVyYWwgZGUgU8OjbyBDYXJsb3MgbyBkaXJlaXRvIG7Do28tZXhjbHVzaXZvIGRlIHJlcHJvZHV6aXIsICB0cmFkdXppciAoY29uZm9ybWUgZGVmaW5pZG8gYWJhaXhvKSwgZS9vdQpkaXN0cmlidWlyIGEgc3VhIHRlc2Ugb3UgZGlzc2VydGHDp8OjbyAoaW5jbHVpbmRvIG8gcmVzdW1vKSBwb3IgdG9kbyBvIG11bmRvIG5vIGZvcm1hdG8gaW1wcmVzc28gZSBlbGV0csO0bmljbyBlCmVtIHF1YWxxdWVyIG1laW8sIGluY2x1aW5kbyBvcyBmb3JtYXRvcyDDoXVkaW8gb3UgdsOtZGVvLgoKVm9jw6ogY29uY29yZGEgcXVlIGEgVUZTQ2FyIHBvZGUsIHNlbSBhbHRlcmFyIG8gY29udGXDumRvLCB0cmFuc3BvciBhIHN1YSB0ZXNlIG91IGRpc3NlcnRhw6fDo28KcGFyYSBxdWFscXVlciBtZWlvIG91IGZvcm1hdG8gcGFyYSBmaW5zIGRlIHByZXNlcnZhw6fDo28uCgpWb2PDqiB0YW1iw6ltIGNvbmNvcmRhIHF1ZSBhIFVGU0NhciBwb2RlIG1hbnRlciBtYWlzIGRlIHVtYSBjw7NwaWEgYSBzdWEgdGVzZSBvdQpkaXNzZXJ0YcOnw6NvIHBhcmEgZmlucyBkZSBzZWd1cmFuw6dhLCBiYWNrLXVwIGUgcHJlc2VydmHDp8Ojby4KClZvY8OqIGRlY2xhcmEgcXVlIGEgc3VhIHRlc2Ugb3UgZGlzc2VydGHDp8OjbyDDqSBvcmlnaW5hbCBlIHF1ZSB2b2PDqiB0ZW0gbyBwb2RlciBkZSBjb25jZWRlciBvcyBkaXJlaXRvcyBjb250aWRvcwpuZXN0YSBsaWNlbsOnYS4gVm9jw6ogdGFtYsOpbSBkZWNsYXJhIHF1ZSBvIGRlcMOzc2l0byBkYSBzdWEgdGVzZSBvdSBkaXNzZXJ0YcOnw6NvIG7Do28sIHF1ZSBzZWphIGRlIHNldQpjb25oZWNpbWVudG8sIGluZnJpbmdlIGRpcmVpdG9zIGF1dG9yYWlzIGRlIG5pbmd1w6ltLgoKQ2FzbyBhIHN1YSB0ZXNlIG91IGRpc3NlcnRhw6fDo28gY29udGVuaGEgbWF0ZXJpYWwgcXVlIHZvY8OqIG7Do28gcG9zc3VpIGEgdGl0dWxhcmlkYWRlIGRvcyBkaXJlaXRvcyBhdXRvcmFpcywgdm9jw6oKZGVjbGFyYSBxdWUgb2J0ZXZlIGEgcGVybWlzc8OjbyBpcnJlc3RyaXRhIGRvIGRldGVudG9yIGRvcyBkaXJlaXRvcyBhdXRvcmFpcyBwYXJhIGNvbmNlZGVyIMOgIFVGU0NhcgpvcyBkaXJlaXRvcyBhcHJlc2VudGFkb3MgbmVzdGEgbGljZW7Dp2EsIGUgcXVlIGVzc2UgbWF0ZXJpYWwgZGUgcHJvcHJpZWRhZGUgZGUgdGVyY2Vpcm9zIGVzdMOhIGNsYXJhbWVudGUKaWRlbnRpZmljYWRvIGUgcmVjb25oZWNpZG8gbm8gdGV4dG8gb3Ugbm8gY29udGXDumRvIGRhIHRlc2Ugb3UgZGlzc2VydGHDp8OjbyBvcmEgZGVwb3NpdGFkYS4KCkNBU08gQSBURVNFIE9VIERJU1NFUlRBw4fDg08gT1JBIERFUE9TSVRBREEgVEVOSEEgU0lETyBSRVNVTFRBRE8gREUgVU0gUEFUUk9Dw41OSU8gT1UKQVBPSU8gREUgVU1BIEFHw4pOQ0lBIERFIEZPTUVOVE8gT1UgT1VUUk8gT1JHQU5JU01PIFFVRSBOw4NPIFNFSkEgQSBVRlNDYXIsClZPQ8OKIERFQ0xBUkEgUVVFIFJFU1BFSVRPVSBUT0RPUyBFIFFVQUlTUVVFUiBESVJFSVRPUyBERSBSRVZJU8ODTyBDT01PClRBTULDiU0gQVMgREVNQUlTIE9CUklHQcOHw5VFUyBFWElHSURBUyBQT1IgQ09OVFJBVE8gT1UgQUNPUkRPLgoKQSBVRlNDYXIgc2UgY29tcHJvbWV0ZSBhIGlkZW50aWZpY2FyIGNsYXJhbWVudGUgbyBzZXUgbm9tZSAocykgb3UgbyhzKSBub21lKHMpIGRvKHMpCmRldGVudG9yKGVzKSBkb3MgZGlyZWl0b3MgYXV0b3JhaXMgZGEgdGVzZSBvdSBkaXNzZXJ0YcOnw6NvLCBlIG7Do28gZmFyw6EgcXVhbHF1ZXIgYWx0ZXJhw6fDo28sIGFsw6ltIGRhcXVlbGFzCmNvbmNlZGlkYXMgcG9yIGVzdGEgbGljZW7Dp2EuCg==Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:31:15Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
title Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
spellingShingle Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
Rosa, Keila de Cassia Coelho
Cochonilhas cerosas
DNA barcoding
Ceroplastes
Wax scales
CIENCIAS BIOLOGICAS::ECOLOGIA
title_short Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
title_full Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
title_fullStr Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
title_full_unstemmed Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
title_sort Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae)
author Rosa, Keila de Cassia Coelho
author_facet Rosa, Keila de Cassia Coelho
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/6984640335958321
dc.contributor.author.fl_str_mv Rosa, Keila de Cassia Coelho
dc.contributor.advisor1.fl_str_mv Silva, Carlos Roberto Sousa e
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/4890369735136839
dc.contributor.advisor-co1.fl_str_mv Peronti, Ana Lucia Benfatti Gonzalez
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/4064576183554693
dc.contributor.authorID.fl_str_mv 2d6fd826-d68d-4cce-87e7-00cc53a55e03
contributor_str_mv Silva, Carlos Roberto Sousa e
Peronti, Ana Lucia Benfatti Gonzalez
dc.subject.por.fl_str_mv Cochonilhas cerosas
topic Cochonilhas cerosas
DNA barcoding
Ceroplastes
Wax scales
CIENCIAS BIOLOGICAS::ECOLOGIA
dc.subject.eng.fl_str_mv DNA barcoding
Ceroplastes
Wax scales
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::ECOLOGIA
description Molecular biology techniques, such as DNA sequencing to verify genetic polymorphisms, have been increasingly used in taxonomy studies and phylogenetic systematics. The mitochondrial gene cytochrome oxidase I (COI), chosen to be a universal marker of barcode of life (DNA barcoding), has been used in the identification of many living organisms, as well as for intraspecific variability studies, find cryptic species, among other uses. Phylogenetic studies generally combine two or more markers to increase the resolution at different taxonomic levels. Therefore, in this study, these techniques were employed to help taxonomy and phylogeny studies of scale insect species belonging to the Ceroplastinae Atkinson (Hemiptera: Coccidae). In the first chapter, DNA barcoding sequences were generated for four new species of the genus Ceroplastes Gray that were described morphologically. The integrated use of genetic and morphological data facilitated the establishment of the species, despite the phenotypic variability presented by some of the species. In the second chapter, fragments of COI and 28S genes were used to confirm that the Ceroplastes glomeratus Peronti species has two different forms, changing the behavior and morphological characters in different generations. In the third chapter, the molecular data obtained by sequencing of small fragments of COI and 28S genes grouped were used to construct phylogenetic hypothesis among the Ceroplastinae species studied here, testing groups that have been proposed previously for some species with distribution in the state of São Paulo, applying the methods of maximum likelihood and Bayesin inference.
publishDate 2016
dc.date.issued.fl_str_mv 2016-08-29
dc.date.accessioned.fl_str_mv 2018-07-04T12:11:42Z
dc.date.available.fl_str_mv 2018-07-04T12:11:42Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv ROSA, Keila de Cassia Coelho. Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae). 2016. Tese (Doutorado em Ecologia e Recursos Naturais) – Universidade Federal de São Carlos, São Carlos, 2016. Disponível em: https://repositorio.ufscar.br/handle/ufscar/10257.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/10257
identifier_str_mv ROSA, Keila de Cassia Coelho. Fragmentos de DNA mitocondrial e nuclear nos estudos de taxonomia e filogenia de Ceroplastinae Atkinson (Hemiptera: Coccidae). 2016. Tese (Doutorado em Ecologia e Recursos Naturais) – Universidade Federal de São Carlos, São Carlos, 2016. Disponível em: https://repositorio.ufscar.br/handle/ufscar/10257.
url https://repositorio.ufscar.br/handle/ufscar/10257
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600
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dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Ecologia e Recursos Naturais - PPGERN
dc.publisher.initials.fl_str_mv UFSCar
publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
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