Bayesian variable selection using data driven reversible jump: an application to schizophrenia data

Detalhes bibliográficos
Autor(a) principal: Montcho, Djidenou Hans Amos
Data de Publicação: 2021
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/15526
Resumo: Symptom based diagnosis are known to be limited specially concerning complex disorders such as schizophrenia. Modern attempts in providing predictive risk for such disease, to assist existing diagnosis tools, integrate genetic and brain information in what is known as imaging genetics. In this monography, our goal is both inferential and predictive. Regarding the inference, given the functional Magnetic Resonance Image and the Single Nucleotide Polymorphisms information of people diagnosed with schizophrenia and healthy people, we use a Bayesian probit model to select discriminating variables, while to estimate the predictive risk, the most promising models are combined using a Bayesian model averaging scheme. For these purposes, we propose an adaptive reversible jump markov chain monte carlo, named data driven reversible jump, for selecting the variables, estimating their effects and the predictive risk for future subjects.
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spelling Montcho, Djidenou Hans AmosMilan, Luis Aparecidohttp://lattes.cnpq.br/7435391829973844Zuanetti, Daiane Aparecidahttp://lattes.cnpq.br/8352484284929824http://lattes.cnpq.br/3071157876961214816dcf41-18a4-43fc-9a9e-847a5980ddcf2022-02-01T11:25:20Z2022-02-01T11:25:20Z2021-12-17MONTCHO, Djidenou Hans Amos. Bayesian variable selection using data driven reversible jump: an application to schizophrenia data. 2021. Dissertação (Mestrado em Estatística) – Universidade Federal de São Carlos, São Carlos, 2021. Disponível em: https://repositorio.ufscar.br/handle/ufscar/15526.https://repositorio.ufscar.br/handle/ufscar/15526Symptom based diagnosis are known to be limited specially concerning complex disorders such as schizophrenia. Modern attempts in providing predictive risk for such disease, to assist existing diagnosis tools, integrate genetic and brain information in what is known as imaging genetics. In this monography, our goal is both inferential and predictive. Regarding the inference, given the functional Magnetic Resonance Image and the Single Nucleotide Polymorphisms information of people diagnosed with schizophrenia and healthy people, we use a Bayesian probit model to select discriminating variables, while to estimate the predictive risk, the most promising models are combined using a Bayesian model averaging scheme. For these purposes, we propose an adaptive reversible jump markov chain monte carlo, named data driven reversible jump, for selecting the variables, estimating their effects and the predictive risk for future subjects.Diagnósticos médicos baseados em sintomas são conhecidos por suas limitações, especialmente no entendimento de distúrbios complexos como esquizofrenia. Abordagens modernas e complementares para predizer o risco de tais doenças integram dados genômicos e cerebrais. Nesta monografia, nosso objetivo é inferencial e preditivo. Na inferência, com base em dados de ressonância magnética funcional e de polimorfismo de nucleotídeo único obtidos de pessoas saudáveis e diagnosticadas com esquizofrenia, utilizamos um modelo probito Bayesiano para selecionar as variáveis mais importantes a fim de discriminar os pacientes. Para estimar o risco preditivo, os modelos mais promissores são combinados usando a ponderação bayesiana de modelos. Para estas finalidades, propomos o algoritmo de saltos reversíveis orientado pelos dados para realizar a seleção de variáveis, estimação de parâmetros dos modelos e predição para futuros pacientes.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Codigo de financiamento 001engUniversidade Federal de São CarlosCâmpus São CarlosPrograma Interinstitucional de Pós-Graduação em Estatística - PIPGEsUFSCarAttribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessSchizophreniaGeneticsInformed reversible jumpBayesian inferenceVariable selectionMCMCEsquizofreniaGenéticaInferência BayesianaSeleção de variáveisCIENCIAS EXATAS E DA TERRA::PROBABILIDADE E ESTATISTICABayesian variable selection using data driven reversible jump: an application to schizophrenia dataSeleção Bayesiana de variáveis usando o algoritmo de saltos reversíveis direcionado pelos dados: uma aplicação a dados de esquizofreniainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis60060001874dfd-bd1b-409c-81e8-3185c83eacf2reponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINALdissertacao_djidenou_ufscar.pdfdissertacao_djidenou_ufscar.pdfDissertação de mestradoapplication/pdf464510https://repositorio.ufscar.br/bitstream/ufscar/15526/1/dissertacao_djidenou_ufscar.pdf9d70ab4d0f594572b08cf93692809bc2MD51Carta-comprovante PIPGEs.pdfCarta-comprovante PIPGEs.pdfcarta comprovanteapplication/pdf151941https://repositorio.ufscar.br/bitstream/ufscar/15526/3/Carta-comprovante%20PIPGEs.pdf6000af2fc4a3f1231f9d9bb2ab1ed4edMD53CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8811https://repositorio.ufscar.br/bitstream/ufscar/15526/5/license_rdfe39d27027a6cc9cb039ad269a5db8e34MD55TEXTdissertacao_djidenou_ufscar.pdf.txtdissertacao_djidenou_ufscar.pdf.txtExtracted texttext/plain116511https://repositorio.ufscar.br/bitstream/ufscar/15526/6/dissertacao_djidenou_ufscar.pdf.txtdd00c17977d16c8f8f5db9acb9b8fee1MD56Carta-comprovante PIPGEs.pdf.txtCarta-comprovante PIPGEs.pdf.txtExtracted texttext/plain1324https://repositorio.ufscar.br/bitstream/ufscar/15526/8/Carta-comprovante%20PIPGEs.pdf.txt0b289610c896b0e8637fdb1654940247MD58THUMBNAILdissertacao_djidenou_ufscar.pdf.jpgdissertacao_djidenou_ufscar.pdf.jpgIM Thumbnailimage/jpeg15236https://repositorio.ufscar.br/bitstream/ufscar/15526/7/dissertacao_djidenou_ufscar.pdf.jpg8d75bcd93864e9e2779cce263d835316MD57Carta-comprovante PIPGEs.pdf.jpgCarta-comprovante PIPGEs.pdf.jpgIM Thumbnailimage/jpeg8406https://repositorio.ufscar.br/bitstream/ufscar/15526/9/Carta-comprovante%20PIPGEs.pdf.jpg8f92f949d7bf38c44a1ca30e552a943dMD59ufscar/155262023-09-18 18:32:23.862oai:repositorio.ufscar.br:ufscar/15526Repositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestopendoar:43222023-09-18T18:32:23Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.eng.fl_str_mv Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
dc.title.alternative.por.fl_str_mv Seleção Bayesiana de variáveis usando o algoritmo de saltos reversíveis direcionado pelos dados: uma aplicação a dados de esquizofrenia
title Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
spellingShingle Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
Montcho, Djidenou Hans Amos
Schizophrenia
Genetics
Informed reversible jump
Bayesian inference
Variable selection
MCMC
Esquizofrenia
Genética
Inferência Bayesiana
Seleção de variáveis
CIENCIAS EXATAS E DA TERRA::PROBABILIDADE E ESTATISTICA
title_short Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
title_full Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
title_fullStr Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
title_full_unstemmed Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
title_sort Bayesian variable selection using data driven reversible jump: an application to schizophrenia data
author Montcho, Djidenou Hans Amos
author_facet Montcho, Djidenou Hans Amos
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/3071157876961214
dc.contributor.author.fl_str_mv Montcho, Djidenou Hans Amos
dc.contributor.advisor1.fl_str_mv Milan, Luis Aparecido
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7435391829973844
dc.contributor.advisor-co1.fl_str_mv Zuanetti, Daiane Aparecida
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/8352484284929824
dc.contributor.authorID.fl_str_mv 816dcf41-18a4-43fc-9a9e-847a5980ddcf
contributor_str_mv Milan, Luis Aparecido
Zuanetti, Daiane Aparecida
dc.subject.eng.fl_str_mv Schizophrenia
Genetics
Informed reversible jump
Bayesian inference
Variable selection
topic Schizophrenia
Genetics
Informed reversible jump
Bayesian inference
Variable selection
MCMC
Esquizofrenia
Genética
Inferência Bayesiana
Seleção de variáveis
CIENCIAS EXATAS E DA TERRA::PROBABILIDADE E ESTATISTICA
dc.subject.por.fl_str_mv MCMC
Esquizofrenia
Genética
Inferência Bayesiana
Seleção de variáveis
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::PROBABILIDADE E ESTATISTICA
description Symptom based diagnosis are known to be limited specially concerning complex disorders such as schizophrenia. Modern attempts in providing predictive risk for such disease, to assist existing diagnosis tools, integrate genetic and brain information in what is known as imaging genetics. In this monography, our goal is both inferential and predictive. Regarding the inference, given the functional Magnetic Resonance Image and the Single Nucleotide Polymorphisms information of people diagnosed with schizophrenia and healthy people, we use a Bayesian probit model to select discriminating variables, while to estimate the predictive risk, the most promising models are combined using a Bayesian model averaging scheme. For these purposes, we propose an adaptive reversible jump markov chain monte carlo, named data driven reversible jump, for selecting the variables, estimating their effects and the predictive risk for future subjects.
publishDate 2021
dc.date.issued.fl_str_mv 2021-12-17
dc.date.accessioned.fl_str_mv 2022-02-01T11:25:20Z
dc.date.available.fl_str_mv 2022-02-01T11:25:20Z
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dc.identifier.citation.fl_str_mv MONTCHO, Djidenou Hans Amos. Bayesian variable selection using data driven reversible jump: an application to schizophrenia data. 2021. Dissertação (Mestrado em Estatística) – Universidade Federal de São Carlos, São Carlos, 2021. Disponível em: https://repositorio.ufscar.br/handle/ufscar/15526.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/15526
identifier_str_mv MONTCHO, Djidenou Hans Amos. Bayesian variable selection using data driven reversible jump: an application to schizophrenia data. 2021. Dissertação (Mestrado em Estatística) – Universidade Federal de São Carlos, São Carlos, 2021. Disponível em: https://repositorio.ufscar.br/handle/ufscar/15526.
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http://creativecommons.org/licenses/by-nc-nd/3.0/br/
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http://creativecommons.org/licenses/by-nc-nd/3.0/br/
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dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
dc.publisher.program.fl_str_mv Programa Interinstitucional de Pós-Graduação em Estatística - PIPGEs
dc.publisher.initials.fl_str_mv UFSCar
publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
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