DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)

Detalhes bibliográficos
Autor(a) principal: Santos, Cesar Augusto dos
Data de Publicação: 2018
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFSCAR
Texto Completo: https://repositorio.ufscar.br/handle/ufscar/10642
Resumo: Fish of the Schizodon genus have important representation in the largest South American basins. Historically they underwent through several taxonomic revisions, due to their high phenotypic plasticity and the ontogenetic characters found among the species of this group. The goal of this work was to evaluate the congruence between the molecular units (MOTUs) and the nominal species currently valid, using the DNA barcoding and coalescent methods. DNA extraction, amplification and analysis of the mitochondrial COI region from 68 samples were performed; additionally, 19 sequences available on the BOLD system were added to the analyses. The CodonCode Aligner program was used to edit the sequences and alignment. The genetic distances were calculated in the MEGA 7 software, using the K2P model (Kimura 2-Parameters). For the distance-based species delimitation, the DNA barcoding method was used with three different values of thresholds (2%, 1.4% and 1%). Although evidencing different numbers of MOTUs, the results were congruent in suggesting a possible synonymy of S. jacuiensis and S. platae. With the thresholds 1.4% and 1%, S. vittatus was subdivided into two MOTUs, evidencing the existence of a potential cryptic species. These results were corroborated in the GMYC (Generalized Mixed Yule-coalescent) species delimitation analysis. Thus, the findings of this work show that there are disagreements between the molecular units and the currently valid taxonomy for the genus. This indicates that an extensive taxonomic revision, using morphological and molecular tools, which include different genes, is still needed for a better decision on the taxonomic status within the Schizodon genus.
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spelling Santos, Cesar Augusto dosGaletti Júnior, Pedro Manoelhttp://lattes.cnpq.br/7398754661670478Ramirez Malaver, Jorge Luishttp://lattes.cnpq.br/3073682959497475http://lattes.cnpq.br/1501242713892003bf49df6e-7606-4bba-90fc-193f3b8ede9d2018-11-07T21:28:04Z2018-11-07T21:28:04Z2018-08-28SANTOS, Cesar Augusto dos. DNA Barconding do gênero Schizodon (Characiformes, Anostomidae). 2018. Dissertação (Mestrado em Genética Evolutiva e Biologia Molecular) – Universidade Federal de São Carlos, São Carlos, 2018. Disponível em: https://repositorio.ufscar.br/handle/ufscar/10642.https://repositorio.ufscar.br/handle/ufscar/10642Fish of the Schizodon genus have important representation in the largest South American basins. Historically they underwent through several taxonomic revisions, due to their high phenotypic plasticity and the ontogenetic characters found among the species of this group. The goal of this work was to evaluate the congruence between the molecular units (MOTUs) and the nominal species currently valid, using the DNA barcoding and coalescent methods. DNA extraction, amplification and analysis of the mitochondrial COI region from 68 samples were performed; additionally, 19 sequences available on the BOLD system were added to the analyses. The CodonCode Aligner program was used to edit the sequences and alignment. The genetic distances were calculated in the MEGA 7 software, using the K2P model (Kimura 2-Parameters). For the distance-based species delimitation, the DNA barcoding method was used with three different values of thresholds (2%, 1.4% and 1%). Although evidencing different numbers of MOTUs, the results were congruent in suggesting a possible synonymy of S. jacuiensis and S. platae. With the thresholds 1.4% and 1%, S. vittatus was subdivided into two MOTUs, evidencing the existence of a potential cryptic species. These results were corroborated in the GMYC (Generalized Mixed Yule-coalescent) species delimitation analysis. Thus, the findings of this work show that there are disagreements between the molecular units and the currently valid taxonomy for the genus. This indicates that an extensive taxonomic revision, using morphological and molecular tools, which include different genes, is still needed for a better decision on the taxonomic status within the Schizodon genus.Os peixes do gênero Schizodon possuem representação importante nas maiores bacias da América do Sul. Historicamente passaram por várias revisões taxonômicas, devido à alta plasticidade fenotípica e os caracteres ontogênicos encontrados entre as espécies desse grupo. O objetivo desse trabalho foi avaliar a congruência entre as unidades moleculares (MOTUs) e as denominações das espécies nominais de Schizodon reconhecidas como válidas na presente taxonomia, utilizando a ferramenta DNA barcoding. Foi realizada a extração do DNA e a amplificação e análise da região COI de 68 amostras; adicionalmente, 19 sequências disponíveis no BOLD system foram adicionadas à análise. Para edição das sequências e alinhamento fez-se uso do programa CodonCode Aligner. As distâncias genéticas foram calculadas no software MEGA 7, usando o modelo de substituição K2P (Kimura 2-Parâmetros). Para a delimitação de espécies baseada em distância, utilizou-se o método DNA barcoding com três valores diferentes de thresholds (2%, 1,4% e 1%). Embora evidenciando diferentes números de MOTUs, os resultados foram congruentes em sugerir uma possível sinonímia de S. jacuiensis e S. platae. Com os thresholds 1,4% e 1%, S. vittatus subdividiu-se em duas MOTUs, evidenciando a existência de uma espécie críptica dentro dessa denominação. Esses resultados foram corroborados na análise de delimitação de espécies do GMYC (Generalized Mixed Yule-coalescent). Assim, os achados desse trabalho mostram que há discordâncias e concordâncias entre as unidades moleculares e a taxonomia atualmente válida para o gênero, indicando a necessidade de uma revisão taxonômica extensa, utilizando ferramentas morfológicas e moleculares que incluam diferentes genes, para uma melhor decisão sobre o status taxonômico dentro do gênero Schizodon.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)CAPES: 001porUniversidade Federal de São CarlosCâmpus São CarlosPrograma de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEvUFSCarDNA barcodingPeixeDelimitação de espécieGMYCMOTUDNA barcodingFishSpecies delimitationCIENCIAS BIOLOGICAS::GENETICADNA Barconding do gênero Schizodon (Characiformes, Anostomidae)DNA Barcoding of gender Schizodon (Characiformes, Anostomidae)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisOnline60021591697-d537-499e-8a95-46132103682einfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINALDissertação de Mestrado DNA BARCODING DO GÊNERO SCHIZODON .pdfDissertação de Mestrado DNA BARCODING DO GÊNERO SCHIZODON .pdfapplication/pdf535882https://repositorio.ufscar.br/bitstream/ufscar/10642/4/Dissertac%cc%a7a%cc%83o%20de%20Mestrado%20DNA%20BARCODING%20DO%20G%c3%8aNERO%20SCHIZODON%20.pdf1d405e729e9a0fd67f53978482c15f9aMD54LICENSElicense.txtlicense.txttext/plain; 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dc.title.por.fl_str_mv DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
dc.title.alternative.eng.fl_str_mv DNA Barcoding of gender Schizodon (Characiformes, Anostomidae)
title DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
spellingShingle DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
Santos, Cesar Augusto dos
DNA barcoding
Peixe
Delimitação de espécie
GMYC
MOTU
DNA barcoding
Fish
Species delimitation
CIENCIAS BIOLOGICAS::GENETICA
title_short DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
title_full DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
title_fullStr DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
title_full_unstemmed DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
title_sort DNA Barconding do gênero Schizodon (Characiformes, Anostomidae)
author Santos, Cesar Augusto dos
author_facet Santos, Cesar Augusto dos
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/1501242713892003
dc.contributor.author.fl_str_mv Santos, Cesar Augusto dos
dc.contributor.advisor1.fl_str_mv Galetti Júnior, Pedro Manoel
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7398754661670478
dc.contributor.advisor-co1.fl_str_mv Ramirez Malaver, Jorge Luis
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/3073682959497475
dc.contributor.authorID.fl_str_mv bf49df6e-7606-4bba-90fc-193f3b8ede9d
contributor_str_mv Galetti Júnior, Pedro Manoel
Ramirez Malaver, Jorge Luis
dc.subject.por.fl_str_mv DNA barcoding
Peixe
Delimitação de espécie
GMYC
MOTU
topic DNA barcoding
Peixe
Delimitação de espécie
GMYC
MOTU
DNA barcoding
Fish
Species delimitation
CIENCIAS BIOLOGICAS::GENETICA
dc.subject.eng.fl_str_mv DNA barcoding
Fish
Species delimitation
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::GENETICA
description Fish of the Schizodon genus have important representation in the largest South American basins. Historically they underwent through several taxonomic revisions, due to their high phenotypic plasticity and the ontogenetic characters found among the species of this group. The goal of this work was to evaluate the congruence between the molecular units (MOTUs) and the nominal species currently valid, using the DNA barcoding and coalescent methods. DNA extraction, amplification and analysis of the mitochondrial COI region from 68 samples were performed; additionally, 19 sequences available on the BOLD system were added to the analyses. The CodonCode Aligner program was used to edit the sequences and alignment. The genetic distances were calculated in the MEGA 7 software, using the K2P model (Kimura 2-Parameters). For the distance-based species delimitation, the DNA barcoding method was used with three different values of thresholds (2%, 1.4% and 1%). Although evidencing different numbers of MOTUs, the results were congruent in suggesting a possible synonymy of S. jacuiensis and S. platae. With the thresholds 1.4% and 1%, S. vittatus was subdivided into two MOTUs, evidencing the existence of a potential cryptic species. These results were corroborated in the GMYC (Generalized Mixed Yule-coalescent) species delimitation analysis. Thus, the findings of this work show that there are disagreements between the molecular units and the currently valid taxonomy for the genus. This indicates that an extensive taxonomic revision, using morphological and molecular tools, which include different genes, is still needed for a better decision on the taxonomic status within the Schizodon genus.
publishDate 2018
dc.date.accessioned.fl_str_mv 2018-11-07T21:28:04Z
dc.date.available.fl_str_mv 2018-11-07T21:28:04Z
dc.date.issued.fl_str_mv 2018-08-28
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv SANTOS, Cesar Augusto dos. DNA Barconding do gênero Schizodon (Characiformes, Anostomidae). 2018. Dissertação (Mestrado em Genética Evolutiva e Biologia Molecular) – Universidade Federal de São Carlos, São Carlos, 2018. Disponível em: https://repositorio.ufscar.br/handle/ufscar/10642.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/ufscar/10642
identifier_str_mv SANTOS, Cesar Augusto dos. DNA Barconding do gênero Schizodon (Characiformes, Anostomidae). 2018. Dissertação (Mestrado em Genética Evolutiva e Biologia Molecular) – Universidade Federal de São Carlos, São Carlos, 2018. Disponível em: https://repositorio.ufscar.br/handle/ufscar/10642.
url https://repositorio.ufscar.br/handle/ufscar/10642
dc.language.iso.fl_str_mv por
language por
dc.relation.confidence.fl_str_mv 600
dc.relation.authority.fl_str_mv 21591697-d537-499e-8a95-46132103682e
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Genética Evolutiva e Biologia Molecular - PPGGEv
dc.publisher.initials.fl_str_mv UFSCar
publisher.none.fl_str_mv Universidade Federal de São Carlos
Câmpus São Carlos
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFSCAR
instname:Universidade Federal de São Carlos (UFSCAR)
instacron:UFSCAR
instname_str Universidade Federal de São Carlos (UFSCAR)
instacron_str UFSCAR
institution UFSCAR
reponame_str Repositório Institucional da UFSCAR
collection Repositório Institucional da UFSCAR
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