A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
Autor(a) principal: | |
---|---|
Data de Publicação: | 2005 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UCB |
Texto Completo: | http://twingo.ucb.br:8080/jspui/handle/10869/648 https://repositorio.ucb.br:9443/jspui/handle/123456789/7829 |
Resumo: | Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis. |
id |
UCB-2_14d2ce113cfa93f58f43c63118a7f642 |
---|---|
oai_identifier_str |
oai:200.214.135.189:123456789/7829 |
network_acronym_str |
UCB-2 |
network_name_str |
Repositório Institucional da UCB |
spelling |
Moretzsohn, Márcio de CarvalhoLeoi, Lélia Cristina TenórioProite, KarinaGuimarães, Patrícia MessenbergBertioli, Soraya Cristina de Macedo LealGimenes, Marcos AparecidoMartins, Wellington SantosValls, José Francisco MontenegroGrattapaglia, DárioBertioli, David John2016-10-10T03:52:48Z2016-10-10T03:52:48Z2005MORETZSOHN, Márcio C. et al. A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theoretical and Applied Genetics, v. 111, n. 6, p. 1060-1071, 2005.http://twingo.ucb.br:8080/jspui/handle/10869/648https://repositorio.ucb.br:9443/jspui/handle/123456789/7829Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis.Made available in DSpace on 2016-10-10T03:52:48Z (GMT). No. of bitstreams: 5 A microsatellite_based gene-rich linkage map for the AA genome of Arachis _Fabaceae.pdf: 425331 bytes, checksum: 55e6c801bc35d32c33086c83cae95842 (MD5) license_url: 52 bytes, checksum: 3d480ae6c91e310daba2020f8787d6f9 (MD5) license_text: 23851 bytes, checksum: 294cb7010cc40c47642971e073de3dba (MD5) license_rdf: 23892 bytes, checksum: afd5dad10b1d1e6dc10c8c5d25222c7a (MD5) license.txt: 1887 bytes, checksum: 445d1980f282ec865917de35a4c622f6 (MD5) Previous issue date: 2005PublicadoTextoA microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleTheoretical and Applied Geneticsinfo:eu-repo/semantics/openAccessengreponame:Repositório Institucional da UCBinstname:Universidade Católica de Brasília (UCB)instacron:UCBORIGINALA microsatellite_based gene-rich linkage map for the AA genome of Arachis _Fabaceae.pdfapplication/pdf425331https://200.214.135.178:9443/jspui/bitstream/123456789/7829/1/A%20microsatellite_based%20gene-rich%20linkage%20map%20for%20the%20AA%20genome%20of%20Arachis%20_Fabaceae.pdf55e6c801bc35d32c33086c83cae95842MD51CC-LICENSElicense_urlapplication/octet-stream52https://200.214.135.178:9443/jspui/bitstream/123456789/7829/2/license_url3d480ae6c91e310daba2020f8787d6f9MD52license_textapplication/octet-stream23851https://200.214.135.178:9443/jspui/bitstream/123456789/7829/3/license_text294cb7010cc40c47642971e073de3dbaMD53license_rdfapplication/octet-stream23892https://200.214.135.178:9443/jspui/bitstream/123456789/7829/4/license_rdfafd5dad10b1d1e6dc10c8c5d25222c7aMD54LICENSElicense.txttext/plain1887https://200.214.135.178:9443/jspui/bitstream/123456789/7829/5/license.txt445d1980f282ec865917de35a4c622f6MD55TEXTA microsatellite_based gene-rich linkage map for the AA genome of Arachis _Fabaceae.pdf.txtA microsatellite_based gene-rich linkage map for the AA genome of Arachis _Fabaceae.pdf.txtExtracted texttext/plain60680https://200.214.135.178:9443/jspui/bitstream/123456789/7829/6/A%20microsatellite_based%20gene-rich%20linkage%20map%20for%20the%20AA%20genome%20of%20Arachis%20_Fabaceae.pdf.txt206745ca072392987cca7cc9dd50444fMD56123456789/78292017-01-17 15:11:17.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ório de Publicaçõeshttps://repositorio.ucb.br:9443/jspui/ |
dc.title.pt_BR.fl_str_mv |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
title |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
spellingShingle |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) Moretzsohn, Márcio de Carvalho |
title_short |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
title_full |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
title_fullStr |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
title_full_unstemmed |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
title_sort |
A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae) |
author |
Moretzsohn, Márcio de Carvalho |
author_facet |
Moretzsohn, Márcio de Carvalho Leoi, Lélia Cristina Tenório Proite, Karina Guimarães, Patrícia Messenberg Bertioli, Soraya Cristina de Macedo Leal Gimenes, Marcos Aparecido Martins, Wellington Santos Valls, José Francisco Montenegro Grattapaglia, Dário Bertioli, David John |
author_role |
author |
author2 |
Leoi, Lélia Cristina Tenório Proite, Karina Guimarães, Patrícia Messenberg Bertioli, Soraya Cristina de Macedo Leal Gimenes, Marcos Aparecido Martins, Wellington Santos Valls, José Francisco Montenegro Grattapaglia, Dário Bertioli, David John |
author2_role |
author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Moretzsohn, Márcio de Carvalho Leoi, Lélia Cristina Tenório Proite, Karina Guimarães, Patrícia Messenberg Bertioli, Soraya Cristina de Macedo Leal Gimenes, Marcos Aparecido Martins, Wellington Santos Valls, José Francisco Montenegro Grattapaglia, Dário Bertioli, David John |
dc.description.abstract.por.fl_txt_mv |
Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis. |
dc.description.status.pt_BR.fl_txt_mv |
Publicado |
description |
Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis. |
publishDate |
2005 |
dc.date.issued.fl_str_mv |
2005 |
dc.date.accessioned.fl_str_mv |
2016-10-10T03:52:48Z |
dc.date.available.fl_str_mv |
2016-10-10T03:52:48Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
status_str |
publishedVersion |
format |
article |
dc.identifier.citation.fl_str_mv |
MORETZSOHN, Márcio C. et al. A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theoretical and Applied Genetics, v. 111, n. 6, p. 1060-1071, 2005. |
dc.identifier.uri.fl_str_mv |
http://twingo.ucb.br:8080/jspui/handle/10869/648 https://repositorio.ucb.br:9443/jspui/handle/123456789/7829 |
identifier_str_mv |
MORETZSOHN, Márcio C. et al. A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theoretical and Applied Genetics, v. 111, n. 6, p. 1060-1071, 2005. |
url |
http://twingo.ucb.br:8080/jspui/handle/10869/648 https://repositorio.ucb.br:9443/jspui/handle/123456789/7829 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
Texto |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UCB instname:Universidade Católica de Brasília (UCB) instacron:UCB |
instname_str |
Universidade Católica de Brasília (UCB) |
instacron_str |
UCB |
institution |
UCB |
reponame_str |
Repositório Institucional da UCB |
collection |
Repositório Institucional da UCB |
bitstream.url.fl_str_mv |
https://200.214.135.178:9443/jspui/bitstream/123456789/7829/1/A%20microsatellite_based%20gene-rich%20linkage%20map%20for%20the%20AA%20genome%20of%20Arachis%20_Fabaceae.pdf https://200.214.135.178:9443/jspui/bitstream/123456789/7829/2/license_url https://200.214.135.178:9443/jspui/bitstream/123456789/7829/3/license_text https://200.214.135.178:9443/jspui/bitstream/123456789/7829/4/license_rdf https://200.214.135.178:9443/jspui/bitstream/123456789/7829/5/license.txt https://200.214.135.178:9443/jspui/bitstream/123456789/7829/6/A%20microsatellite_based%20gene-rich%20linkage%20map%20for%20the%20AA%20genome%20of%20Arachis%20_Fabaceae.pdf.txt |
bitstream.checksum.fl_str_mv |
55e6c801bc35d32c33086c83cae95842 3d480ae6c91e310daba2020f8787d6f9 294cb7010cc40c47642971e073de3dba afd5dad10b1d1e6dc10c8c5d25222c7a 445d1980f282ec865917de35a4c622f6 206745ca072392987cca7cc9dd50444f |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
|
repository.mail.fl_str_mv |
|
_version_ |
1724829831913275392 |