A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)

Detalhes bibliográficos
Autor(a) principal: Moretzsohn, Márcio de Carvalho
Data de Publicação: 2005
Outros Autores: Leoi, Lélia Cristina Tenório, Proite, Karina, Guimarães, Patrícia Messenberg, Bertioli, Soraya Cristina de Macedo Leal, Gimenes, Marcos Aparecido, Martins, Wellington Santos, Valls, José Francisco Montenegro, Grattapaglia, Dário, Bertioli, David John
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UCB
Texto Completo: http://twingo.ucb.br:8080/jspui/handle/10869/648
https://repositorio.ucb.br:9443/jspui/handle/123456789/7829
Resumo: Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis.
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spelling Moretzsohn, Márcio de CarvalhoLeoi, Lélia Cristina TenórioProite, KarinaGuimarães, Patrícia MessenbergBertioli, Soraya Cristina de Macedo LealGimenes, Marcos AparecidoMartins, Wellington SantosValls, José Francisco MontenegroGrattapaglia, DárioBertioli, David John2016-10-10T03:52:48Z2016-10-10T03:52:48Z2005MORETZSOHN, Márcio C. et al. A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theoretical and Applied Genetics, v. 111, n. 6, p. 1060-1071, 2005.http://twingo.ucb.br:8080/jspui/handle/10869/648https://repositorio.ucb.br:9443/jspui/handle/123456789/7829Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis.Made available in DSpace on 2016-10-10T03:52:48Z (GMT). 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dc.title.pt_BR.fl_str_mv A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
title A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
spellingShingle A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
Moretzsohn, Márcio de Carvalho
title_short A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
title_full A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
title_fullStr A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
title_full_unstemmed A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
title_sort A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
author Moretzsohn, Márcio de Carvalho
author_facet Moretzsohn, Márcio de Carvalho
Leoi, Lélia Cristina Tenório
Proite, Karina
Guimarães, Patrícia Messenberg
Bertioli, Soraya Cristina de Macedo Leal
Gimenes, Marcos Aparecido
Martins, Wellington Santos
Valls, José Francisco Montenegro
Grattapaglia, Dário
Bertioli, David John
author_role author
author2 Leoi, Lélia Cristina Tenório
Proite, Karina
Guimarães, Patrícia Messenberg
Bertioli, Soraya Cristina de Macedo Leal
Gimenes, Marcos Aparecido
Martins, Wellington Santos
Valls, José Francisco Montenegro
Grattapaglia, Dário
Bertioli, David John
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Moretzsohn, Márcio de Carvalho
Leoi, Lélia Cristina Tenório
Proite, Karina
Guimarães, Patrícia Messenberg
Bertioli, Soraya Cristina de Macedo Leal
Gimenes, Marcos Aparecido
Martins, Wellington Santos
Valls, José Francisco Montenegro
Grattapaglia, Dário
Bertioli, David John
dc.description.abstract.por.fl_txt_mv Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis.
dc.description.status.pt_BR.fl_txt_mv Publicado
description Cultivated peanut (Arachis hypogaea) is an important crop, widely grown in tropical and subtropical regions of the world. It is highly susceptible to several biotic and abiotic stresses to which wild species are resistant. As a first step towards the introgression of these resistance genes into cultivated peanut, a linkage map based on microsatellite markers was constructed, using an F2 population obtained from a cross between two diploid wild species with AA genome (A. duranensis and A. stenosperma). A total of 271 new microsatellite markers were developed in the present study from SSRenriched genomic libraries, expressed sequence tags (ESTs), and by ‘‘data-mining’’ sequences available in GenBank. Of these, 66 were polymorphic for cultivated peanut. The 271 new markers plus another 162 published for peanut were screened against both progenitors and 204 of these (47.1%) were polymorphic, with 170 codominant and 34 dominant markers. The 80 codominant markers segregating 1:2:1 (P<0.05) were initially used to establish the linkage groups. Distorted and dominant markers were subsequently included in the map. The resulting linkage map consists of 11 linkage groups covering 1,230.89 cM of total map distance, with an average distance of 7.24 cM between markers. This is the first microsatellite-based map published for Arachis, and the first map based on sequences that are all currently publicly available. Because most markers used were derived from ESTs and genomic libraries made using methylation-sensitive restriction enzymes, about one-third of the mapped markers are genic. Linkage group ordering is being validated in other mapping populations, with the aim of constructing a transferable reference map for Arachis.
publishDate 2005
dc.date.issued.fl_str_mv 2005
dc.date.accessioned.fl_str_mv 2016-10-10T03:52:48Z
dc.date.available.fl_str_mv 2016-10-10T03:52:48Z
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dc.identifier.citation.fl_str_mv MORETZSOHN, Márcio C. et al. A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theoretical and Applied Genetics, v. 111, n. 6, p. 1060-1071, 2005.
dc.identifier.uri.fl_str_mv http://twingo.ucb.br:8080/jspui/handle/10869/648
https://repositorio.ucb.br:9443/jspui/handle/123456789/7829
identifier_str_mv MORETZSOHN, Márcio C. et al. A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theoretical and Applied Genetics, v. 111, n. 6, p. 1060-1071, 2005.
url http://twingo.ucb.br:8080/jspui/handle/10869/648
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