Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos

Detalhes bibliográficos
Autor(a) principal: Rodrigues, Marciene Amorim
Data de Publicação: 2015
Tipo de documento: Tese
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UEFS
Texto Completo: http://localhost:8080/tede/handle/tede/236
Resumo: The finger drop of banana is closely related to the maturation process and involves the softening and weakening of the pedicel. The aim of this study was to evaluate the genetic diversity of banana genotypes with contrasting levels of fruit finger drop by means of molecular markers and evaluate the susceptibility and resistance to finger drop from anatomical studies and analysis of gene expression via real-time quantitative PCR.The genotyping data generated by microsatellites was carried out based on the number of base pairs of each fragment and dendrogram cluster calculated by UPGMA method. Of the 30 microsatellite primer evaluated, 139 alleles were obtained, with the average of 4.66 alleles per locus. No relationship was found between the polymorphism detected by microsatellite markers and the degree of finger drop fruit. For the anatomical characterization, genotypes in the maturation stages 4, 5 and 6, and from different ploidy levels and finger drop resistance patterns, were used. In genotype 017041-01, susceptible, the presence of air parenchyma, was observed, a feature which was not evidenced in the resistant genotypes genotypes BB France, Khai Nai and BRS On Preciosa. Higher values of variable AF and increased deposition of lignin in the vascular bundles, were related to finger drop resistance. The values of Ct (cycle threshold) were used to determine the gene expression difference on cell wall modifier genes (PEL1, EXP1 and XTH4) between different stages of maturation in the finger drop zone (ZD) and in the middle of the fruit (control zone-ZC). To perform the analysis of relative expression, the 2− ΔΔ CT method, was used. RT-qPCR analysis showed that there was a differential expression between the stages of maturation. Ploidy levels and resistance patterns, did not show correlation with the results of the expression. Genes XTH4 and PEL1 showed expression profiles related to finger drop in fruits in different genotypes being good candidates for functional studies in bananas, and may be useful in strategies of genetic improvement aiming the production of banana fruits with resistance to finger drop.
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spelling Santana, José Raniere Ferreira de04405135452http://lattes.cnpq.br/6547881854777229Rodrigues, Marciene Amorim2015-10-15T01:03:28Z2015-08-31RODRIGUES, Marciene Amorim. Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos. 2015. 71 f. Tese (Doutorado Acadêmico em Recursos Genéticos Vegetais)- Universidade Estadual de Feira de Santana, Feira de Santana, 2015.http://localhost:8080/tede/handle/tede/236The finger drop of banana is closely related to the maturation process and involves the softening and weakening of the pedicel. The aim of this study was to evaluate the genetic diversity of banana genotypes with contrasting levels of fruit finger drop by means of molecular markers and evaluate the susceptibility and resistance to finger drop from anatomical studies and analysis of gene expression via real-time quantitative PCR.The genotyping data generated by microsatellites was carried out based on the number of base pairs of each fragment and dendrogram cluster calculated by UPGMA method. Of the 30 microsatellite primer evaluated, 139 alleles were obtained, with the average of 4.66 alleles per locus. No relationship was found between the polymorphism detected by microsatellite markers and the degree of finger drop fruit. For the anatomical characterization, genotypes in the maturation stages 4, 5 and 6, and from different ploidy levels and finger drop resistance patterns, were used. In genotype 017041-01, susceptible, the presence of air parenchyma, was observed, a feature which was not evidenced in the resistant genotypes genotypes BB France, Khai Nai and BRS On Preciosa. Higher values of variable AF and increased deposition of lignin in the vascular bundles, were related to finger drop resistance. The values of Ct (cycle threshold) were used to determine the gene expression difference on cell wall modifier genes (PEL1, EXP1 and XTH4) between different stages of maturation in the finger drop zone (ZD) and in the middle of the fruit (control zone-ZC). To perform the analysis of relative expression, the 2− ΔΔ CT method, was used. RT-qPCR analysis showed that there was a differential expression between the stages of maturation. Ploidy levels and resistance patterns, did not show correlation with the results of the expression. Genes XTH4 and PEL1 showed expression profiles related to finger drop in fruits in different genotypes being good candidates for functional studies in bananas, and may be useful in strategies of genetic improvement aiming the production of banana fruits with resistance to finger drop.O despencamento natural dos frutos da bananeira está estreitamente relacionado com o processo de maturação e envolve o amolecimento e enfraquecimento do pedicelo. O objetivo deste trabalho foi estudar a diversidade genética de genótipos de bananeira com níveis contrastantes ao despencamento dos frutos por meio de marcadores moleculares e avaliar a suscetibilidade e resistência ao despencamento a partir de estudos anatômicos e análise de expressão gênica via PCR quantitativo em tempo real. A genotipagem dos dados gerados pelos microssatélites foi realizada com base no número de pares de base de cada fragmento e para o agrupamento no dendrograma, utilizou-se o método UPGMA. Dos 30 iniciadores microssatélites avaliados, obteve-se 139 alelos, com média de 4,66 alelos por loco. Não foi observada relação entre o polimorfismo detectado pelos marcadores microssatélites e o grau de despencamento dos frutos Para a caracterização anatômica, foram utilizados genótipos nos estádios de maturação 4, 5 e 6, de diferentes ploidias e padrões de resistência ao despencamento. No genótipo suscetível 017041-01 foi observada presença marcante de parênquima aerífero, característica que não foi evidenciada nos genótipos resistentes BB França, Khai Nai On e BRS Preciosa. As mudanças anatômicas, observadas durante o amadurecimento nos estádios de maturação, foram mais evidentes no genótipo suscetível 017041-01. Maiores valores da variável AF e maior deposição de lignina nos feixes vasculares mostraram-se relacionados à resistência ao despencamento. Os valores dos Ct (cycle threshold) foram utilizados para determinar a diferença da expressão gênica relativa dos genes modificadores da parede celular (PEL1, EXP1 e XTH4) entre diferentes estádios de maturação na zona de despencamento (ZD) e na região mediana da casca (zona controle - ZC). Para realizar a análise de expressão relativa, foi utilizado o método 2− ΔΔ CT. Os resultados finais da análise por RT-qPCR mostraram que houve uma expressão diferencial entre os estádios de maturação nos genótipos estudados. Os genes PEL1 e XTH4 demonstraram perfis de expressão relacionados com o despencamento dos frutos em diferentes genótipos sendo bons candidatos para estudos funcionais em bananeira, podendo ser utilizado para direcionar o programa de melhoramento da cultura visando à produção de frutos com resistência para essa característica.Submitted by Ricardo Cedraz Duque Moliterno (ricardo.moliterno@uefs.br) on 2015-10-15T01:03:28Z No. of bitstreams: 1 tese_MarcieneAmorimRodrigues.pdf: 2638970 bytes, checksum: d5ff79afee71b478fcb964476ba3b346 (MD5)Made available in DSpace on 2015-10-15T01:03:28Z (GMT). No. of bitstreams: 1 tese_MarcieneAmorimRodrigues.pdf: 2638970 bytes, checksum: d5ff79afee71b478fcb964476ba3b346 (MD5) Previous issue date: 2015-08-31Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESapplication/pdfporUniversidade Estadual de Feira de SantanaDoutorado Acadêmico em Recursos Genéticos VegetaisUEFSBrasilDEPARTAMENTO DE CIÊNCIAS BIOLÓGICASMusa sppPediceloISSRsMicrossatélitesRT-qPCRPedicelMusa sppISSRsMicrossatelitesRT-qPCRCIENCIAS BIOLOGICAS::BIOLOGIA GERALEstudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutosinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis2074743607827725103600600600600-6971480722008537872-16345593859312446972075167498588264571info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UEFSinstname:Universidade Estadual de Feira de Santana (UEFS)instacron:UEFSORIGINALtese_MarcieneAmorimRodrigues.pdftese_MarcieneAmorimRodrigues.pdfapplication/pdf2638970http://tede2.uefs.br:8080/bitstream/tede/236/2/tese_MarcieneAmorimRodrigues.pdfd5ff79afee71b478fcb964476ba3b346MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://tede2.uefs.br:8080/bitstream/tede/236/1/license.txtbd3efa91386c1718a7f26a329fdcb468MD51tede/2362015-10-14 22:24:59.745oai:tede2.uefs.br:8080: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Biblioteca Digital de Teses e Dissertaçõeshttp://tede2.uefs.br:8080/PUBhttp://tede2.uefs.br:8080/oai/requestbcuefs@uefs.br|| bcref@uefs.br||bcuefs@uefs.bropendoar:2015-10-15T01:24:59Biblioteca Digital de Teses e Dissertações da UEFS - Universidade Estadual de Feira de Santana (UEFS)false
dc.title.por.fl_str_mv Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
title Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
spellingShingle Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
Rodrigues, Marciene Amorim
Musa spp
Pedicelo
ISSRs
Microssatélites
RT-qPCR
Pedicel
Musa spp
ISSRs
Microssatelites
RT-qPCR
CIENCIAS BIOLOGICAS::BIOLOGIA GERAL
title_short Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
title_full Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
title_fullStr Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
title_full_unstemmed Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
title_sort Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos
author Rodrigues, Marciene Amorim
author_facet Rodrigues, Marciene Amorim
author_role author
dc.contributor.advisor1.fl_str_mv Santana, José Raniere Ferreira de
dc.contributor.authorID.fl_str_mv 04405135452
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/6547881854777229
dc.contributor.author.fl_str_mv Rodrigues, Marciene Amorim
contributor_str_mv Santana, José Raniere Ferreira de
dc.subject.por.fl_str_mv Musa spp
Pedicelo
ISSRs
Microssatélites
RT-qPCR
topic Musa spp
Pedicelo
ISSRs
Microssatélites
RT-qPCR
Pedicel
Musa spp
ISSRs
Microssatelites
RT-qPCR
CIENCIAS BIOLOGICAS::BIOLOGIA GERAL
dc.subject.eng.fl_str_mv Pedicel
Musa spp
ISSRs
Microssatelites
RT-qPCR
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::BIOLOGIA GERAL
description The finger drop of banana is closely related to the maturation process and involves the softening and weakening of the pedicel. The aim of this study was to evaluate the genetic diversity of banana genotypes with contrasting levels of fruit finger drop by means of molecular markers and evaluate the susceptibility and resistance to finger drop from anatomical studies and analysis of gene expression via real-time quantitative PCR.The genotyping data generated by microsatellites was carried out based on the number of base pairs of each fragment and dendrogram cluster calculated by UPGMA method. Of the 30 microsatellite primer evaluated, 139 alleles were obtained, with the average of 4.66 alleles per locus. No relationship was found between the polymorphism detected by microsatellite markers and the degree of finger drop fruit. For the anatomical characterization, genotypes in the maturation stages 4, 5 and 6, and from different ploidy levels and finger drop resistance patterns, were used. In genotype 017041-01, susceptible, the presence of air parenchyma, was observed, a feature which was not evidenced in the resistant genotypes genotypes BB France, Khai Nai and BRS On Preciosa. Higher values of variable AF and increased deposition of lignin in the vascular bundles, were related to finger drop resistance. The values of Ct (cycle threshold) were used to determine the gene expression difference on cell wall modifier genes (PEL1, EXP1 and XTH4) between different stages of maturation in the finger drop zone (ZD) and in the middle of the fruit (control zone-ZC). To perform the analysis of relative expression, the 2− ΔΔ CT method, was used. RT-qPCR analysis showed that there was a differential expression between the stages of maturation. Ploidy levels and resistance patterns, did not show correlation with the results of the expression. Genes XTH4 and PEL1 showed expression profiles related to finger drop in fruits in different genotypes being good candidates for functional studies in bananas, and may be useful in strategies of genetic improvement aiming the production of banana fruits with resistance to finger drop.
publishDate 2015
dc.date.accessioned.fl_str_mv 2015-10-15T01:03:28Z
dc.date.issued.fl_str_mv 2015-08-31
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.citation.fl_str_mv RODRIGUES, Marciene Amorim. Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos. 2015. 71 f. Tese (Doutorado Acadêmico em Recursos Genéticos Vegetais)- Universidade Estadual de Feira de Santana, Feira de Santana, 2015.
dc.identifier.uri.fl_str_mv http://localhost:8080/tede/handle/tede/236
identifier_str_mv RODRIGUES, Marciene Amorim. Estudos moleculares, anatômicos e expressão gênica de genótipos de bananeira contrastantes quanto ao despencamento dos frutos. 2015. 71 f. Tese (Doutorado Acadêmico em Recursos Genéticos Vegetais)- Universidade Estadual de Feira de Santana, Feira de Santana, 2015.
url http://localhost:8080/tede/handle/tede/236
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