Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals

Detalhes bibliográficos
Autor(a) principal: Mainardi, Raffaella Menegheti
Data de Publicação: 2021
Outros Autores: Costa, Arthur Roberto da, Chideroli, Roberta Torres, Favero, Leonardo Mantovani, Alfieri, Amauri Alcindo, Pereira, Ulisses de Pádua
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Semina. Ciências Agrárias (Online)
Texto Completo: https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/40548
Resumo: Neonatal diarrhea is the main cause of early mortality and morbidity in farm animals and the source of huge, direct and indirect, economic husbandry losses. Escherichia coli, a common harmless commensal bacterium, can turn into a main diarrheal pathogen through antibiotic resistance and the expression of genetically acquired virulence factors. In this study, fecal samples obtained from eight farms of animals with clinical signs characteristic of diarrhea were subjected to culture and bacterial isolation. Colonies suggestive of E. coli were identified through morphological and biochemical characteristics. Susceptibility tests to the main veterinary antibacterial agents were conducted using agar disk diffusion followed by phenotypical detection of extended-spectrum ?-lactamase (ESBL). A total of 301 colonies were characterized as E. coli and, out of the 192 that were tested, 134 showed resistance to three or more classes of antimicrobial drugs and were classified as multidrug resistant (MDR), and 14 were ESBL positive. Bacterial DNA was extracted for multiplex PCR (mPCR) using primers to detect ten different genes of diarrheagenic E. coli (DEC). Thirty-six bacterial strains were positive in the mPCR assay, 28 of which were classified as enterotoxigenic E. coli (ETEC) and eight as enteropathogenic E. coli (EPEC). The high prevalence of MDR strains and the detection of ESBL denote the presence of resistance genes in animal husbandry; thus, it is important to isolate and characterize those pathogens and test antimicrobial sensitivity in vitro to avoid ineffective treatments and the spread of antimicrobial resistance, which are the major concerns of Public Health and One Health.
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spelling Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animalsPerfil de resistência e caracterização de virulência de Escherichia coli isoladas de animais de produção neonatos com diarreiaESBLE.coliFarm animalsMultidrug resistant bacteriamPCRNeonatal diarrhea.ESBLE. coliAnimais de produçãoBactérias multirresistentesmPCRDiarreia neonatal.Neonatal diarrhea is the main cause of early mortality and morbidity in farm animals and the source of huge, direct and indirect, economic husbandry losses. Escherichia coli, a common harmless commensal bacterium, can turn into a main diarrheal pathogen through antibiotic resistance and the expression of genetically acquired virulence factors. In this study, fecal samples obtained from eight farms of animals with clinical signs characteristic of diarrhea were subjected to culture and bacterial isolation. Colonies suggestive of E. coli were identified through morphological and biochemical characteristics. Susceptibility tests to the main veterinary antibacterial agents were conducted using agar disk diffusion followed by phenotypical detection of extended-spectrum ?-lactamase (ESBL). A total of 301 colonies were characterized as E. coli and, out of the 192 that were tested, 134 showed resistance to three or more classes of antimicrobial drugs and were classified as multidrug resistant (MDR), and 14 were ESBL positive. Bacterial DNA was extracted for multiplex PCR (mPCR) using primers to detect ten different genes of diarrheagenic E. coli (DEC). Thirty-six bacterial strains were positive in the mPCR assay, 28 of which were classified as enterotoxigenic E. coli (ETEC) and eight as enteropathogenic E. coli (EPEC). The high prevalence of MDR strains and the detection of ESBL denote the presence of resistance genes in animal husbandry; thus, it is important to isolate and characterize those pathogens and test antimicrobial sensitivity in vitro to avoid ineffective treatments and the spread of antimicrobial resistance, which are the major concerns of Public Health and One Health.Diarreias neonatais são as principais responsáveis por uma precoce mortalidade e morbidade em animais de criação, causando grandes perdas econômicas, direta e indiretamente, a qualquer fazenda de produção. Escherichia coli, normalmente uma bactéria comensal inofensiva, podem ser um dos principais patógenos diarreicos a partir da resistência a antimicrobianos e da expressão de fatores de virulência geneticamente adquiridos. Neste estudo, amostras de fezes obtidas de oito fazendas, de animais apresentando quadro diarreico, foram submetidas à cultura e isolamento bacteriano, e, as colônias sugestivas de E. coli foram identificadas através de características morfológicas e bioquímicas. Os testes de suscetibilidade aos principais agentes antibacterianos veterinários foram realizados por disco difusão em ágar seguida pela detecção fenotípica de ?-lactamase de espectro estendido (ESBL). Foram isoladas 301 colônias caracterizadas como E. coli e, de 192 testadas, 134 apresentaram resistência a três ou mais classes de antimicrobianos e 14 foram positivas para ESBL. O DNA bacteriano foi extraído para avaliação multiplex de PCR (mPCR) utilizando primers para detectar dez diferentes genes de E. coli diarreiogênicas. Trinta e seis bactérias atestaram positivas na mPCR, com 28 delas classificadas como E. coli enterotoxigênicas (ETEC) e oito E. coli enteropatogênicas (EPEC). A prevalência de cepas multirresistentes e a detecção de ESBL alertam para a presença de genes de resistência na criação animal, assim, é importante o isolamento e a caracterização desses patógenos, principalmente o teste da sensibilidade antimicrobiana in vitro, para evitar tratamentos ineficazes e a disseminação da resistência antimicrobiana que é uma das principais preocupações dentro da Saúde Pública e Saúde Única.UEL2021-02-24info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionbacterial isolation, antibiotic resistancecultura bacteriana, resistência a antibióticoapplication/pdfhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/4054810.5433/1679-0359.2021v42n2p735Semina: Ciências Agrárias; Vol. 42 No. 2 (2021); 735-746Semina: Ciências Agrárias; v. 42 n. 2 (2021); 735-7461679-03591676-546Xreponame:Semina. Ciências Agrárias (Online)instname:Universidade Estadual de Londrina (UEL)instacron:UELenghttps://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/40548/29077Copyright (c) 2021 Semina: Ciências Agráriashttp://creativecommons.org/licenses/by-nc/4.0info:eu-repo/semantics/openAccessMainardi, Raffaella MeneghetiCosta, Arthur Roberto daChideroli, Roberta TorresFavero, Leonardo MantovaniAlfieri, Amauri AlcindoPereira, Ulisses de Pádua2022-10-04T14:08:24Zoai:ojs.pkp.sfu.ca:article/40548Revistahttp://www.uel.br/revistas/uel/index.php/semagrariasPUBhttps://ojs.uel.br/revistas/uel/index.php/semagrarias/oaisemina.agrarias@uel.br1679-03591676-546Xopendoar:2022-10-04T14:08:24Semina. Ciências Agrárias (Online) - Universidade Estadual de Londrina (UEL)false
dc.title.none.fl_str_mv Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
Perfil de resistência e caracterização de virulência de Escherichia coli isoladas de animais de produção neonatos com diarreia
title Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
spellingShingle Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
Mainardi, Raffaella Menegheti
ESBL
E.coli
Farm animals
Multidrug resistant bacteria
mPCR
Neonatal diarrhea.
ESBL
E. coli
Animais de produção
Bactérias multirresistentes
mPCR
Diarreia neonatal.
title_short Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
title_full Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
title_fullStr Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
title_full_unstemmed Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
title_sort Resistance profile and virulence characterization of Escherichia coli isolated from diarrheic neonatal farm animals
author Mainardi, Raffaella Menegheti
author_facet Mainardi, Raffaella Menegheti
Costa, Arthur Roberto da
Chideroli, Roberta Torres
Favero, Leonardo Mantovani
Alfieri, Amauri Alcindo
Pereira, Ulisses de Pádua
author_role author
author2 Costa, Arthur Roberto da
Chideroli, Roberta Torres
Favero, Leonardo Mantovani
Alfieri, Amauri Alcindo
Pereira, Ulisses de Pádua
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Mainardi, Raffaella Menegheti
Costa, Arthur Roberto da
Chideroli, Roberta Torres
Favero, Leonardo Mantovani
Alfieri, Amauri Alcindo
Pereira, Ulisses de Pádua
dc.subject.por.fl_str_mv ESBL
E.coli
Farm animals
Multidrug resistant bacteria
mPCR
Neonatal diarrhea.
ESBL
E. coli
Animais de produção
Bactérias multirresistentes
mPCR
Diarreia neonatal.
topic ESBL
E.coli
Farm animals
Multidrug resistant bacteria
mPCR
Neonatal diarrhea.
ESBL
E. coli
Animais de produção
Bactérias multirresistentes
mPCR
Diarreia neonatal.
description Neonatal diarrhea is the main cause of early mortality and morbidity in farm animals and the source of huge, direct and indirect, economic husbandry losses. Escherichia coli, a common harmless commensal bacterium, can turn into a main diarrheal pathogen through antibiotic resistance and the expression of genetically acquired virulence factors. In this study, fecal samples obtained from eight farms of animals with clinical signs characteristic of diarrhea were subjected to culture and bacterial isolation. Colonies suggestive of E. coli were identified through morphological and biochemical characteristics. Susceptibility tests to the main veterinary antibacterial agents were conducted using agar disk diffusion followed by phenotypical detection of extended-spectrum ?-lactamase (ESBL). A total of 301 colonies were characterized as E. coli and, out of the 192 that were tested, 134 showed resistance to three or more classes of antimicrobial drugs and were classified as multidrug resistant (MDR), and 14 were ESBL positive. Bacterial DNA was extracted for multiplex PCR (mPCR) using primers to detect ten different genes of diarrheagenic E. coli (DEC). Thirty-six bacterial strains were positive in the mPCR assay, 28 of which were classified as enterotoxigenic E. coli (ETEC) and eight as enteropathogenic E. coli (EPEC). The high prevalence of MDR strains and the detection of ESBL denote the presence of resistance genes in animal husbandry; thus, it is important to isolate and characterize those pathogens and test antimicrobial sensitivity in vitro to avoid ineffective treatments and the spread of antimicrobial resistance, which are the major concerns of Public Health and One Health.
publishDate 2021
dc.date.none.fl_str_mv 2021-02-24
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
bacterial isolation, antibiotic resistance
cultura bacteriana, resistência a antibiótico
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/40548
10.5433/1679-0359.2021v42n2p735
url https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/40548
identifier_str_mv 10.5433/1679-0359.2021v42n2p735
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://ojs.uel.br/revistas/uel/index.php/semagrarias/article/view/40548/29077
dc.rights.driver.fl_str_mv Copyright (c) 2021 Semina: Ciências Agrárias
http://creativecommons.org/licenses/by-nc/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2021 Semina: Ciências Agrárias
http://creativecommons.org/licenses/by-nc/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv UEL
publisher.none.fl_str_mv UEL
dc.source.none.fl_str_mv Semina: Ciências Agrárias; Vol. 42 No. 2 (2021); 735-746
Semina: Ciências Agrárias; v. 42 n. 2 (2021); 735-746
1679-0359
1676-546X
reponame:Semina. Ciências Agrárias (Online)
instname:Universidade Estadual de Londrina (UEL)
instacron:UEL
instname_str Universidade Estadual de Londrina (UEL)
instacron_str UEL
institution UEL
reponame_str Semina. Ciências Agrárias (Online)
collection Semina. Ciências Agrárias (Online)
repository.name.fl_str_mv Semina. Ciências Agrárias (Online) - Universidade Estadual de Londrina (UEL)
repository.mail.fl_str_mv semina.agrarias@uel.br
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