Uso da visão computacional para medição de crescimento fúngico
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Tipo de documento: | Tese |
Idioma: | por |
Título da fonte: | Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) |
Texto Completo: | http://repositorio.uem.br:8080/jspui/handle/1/1168 |
Resumo: | In this area of computer vision there are very few studies about bioinformatics or even directed to agrocomputing, therefore, it becomes almost mandatory the use of bibliographic material related to areas such as biology, medicine and physics, as an example. Concerning the study of the behavior of microorganisms, particularly pathogenic, "in vitro", or also called vegetative growth, there aren?t also many studies related to mycelial growth, what turns the present material into some kind of source for the already published works. The Bioinformatics is a line of research involving multidisciplinary aspects which arose from the moment that the use of computational tools for the analysis of genetic data, biochemical and molecular biology has started. The agrocomputing - coined term to refer to information technology applied to agriculture - has gained space and becoming more and more organized, while in the field of plantpathology computer technology has been frequently used in the epidemiology of plant diseases. Computer Vision Systems in non-contact measurements are especially useful when dealing with small objects with complex geometry, for which conventional instruments cannot be used. The main objective of this work is to measure biological events as fungal growth, for example, which are not able to be captured by natural vision, but through computational tools such as computer vision. For each fungus were set up tables, with the measurement performed by the traditional way, every 12 hours, with another measurement using computer vision by digital ruler every each hour and, also, a junction table of both ones, turning the computer measurements into 12-hour measurements. The method of computer vision proved to be appropriate for measuring fungal growth and is a technique for easy operation, with greater accuracy for measuring mycelial growth of fungus when compared to the methods of the ruler and digital caliper. There was algo found an overestimation of the area of mycelial colony when methods of rule and the digital caliper were used. |
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Uso da visão computacional para medição de crescimento fúngicoAgroinformáticaVisão computacionalBioinformáticaInformática aplicada à agriculturaCiências AgráriasAgronomiaIn this area of computer vision there are very few studies about bioinformatics or even directed to agrocomputing, therefore, it becomes almost mandatory the use of bibliographic material related to areas such as biology, medicine and physics, as an example. Concerning the study of the behavior of microorganisms, particularly pathogenic, "in vitro", or also called vegetative growth, there aren?t also many studies related to mycelial growth, what turns the present material into some kind of source for the already published works. The Bioinformatics is a line of research involving multidisciplinary aspects which arose from the moment that the use of computational tools for the analysis of genetic data, biochemical and molecular biology has started. The agrocomputing - coined term to refer to information technology applied to agriculture - has gained space and becoming more and more organized, while in the field of plantpathology computer technology has been frequently used in the epidemiology of plant diseases. Computer Vision Systems in non-contact measurements are especially useful when dealing with small objects with complex geometry, for which conventional instruments cannot be used. The main objective of this work is to measure biological events as fungal growth, for example, which are not able to be captured by natural vision, but through computational tools such as computer vision. For each fungus were set up tables, with the measurement performed by the traditional way, every 12 hours, with another measurement using computer vision by digital ruler every each hour and, also, a junction table of both ones, turning the computer measurements into 12-hour measurements. The method of computer vision proved to be appropriate for measuring fungal growth and is a technique for easy operation, with greater accuracy for measuring mycelial growth of fungus when compared to the methods of the ruler and digital caliper. There was algo found an overestimation of the area of mycelial colony when methods of rule and the digital caliper were used.Atualmente existem poucos trabalhos na área da visão computacional voltados à bioinformática ou à agroinformática sendo quase obrigatória a utilização de material bibliográfico de áreas correlatas. A bioinformática é uma linha de pesquisa que envolve aspectos multidisciplinares e iniciou na utilização de ferramentas computacionais para a análise de dados genéticos. Estudos do comportamento de microrganismos, como o crescimento micelial, vêm sendo empregando basicamente réguas para quantificá-lo, ignorando outras metodologias. Na fitopatologia, a informática tem sido mais frequentemente utilizada na epidemiologia de doenças de plantas. Sistemas de Visão Computacional em medições sem contato são especialmente úteis quando se têm objetos pequenos ou de geometria complexa, nos quais instrumentos convencionais não podem ser utilizados. O objetivo principal deste trabalho foi medir eventos biológicos que a visão não consegue captar, no caso, crescimento fúngico, utilizando ferramentas computacionais, como a visão computacional. Para cada espécie fúngica foram preparadas tabelas, com a medição executada empregando paquímetro (método tradicional), com a medição usando a visão computacional por meio de régua digital e de área baseado na limiarização de Otsu a cada 12 horas. O método da visão computacional limiarizada apresentou-se adequado para medição de crescimento fúngico e constitui numa técnica viável, apresentando maior precisão para medição de crescimento micelial de fungos quando comparado aos métodos da régua digital e do paquímetro. Também foi verificada uma superestimação de área de colônia micelial quando empregados os métodos da régua digital e do paquímetro.45 fUniversidade Estadual de MaringáBrasilUEMMaringá, PRJoão Batista VidaKátia Regina Freitas Schwan Estrada - UEMDauri José Tessmann - UEMAntonio Carlos Loureiro Lino - UEMMarcelo Giovanetti Canteri - UEMColella, Julio Cesar Tocacelli2018-04-04T17:26:24Z2018-04-04T17:26:24Z2012info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesishttp://repositorio.uem.br:8080/jspui/handle/1/1168porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)instname:Universidade Estadual de Maringá (UEM)instacron:UEM2018-10-22T18:14:55Zoai:localhost:1/1168Repositório InstitucionalPUBhttp://repositorio.uem.br:8080/oai/requestopendoar:2024-04-23T14:54:04.419895Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) - Universidade Estadual de Maringá (UEM)false |
dc.title.none.fl_str_mv |
Uso da visão computacional para medição de crescimento fúngico |
title |
Uso da visão computacional para medição de crescimento fúngico |
spellingShingle |
Uso da visão computacional para medição de crescimento fúngico Colella, Julio Cesar Tocacelli Agroinformática Visão computacional Bioinformática Informática aplicada à agricultura Ciências Agrárias Agronomia |
title_short |
Uso da visão computacional para medição de crescimento fúngico |
title_full |
Uso da visão computacional para medição de crescimento fúngico |
title_fullStr |
Uso da visão computacional para medição de crescimento fúngico |
title_full_unstemmed |
Uso da visão computacional para medição de crescimento fúngico |
title_sort |
Uso da visão computacional para medição de crescimento fúngico |
author |
Colella, Julio Cesar Tocacelli |
author_facet |
Colella, Julio Cesar Tocacelli |
author_role |
author |
dc.contributor.none.fl_str_mv |
João Batista Vida Kátia Regina Freitas Schwan Estrada - UEM Dauri José Tessmann - UEM Antonio Carlos Loureiro Lino - UEM Marcelo Giovanetti Canteri - UEM |
dc.contributor.author.fl_str_mv |
Colella, Julio Cesar Tocacelli |
dc.subject.por.fl_str_mv |
Agroinformática Visão computacional Bioinformática Informática aplicada à agricultura Ciências Agrárias Agronomia |
topic |
Agroinformática Visão computacional Bioinformática Informática aplicada à agricultura Ciências Agrárias Agronomia |
description |
In this area of computer vision there are very few studies about bioinformatics or even directed to agrocomputing, therefore, it becomes almost mandatory the use of bibliographic material related to areas such as biology, medicine and physics, as an example. Concerning the study of the behavior of microorganisms, particularly pathogenic, "in vitro", or also called vegetative growth, there aren?t also many studies related to mycelial growth, what turns the present material into some kind of source for the already published works. The Bioinformatics is a line of research involving multidisciplinary aspects which arose from the moment that the use of computational tools for the analysis of genetic data, biochemical and molecular biology has started. The agrocomputing - coined term to refer to information technology applied to agriculture - has gained space and becoming more and more organized, while in the field of plantpathology computer technology has been frequently used in the epidemiology of plant diseases. Computer Vision Systems in non-contact measurements are especially useful when dealing with small objects with complex geometry, for which conventional instruments cannot be used. The main objective of this work is to measure biological events as fungal growth, for example, which are not able to be captured by natural vision, but through computational tools such as computer vision. For each fungus were set up tables, with the measurement performed by the traditional way, every 12 hours, with another measurement using computer vision by digital ruler every each hour and, also, a junction table of both ones, turning the computer measurements into 12-hour measurements. The method of computer vision proved to be appropriate for measuring fungal growth and is a technique for easy operation, with greater accuracy for measuring mycelial growth of fungus when compared to the methods of the ruler and digital caliper. There was algo found an overestimation of the area of mycelial colony when methods of rule and the digital caliper were used. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012 2018-04-04T17:26:24Z 2018-04-04T17:26:24Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/doctoralThesis |
format |
doctoralThesis |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://repositorio.uem.br:8080/jspui/handle/1/1168 |
url |
http://repositorio.uem.br:8080/jspui/handle/1/1168 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Universidade Estadual de Maringá Brasil UEM Maringá, PR |
publisher.none.fl_str_mv |
Universidade Estadual de Maringá Brasil UEM Maringá, PR |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) instname:Universidade Estadual de Maringá (UEM) instacron:UEM |
instname_str |
Universidade Estadual de Maringá (UEM) |
instacron_str |
UEM |
institution |
UEM |
reponame_str |
Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) |
collection |
Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) |
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Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) - Universidade Estadual de Maringá (UEM) |
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