Uso da visão computacional para medição de crescimento fúngico

Detalhes bibliográficos
Autor(a) principal: Colella, Julio Cesar Tocacelli
Data de Publicação: 2012
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
Texto Completo: http://repositorio.uem.br:8080/jspui/handle/1/1168
Resumo: In this area of computer vision there are very few studies about bioinformatics or even directed to agrocomputing, therefore, it becomes almost mandatory the use of bibliographic material related to areas such as biology, medicine and physics, as an example. Concerning the study of the behavior of microorganisms, particularly pathogenic, "in vitro", or also called vegetative growth, there aren?t also many studies related to mycelial growth, what turns the present material into some kind of source for the already published works. The Bioinformatics is a line of research involving multidisciplinary aspects which arose from the moment that the use of computational tools for the analysis of genetic data, biochemical and molecular biology has started. The agrocomputing - coined term to refer to information technology applied to agriculture - has gained space and becoming more and more organized, while in the field of plantpathology computer technology has been frequently used in the epidemiology of plant diseases. Computer Vision Systems in non-contact measurements are especially useful when dealing with small objects with complex geometry, for which conventional instruments cannot be used. The main objective of this work is to measure biological events as fungal growth, for example, which are not able to be captured by natural vision, but through computational tools such as computer vision. For each fungus were set up tables, with the measurement performed by the traditional way, every 12 hours, with another measurement using computer vision by digital ruler every each hour and, also, a junction table of both ones, turning the computer measurements into 12-hour measurements. The method of computer vision proved to be appropriate for measuring fungal growth and is a technique for easy operation, with greater accuracy for measuring mycelial growth of fungus when compared to the methods of the ruler and digital caliper. There was algo found an overestimation of the area of mycelial colony when methods of rule and the digital caliper were used.
id UEM-10_6cbf4ae1632a9dd16d1eb2ad32c46b6e
oai_identifier_str oai:localhost:1/1168
network_acronym_str UEM-10
network_name_str Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
repository_id_str
spelling Uso da visão computacional para medição de crescimento fúngicoAgroinformáticaVisão computacionalBioinformáticaInformática aplicada à agriculturaCiências AgráriasAgronomiaIn this area of computer vision there are very few studies about bioinformatics or even directed to agrocomputing, therefore, it becomes almost mandatory the use of bibliographic material related to areas such as biology, medicine and physics, as an example. Concerning the study of the behavior of microorganisms, particularly pathogenic, "in vitro", or also called vegetative growth, there aren?t also many studies related to mycelial growth, what turns the present material into some kind of source for the already published works. The Bioinformatics is a line of research involving multidisciplinary aspects which arose from the moment that the use of computational tools for the analysis of genetic data, biochemical and molecular biology has started. The agrocomputing - coined term to refer to information technology applied to agriculture - has gained space and becoming more and more organized, while in the field of plantpathology computer technology has been frequently used in the epidemiology of plant diseases. Computer Vision Systems in non-contact measurements are especially useful when dealing with small objects with complex geometry, for which conventional instruments cannot be used. The main objective of this work is to measure biological events as fungal growth, for example, which are not able to be captured by natural vision, but through computational tools such as computer vision. For each fungus were set up tables, with the measurement performed by the traditional way, every 12 hours, with another measurement using computer vision by digital ruler every each hour and, also, a junction table of both ones, turning the computer measurements into 12-hour measurements. The method of computer vision proved to be appropriate for measuring fungal growth and is a technique for easy operation, with greater accuracy for measuring mycelial growth of fungus when compared to the methods of the ruler and digital caliper. There was algo found an overestimation of the area of mycelial colony when methods of rule and the digital caliper were used.Atualmente existem poucos trabalhos na área da visão computacional voltados à bioinformática ou à agroinformática sendo quase obrigatória a utilização de material bibliográfico de áreas correlatas. A bioinformática é uma linha de pesquisa que envolve aspectos multidisciplinares e iniciou na utilização de ferramentas computacionais para a análise de dados genéticos. Estudos do comportamento de microrganismos, como o crescimento micelial, vêm sendo empregando basicamente réguas para quantificá-lo, ignorando outras metodologias. Na fitopatologia, a informática tem sido mais frequentemente utilizada na epidemiologia de doenças de plantas. Sistemas de Visão Computacional em medições sem contato são especialmente úteis quando se têm objetos pequenos ou de geometria complexa, nos quais instrumentos convencionais não podem ser utilizados. O objetivo principal deste trabalho foi medir eventos biológicos que a visão não consegue captar, no caso, crescimento fúngico, utilizando ferramentas computacionais, como a visão computacional. Para cada espécie fúngica foram preparadas tabelas, com a medição executada empregando paquímetro (método tradicional), com a medição usando a visão computacional por meio de régua digital e de área baseado na limiarização de Otsu a cada 12 horas. O método da visão computacional limiarizada apresentou-se adequado para medição de crescimento fúngico e constitui numa técnica viável, apresentando maior precisão para medição de crescimento micelial de fungos quando comparado aos métodos da régua digital e do paquímetro. Também foi verificada uma superestimação de área de colônia micelial quando empregados os métodos da régua digital e do paquímetro.45 fUniversidade Estadual de MaringáBrasilUEMMaringá, PRJoão Batista VidaKátia Regina Freitas Schwan Estrada - UEMDauri José Tessmann - UEMAntonio Carlos Loureiro Lino - UEMMarcelo Giovanetti Canteri - UEMColella, Julio Cesar Tocacelli2018-04-04T17:26:24Z2018-04-04T17:26:24Z2012info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesishttp://repositorio.uem.br:8080/jspui/handle/1/1168porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)instname:Universidade Estadual de Maringá (UEM)instacron:UEM2018-10-22T18:14:55Zoai:localhost:1/1168Repositório InstitucionalPUBhttp://repositorio.uem.br:8080/oai/requestopendoar:2024-04-23T14:54:04.419895Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) - Universidade Estadual de Maringá (UEM)false
dc.title.none.fl_str_mv Uso da visão computacional para medição de crescimento fúngico
title Uso da visão computacional para medição de crescimento fúngico
spellingShingle Uso da visão computacional para medição de crescimento fúngico
Colella, Julio Cesar Tocacelli
Agroinformática
Visão computacional
Bioinformática
Informática aplicada à agricultura
Ciências Agrárias
Agronomia
title_short Uso da visão computacional para medição de crescimento fúngico
title_full Uso da visão computacional para medição de crescimento fúngico
title_fullStr Uso da visão computacional para medição de crescimento fúngico
title_full_unstemmed Uso da visão computacional para medição de crescimento fúngico
title_sort Uso da visão computacional para medição de crescimento fúngico
author Colella, Julio Cesar Tocacelli
author_facet Colella, Julio Cesar Tocacelli
author_role author
dc.contributor.none.fl_str_mv João Batista Vida
Kátia Regina Freitas Schwan Estrada - UEM
Dauri José Tessmann - UEM
Antonio Carlos Loureiro Lino - UEM
Marcelo Giovanetti Canteri - UEM
dc.contributor.author.fl_str_mv Colella, Julio Cesar Tocacelli
dc.subject.por.fl_str_mv Agroinformática
Visão computacional
Bioinformática
Informática aplicada à agricultura
Ciências Agrárias
Agronomia
topic Agroinformática
Visão computacional
Bioinformática
Informática aplicada à agricultura
Ciências Agrárias
Agronomia
description In this area of computer vision there are very few studies about bioinformatics or even directed to agrocomputing, therefore, it becomes almost mandatory the use of bibliographic material related to areas such as biology, medicine and physics, as an example. Concerning the study of the behavior of microorganisms, particularly pathogenic, "in vitro", or also called vegetative growth, there aren?t also many studies related to mycelial growth, what turns the present material into some kind of source for the already published works. The Bioinformatics is a line of research involving multidisciplinary aspects which arose from the moment that the use of computational tools for the analysis of genetic data, biochemical and molecular biology has started. The agrocomputing - coined term to refer to information technology applied to agriculture - has gained space and becoming more and more organized, while in the field of plantpathology computer technology has been frequently used in the epidemiology of plant diseases. Computer Vision Systems in non-contact measurements are especially useful when dealing with small objects with complex geometry, for which conventional instruments cannot be used. The main objective of this work is to measure biological events as fungal growth, for example, which are not able to be captured by natural vision, but through computational tools such as computer vision. For each fungus were set up tables, with the measurement performed by the traditional way, every 12 hours, with another measurement using computer vision by digital ruler every each hour and, also, a junction table of both ones, turning the computer measurements into 12-hour measurements. The method of computer vision proved to be appropriate for measuring fungal growth and is a technique for easy operation, with greater accuracy for measuring mycelial growth of fungus when compared to the methods of the ruler and digital caliper. There was algo found an overestimation of the area of mycelial colony when methods of rule and the digital caliper were used.
publishDate 2012
dc.date.none.fl_str_mv 2012
2018-04-04T17:26:24Z
2018-04-04T17:26:24Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.uem.br:8080/jspui/handle/1/1168
url http://repositorio.uem.br:8080/jspui/handle/1/1168
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Estadual de Maringá
Brasil
UEM
Maringá, PR
publisher.none.fl_str_mv Universidade Estadual de Maringá
Brasil
UEM
Maringá, PR
dc.source.none.fl_str_mv reponame:Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
instname:Universidade Estadual de Maringá (UEM)
instacron:UEM
instname_str Universidade Estadual de Maringá (UEM)
instacron_str UEM
institution UEM
reponame_str Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
collection Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
repository.name.fl_str_mv Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) - Universidade Estadual de Maringá (UEM)
repository.mail.fl_str_mv
_version_ 1813258637581221888