Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná

Detalhes bibliográficos
Autor(a) principal: Silva, Jaqueline Manzatti da
Data de Publicação: 2011
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
Texto Completo: http://repositorio.uem.br:8080/jspui/handle/1/1377
Resumo: : The Cassava common mosaic virus (CsCMV) is considered to be more frequent in central and south of Brazil producing areas. From this perspective, the objective of this work was to detect and identify a virus in cassava plants from in vitro micropropagation, and collected in producing areas of Paranavaí, northwest of Paraná, using serological and molecular methods. Indirect-PTA-ELISA tests were used to test cassava leaves in 1/300 dilution, using a polyclonal antiserum specific for CsCMV diluted 1/10.000. From 65 samples obtained by micropropagation, 10 were healthy tested. The serological tests showed that one out of 61 samples from the producing region of Paranavaí was free of the virus. Of the 20 samples from the UEM germplasm collection, five were free of the virus. The same samples were also tested through immunocapture (IC-RT-PCR). The cassava leaves were diluted 1/10 and tested using a purified IgG specific for CsCMV. From the 16 samples identified as virus-free by indirect-PTA-ELISA, and later tested by IC-RT-PCR, 10 showed infected by the virus. Of the five plants that had presented resulted negative for the PTA-ELISA-indirect one, all had shown resulted positive for the IC-RT-PCR. Five out of 10 plants from the in vitro micropropagation were free of the virus. From 61 samples collected in Paranavaí field areas, only one was virus free as confirmed by indirect-PTA-ELISA and IC-RT-PCR. To confirm the identity of the virus detected by IC-RT-PCR, the amplified PCR products were cloned and sequenced. Comparing the obtained nucleotide sequences with those of other Potexvirus from GenBank, it was found 87% identity with a sequence of CsCMV, confirming the virus detected in this work represents a strain of Cassava common mosaic vírus.
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spelling Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do ParanáSorological detection and molecular of Cassava common mosaic virus in cassava in the northwest region of ParanáMandioca (Manihot esculenta Crantz)Vírus CsCMVIdentificaçãoNoroeste do ParanáPlantas matrizesLimpeza clonalCassava common mosaic vírus (CsCMV)PTA-ELISA-indiretoIC-RT-PCRBrasil.Cassava common mosaic virus (CsCMV)IC-RT-PCRIndirect-PTA-ELISANorthwestParanáStateBrazil.Ciências AgráriasAgronomia: The Cassava common mosaic virus (CsCMV) is considered to be more frequent in central and south of Brazil producing areas. From this perspective, the objective of this work was to detect and identify a virus in cassava plants from in vitro micropropagation, and collected in producing areas of Paranavaí, northwest of Paraná, using serological and molecular methods. Indirect-PTA-ELISA tests were used to test cassava leaves in 1/300 dilution, using a polyclonal antiserum specific for CsCMV diluted 1/10.000. From 65 samples obtained by micropropagation, 10 were healthy tested. The serological tests showed that one out of 61 samples from the producing region of Paranavaí was free of the virus. Of the 20 samples from the UEM germplasm collection, five were free of the virus. The same samples were also tested through immunocapture (IC-RT-PCR). The cassava leaves were diluted 1/10 and tested using a purified IgG specific for CsCMV. From the 16 samples identified as virus-free by indirect-PTA-ELISA, and later tested by IC-RT-PCR, 10 showed infected by the virus. Of the five plants that had presented resulted negative for the PTA-ELISA-indirect one, all had shown resulted positive for the IC-RT-PCR. Five out of 10 plants from the in vitro micropropagation were free of the virus. From 61 samples collected in Paranavaí field areas, only one was virus free as confirmed by indirect-PTA-ELISA and IC-RT-PCR. To confirm the identity of the virus detected by IC-RT-PCR, the amplified PCR products were cloned and sequenced. Comparing the obtained nucleotide sequences with those of other Potexvirus from GenBank, it was found 87% identity with a sequence of CsCMV, confirming the virus detected in this work represents a strain of Cassava common mosaic vírus.O vírus do mosaico comum da mandioca (Cassava common mosaic vírus - CsCMV) é tido como o mais frequente nas áreas produtoras do centro sul do Brasil. Nessa perspectiva, o objetivo deste trabalho foi detectar e identificar o CsCMV por meio de métodos sorológicos e moleculares em plantas matrizes de mandioca, obtidas pela micropropagação in vitro, e realizar um levantamento da distribuição do vírus na região produtora de Paranavaí, no Noroeste do Paraná. O teste sorológico utilizado foi o PTA-ELISA-indireto com folhas de mandioca diluídas a 1/300, utilizando-se um antissoro policlonal específico para o CsCMV diluído a 1/10.000. Os testes sorológicos mostraram que, das 61 amostras coletadas na região produtora de Paranavaí-PR, apenas uma estava sadia. Das 20 amostras do Banco de Germoplasma da Universidade Estadual de Maringá, cinco estavam livres do vírus, e das 65 amostras micropropagadas in vitro, 10 se apresentaram isentas do mesmo. Utilizando a técnica de imunocaptura (IC-RT-PCR), foram testadas folhas de mandioca diluídas a 1/10 com a IgG (2 μl/ml) purificada do antissoro para o CsCMV, seguido da reação de RT-PCR. As 16 amostras apontadas como livres de vírus pelo PTA-ELISA-indireto, foram testadas por IC-RT-PCR, e 10 se apresentaram infectadas. Das cinco plantas que apresentaram resultados negativos para o PTAELISA-indireto, todas mostraram resultados positivos para o IC-RT-PCR. Já das 10 plantas oriundas da micropropagação in vitro, e tidas como sadias pelo PTA-ELISA-indireto, somente cinco se mostraram livres do vírus pela IC-RT-PCR. Apenas uma das 61 amostras provenientes de Paranavaí foi confirmada como sadia pelo PTAELISA-indireto, como também pela IC-RT-PCR. Para confirmação da identidade do vírus detectado pelo IC-RT-PCR, foi realizada a clonagem e o sequenciamento do produto de PCR obtido em três amplificações. As sequências de nucleotídeos obtidas foram comparadas com as de outros Potexvirus depositadas no GenBank, constatando-se identidade de 87% com a sequência de uma estirpe do Cassava common mosaic virus já depositada, confirmando assim que o vírus detectado é uma estirpe do Cassava common mosaic virus.xiv, 46 fUniversidade Estadual de MaringáBrasilUEMMaringá, PRPrograma de Pós-Graduação em Genética e MelhoramentoEliezer Rodrigues de SoutoJosé Segundo GiampanAdriana Gonela - UEMSilva, Jaqueline Manzatti da2018-04-05T16:59:57Z2018-04-05T16:59:57Z2011info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesishttp://repositorio.uem.br:8080/jspui/handle/1/1377porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)instname:Universidade Estadual de Maringá (UEM)instacron:UEM2018-04-05T16:59:57Zoai:localhost:1/1377Repositório InstitucionalPUBhttp://repositorio.uem.br:8080/oai/requestopendoar:2024-04-23T14:54:18.752877Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) - Universidade Estadual de Maringá (UEM)false
dc.title.none.fl_str_mv Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
Sorological detection and molecular of Cassava common mosaic virus in cassava in the northwest region of Paraná
title Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
spellingShingle Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
Silva, Jaqueline Manzatti da
Mandioca (Manihot esculenta Crantz)
Vírus CsCMV
Identificação
Noroeste do Paraná
Plantas matrizes
Limpeza clonal
Cassava common mosaic vírus (CsCMV)
PTA-ELISA-indireto
IC-RT-PCR
Brasil.
Cassava common mosaic virus (CsCMV)
IC-RT-PCR
Indirect-PTA-ELISA
Northwest
Paraná
State
Brazil.
Ciências Agrárias
Agronomia
title_short Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
title_full Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
title_fullStr Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
title_full_unstemmed Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
title_sort Detecção sorológica e molecular do Cassava common mosaic virus em mandioca na região noroeste do Paraná
author Silva, Jaqueline Manzatti da
author_facet Silva, Jaqueline Manzatti da
author_role author
dc.contributor.none.fl_str_mv Eliezer Rodrigues de Souto
José Segundo Giampan
Adriana Gonela - UEM
dc.contributor.author.fl_str_mv Silva, Jaqueline Manzatti da
dc.subject.por.fl_str_mv Mandioca (Manihot esculenta Crantz)
Vírus CsCMV
Identificação
Noroeste do Paraná
Plantas matrizes
Limpeza clonal
Cassava common mosaic vírus (CsCMV)
PTA-ELISA-indireto
IC-RT-PCR
Brasil.
Cassava common mosaic virus (CsCMV)
IC-RT-PCR
Indirect-PTA-ELISA
Northwest
Paraná
State
Brazil.
Ciências Agrárias
Agronomia
topic Mandioca (Manihot esculenta Crantz)
Vírus CsCMV
Identificação
Noroeste do Paraná
Plantas matrizes
Limpeza clonal
Cassava common mosaic vírus (CsCMV)
PTA-ELISA-indireto
IC-RT-PCR
Brasil.
Cassava common mosaic virus (CsCMV)
IC-RT-PCR
Indirect-PTA-ELISA
Northwest
Paraná
State
Brazil.
Ciências Agrárias
Agronomia
description : The Cassava common mosaic virus (CsCMV) is considered to be more frequent in central and south of Brazil producing areas. From this perspective, the objective of this work was to detect and identify a virus in cassava plants from in vitro micropropagation, and collected in producing areas of Paranavaí, northwest of Paraná, using serological and molecular methods. Indirect-PTA-ELISA tests were used to test cassava leaves in 1/300 dilution, using a polyclonal antiserum specific for CsCMV diluted 1/10.000. From 65 samples obtained by micropropagation, 10 were healthy tested. The serological tests showed that one out of 61 samples from the producing region of Paranavaí was free of the virus. Of the 20 samples from the UEM germplasm collection, five were free of the virus. The same samples were also tested through immunocapture (IC-RT-PCR). The cassava leaves were diluted 1/10 and tested using a purified IgG specific for CsCMV. From the 16 samples identified as virus-free by indirect-PTA-ELISA, and later tested by IC-RT-PCR, 10 showed infected by the virus. Of the five plants that had presented resulted negative for the PTA-ELISA-indirect one, all had shown resulted positive for the IC-RT-PCR. Five out of 10 plants from the in vitro micropropagation were free of the virus. From 61 samples collected in Paranavaí field areas, only one was virus free as confirmed by indirect-PTA-ELISA and IC-RT-PCR. To confirm the identity of the virus detected by IC-RT-PCR, the amplified PCR products were cloned and sequenced. Comparing the obtained nucleotide sequences with those of other Potexvirus from GenBank, it was found 87% identity with a sequence of CsCMV, confirming the virus detected in this work represents a strain of Cassava common mosaic vírus.
publishDate 2011
dc.date.none.fl_str_mv 2011
2018-04-05T16:59:57Z
2018-04-05T16:59:57Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.uem.br:8080/jspui/handle/1/1377
url http://repositorio.uem.br:8080/jspui/handle/1/1377
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Estadual de Maringá
Brasil
UEM
Maringá, PR
Programa de Pós-Graduação em Genética e Melhoramento
publisher.none.fl_str_mv Universidade Estadual de Maringá
Brasil
UEM
Maringá, PR
Programa de Pós-Graduação em Genética e Melhoramento
dc.source.none.fl_str_mv reponame:Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
instname:Universidade Estadual de Maringá (UEM)
instacron:UEM
instname_str Universidade Estadual de Maringá (UEM)
instacron_str UEM
institution UEM
reponame_str Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
collection Repositório Institucional da Universidade Estadual de Maringá (RI-UEM)
repository.name.fl_str_mv Repositório Institucional da Universidade Estadual de Maringá (RI-UEM) - Universidade Estadual de Maringá (UEM)
repository.mail.fl_str_mv
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