Identificação de uma nova fitase bacteriana através de prospecção metagenômica

Detalhes bibliográficos
Autor(a) principal: Farias, Nathálya Carvalho
Data de Publicação: 2018
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UEPB
Texto Completo: http://tede.bc.uepb.edu.br/jspui/handle/tede/3188
Resumo: The bacterial diversity of environmental samples and their potencial are still poorly explored. Metagenomics approaches offer the opportunity for the prospection of genes with biotechnological interest from non-cultured microorganisms in the laboratory. Materials in the process of composting exhibit high microbiological activity, which indicates that the environment is conducive to the degradation of lignocellulosic material. In this context, several enzymes have been identified by catalyzing these reactions. Phytases are widely produced phosphatase enzymes that hydrolyze phytate by releasing phosphorus and chelated minerals. Due to this potential, these enzymes have become easily interesting for the biotech field. The aim was to investigate the metagenomic potential for the identification of genes with phytase activity. After obtaining the material, DNA extraction was performed, followed by its purification. Total extracted DNA was used to construct the metagenomic library with cosmid vector through commercial kits (EPICENTRE). Positive clones for phytase activity were sequenced and analyzed. The prospection carried out in this study identified a gene (PhyRC001) encoding a phytase where the amino acid identity between PhyRC001 and its nearest published homologs is less than 60%.
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spelling Meneses, Carlos Henrique Salvino Gadelha03859565419Neder, Diogo Gonçalves04730853644Bonilla, German Andres Estrada70016053443http://lattes.cnpq.br/1156250587826233Farias, Nathálya Carvalho2019-02-18T14:26:02Z2018-02-26FARIAS, N. C. Identificação de uma nova fitase bacteriana através de prospecção metagenômica. 2018. 67f. Dissertação (Programa de Pós-Graduação em Ciências Agrárias - PPGCA) - Universidade Estadual da Paraíba, Campina Grande, 2018.http://tede.bc.uepb.edu.br/jspui/handle/tede/3188The bacterial diversity of environmental samples and their potencial are still poorly explored. Metagenomics approaches offer the opportunity for the prospection of genes with biotechnological interest from non-cultured microorganisms in the laboratory. Materials in the process of composting exhibit high microbiological activity, which indicates that the environment is conducive to the degradation of lignocellulosic material. In this context, several enzymes have been identified by catalyzing these reactions. Phytases are widely produced phosphatase enzymes that hydrolyze phytate by releasing phosphorus and chelated minerals. Due to this potential, these enzymes have become easily interesting for the biotech field. The aim was to investigate the metagenomic potential for the identification of genes with phytase activity. After obtaining the material, DNA extraction was performed, followed by its purification. Total extracted DNA was used to construct the metagenomic library with cosmid vector through commercial kits (EPICENTRE). Positive clones for phytase activity were sequenced and analyzed. The prospection carried out in this study identified a gene (PhyRC001) encoding a phytase where the amino acid identity between PhyRC001 and its nearest published homologs is less than 60%.A diversidade bacteriana de amostras ambientais e seu potencial ainda são pouco explorados. As abordagens metagenômicas oferecem a oportunidade para a prospecção de genes de interesse biotecnológico a partir de microrganismos não-cultiváveis em laboratório. Materiais em processo de compostagem exibem grande atividade microbiológica, o que torna o ambiente propício para a degradação de material lignocelulósico. Neste contexto, diversas enzimas vêm sendo identificadas por catalisarem estas reações. As fitases são enzimas fosfatases amplamente produzidas que hidrolisam o fitato liberando fósforo e minerais quelados. Devido a este potencial, estas enzimas têm se tornado facilmente interessantes para o campo biotecnológico. Procurou-se assim, investigar o potencial metagenômico para a identificação de genes com atividade fitásica. Após a obtenção do material, foi realizada a extração de DNA, seguida da etapa de purificação. Usou-se o DNA total extraído para construção de biblioteca metagenômica em vetor cosmídeo, através de kits comerciais (EPICENTRE). Os clones positivos para atividade fitásica foram sequenciados e analisados. A prospecção realizada neste estudo, identificou um gene (PhyRC001) que codifica uma fitase, onde, a identidade de aminoácidos entre PhyRC001 e os seus homólogos mais próximos publicados são inferiores a 60%.Submitted by Jean Medeiros (jeanletras@uepb.edu.br) on 2018-12-03T14:29:23Z No. of bitstreams: 1 PDF - Nathálya Carvalho Farias.pdf: 52901991 bytes, checksum: 8d26d16d185f1620ca5f22dbd3aaac71 (MD5)Approved for entry into archive by Secta BC (secta.csu.bc@uepb.edu.br) on 2019-02-18T14:26:02Z (GMT) No. of bitstreams: 1 PDF - Nathálya Carvalho Farias.pdf: 52901991 bytes, checksum: 8d26d16d185f1620ca5f22dbd3aaac71 (MD5)Made available in DSpace on 2019-02-18T14:26:02Z (GMT). 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dc.title.por.fl_str_mv Identificação de uma nova fitase bacteriana através de prospecção metagenômica
dc.title.alternative.eng.fl_str_mv Identification of a new bacterial phytase through metagenomic prospection
title Identificação de uma nova fitase bacteriana através de prospecção metagenômica
spellingShingle Identificação de uma nova fitase bacteriana através de prospecção metagenômica
Farias, Nathálya Carvalho
Oryza sativa L.
Restos culturais
Metagenômica funcional
Functional metagenomics
Cultural remains
CIENCIAS AGRARIAS
title_short Identificação de uma nova fitase bacteriana através de prospecção metagenômica
title_full Identificação de uma nova fitase bacteriana através de prospecção metagenômica
title_fullStr Identificação de uma nova fitase bacteriana através de prospecção metagenômica
title_full_unstemmed Identificação de uma nova fitase bacteriana através de prospecção metagenômica
title_sort Identificação de uma nova fitase bacteriana através de prospecção metagenômica
author Farias, Nathálya Carvalho
author_facet Farias, Nathálya Carvalho
author_role author
dc.contributor.advisor1.fl_str_mv Meneses, Carlos Henrique Salvino Gadelha
dc.contributor.advisor1ID.fl_str_mv 03859565419
dc.contributor.referee1.fl_str_mv Neder, Diogo Gonçalves
dc.contributor.referee1ID.fl_str_mv 04730853644
dc.contributor.referee2.fl_str_mv Bonilla, German Andres Estrada
dc.contributor.authorID.fl_str_mv 70016053443
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1156250587826233
dc.contributor.author.fl_str_mv Farias, Nathálya Carvalho
contributor_str_mv Meneses, Carlos Henrique Salvino Gadelha
Neder, Diogo Gonçalves
Bonilla, German Andres Estrada
dc.subject.por.fl_str_mv Oryza sativa L.
Restos culturais
Metagenômica funcional
topic Oryza sativa L.
Restos culturais
Metagenômica funcional
Functional metagenomics
Cultural remains
CIENCIAS AGRARIAS
dc.subject.eng.fl_str_mv Functional metagenomics
Cultural remains
dc.subject.cnpq.fl_str_mv CIENCIAS AGRARIAS
description The bacterial diversity of environmental samples and their potencial are still poorly explored. Metagenomics approaches offer the opportunity for the prospection of genes with biotechnological interest from non-cultured microorganisms in the laboratory. Materials in the process of composting exhibit high microbiological activity, which indicates that the environment is conducive to the degradation of lignocellulosic material. In this context, several enzymes have been identified by catalyzing these reactions. Phytases are widely produced phosphatase enzymes that hydrolyze phytate by releasing phosphorus and chelated minerals. Due to this potential, these enzymes have become easily interesting for the biotech field. The aim was to investigate the metagenomic potential for the identification of genes with phytase activity. After obtaining the material, DNA extraction was performed, followed by its purification. Total extracted DNA was used to construct the metagenomic library with cosmid vector through commercial kits (EPICENTRE). Positive clones for phytase activity were sequenced and analyzed. The prospection carried out in this study identified a gene (PhyRC001) encoding a phytase where the amino acid identity between PhyRC001 and its nearest published homologs is less than 60%.
publishDate 2018
dc.date.issued.fl_str_mv 2018-02-26
dc.date.accessioned.fl_str_mv 2019-02-18T14:26:02Z
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dc.identifier.citation.fl_str_mv FARIAS, N. C. Identificação de uma nova fitase bacteriana através de prospecção metagenômica. 2018. 67f. Dissertação (Programa de Pós-Graduação em Ciências Agrárias - PPGCA) - Universidade Estadual da Paraíba, Campina Grande, 2018.
dc.identifier.uri.fl_str_mv http://tede.bc.uepb.edu.br/jspui/handle/tede/3188
identifier_str_mv FARIAS, N. C. Identificação de uma nova fitase bacteriana através de prospecção metagenômica. 2018. 67f. Dissertação (Programa de Pós-Graduação em Ciências Agrárias - PPGCA) - Universidade Estadual da Paraíba, Campina Grande, 2018.
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