Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks

Detalhes bibliográficos
Autor(a) principal: Caldas, Michel Antonio Tosin
Data de Publicação: 2021
Outros Autores: michel.tosin@uerj.br
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UERJ
Texto Completo: http://www.bdtd.uerj.br/handle/1/20326
Resumo: Outbreaks due infectious diseases has been drawing attention of the scientific community in the last few years. The recognition of the aggressive effects created for the health and economy of the population worldwide made researchers from the most diverse areas of knowledge turn their resources into projects inside the theme. The present work presents and apply a framework for uncertainty quantification in epidemiological models. This is based on use global sensitivity analysis by Polynomial Chaos Expansion-based Sobol indices, combined with the Maximum Entropy Principle. The first allows to identify the most relevant input parameters, while the second one orients the construction of least biased distributions for those inputs. Then, a Monte Carlo simulation is executed to analyze the outcome stochastic process obtained through the model. The framework was applied in the epidemiological scenarios of Zika virus in Brazil and COVID-19 in Rio de Janeiro city, allowing to extract some important statistics about each outbreak. A compartmental model is employed in the first scenario, while the multi-waves dynamics of the second scenario is described by a Beta logistic growth model. Before riding the robustness study, calibration results are performed to put the quantities of interest obtained from theses models in a shape closer to the real data. Additional discussions are made about how to use sensitivity analysis results to update the knowledge about the parameters, and guide model selection
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spelling Cunha Junior, Americo Barbosa daCoelho, Flávio CodeçoArenas, Zochil GonzálezRochinha, Fernando AlvesRizzi, Rogério Luishttp://lattes.cnpq.br/1995185025141214Caldas, Michel Antonio Tosinmichel.tosin@uerj.br2023-09-21T13:52:43Z2021-08-06CALDAS, Michel Antonio Tosin. Modeling and uncertainty quantification in the nonlinear dynamics of epidemiological phenomena: application to Zika virus and COVID-19 outbreaks. 2021. 118 f. Dissertação (Mestrado em Ciências Computacionais) - Instituto de Matemática e Estatística, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2021.http://www.bdtd.uerj.br/handle/1/20326Outbreaks due infectious diseases has been drawing attention of the scientific community in the last few years. The recognition of the aggressive effects created for the health and economy of the population worldwide made researchers from the most diverse areas of knowledge turn their resources into projects inside the theme. The present work presents and apply a framework for uncertainty quantification in epidemiological models. This is based on use global sensitivity analysis by Polynomial Chaos Expansion-based Sobol indices, combined with the Maximum Entropy Principle. The first allows to identify the most relevant input parameters, while the second one orients the construction of least biased distributions for those inputs. Then, a Monte Carlo simulation is executed to analyze the outcome stochastic process obtained through the model. The framework was applied in the epidemiological scenarios of Zika virus in Brazil and COVID-19 in Rio de Janeiro city, allowing to extract some important statistics about each outbreak. A compartmental model is employed in the first scenario, while the multi-waves dynamics of the second scenario is described by a Beta logistic growth model. Before riding the robustness study, calibration results are performed to put the quantities of interest obtained from theses models in a shape closer to the real data. Additional discussions are made about how to use sensitivity analysis results to update the knowledge about the parameters, and guide model selectionSurtos por doenças infecciosas têm tomado atenção da comunidade científica geral nos últimos anos. O reconhecimento dos agressivos efeitos gerados para a saúde e economia das populações ao redor do mundo, fez com que pesquisadores das mais diversas áreas do conhecimento voltassem seus recursos para projetos nesse tema. O presente trabalho apresenta e aplica um framework para quantificação de incertezas em modelos epidemiológicos. Este é baseado em usar análise de sensibilidade global por índicas de Sobol baseados em Expansão em Polinômios Caos, combinado com o Princípio do Máximo de Entropia. O primeiro permite identificar os parâmetros de entrada mais relevantes, enquanto que o segundo orienta a construção de distribuições menos enviesadas para essas entradas. Assim, uma simulação de Monte Carlo é executada para analisar o processo estocástico de saída obtido através do modelo. O framework foi aplicado nos cenários epidemiológicos de Zika vírus no Brasil e de COVID-19 no município do Rio de Janeiro, permitindo extrair algumas estatísticas importantes sobre cada surto. Um modelo comportamental é empregado no primeiro cenário, enquanto a dinâmica multi ondas do segundo cenário é descrita por um modelo de crescimento Beta logístico. Antes de conduzir os estudos de robustez, resultados de calibração são incluídos para por as quantidades de interesse obtidas por esses modelos numa forma mais próxima dos dados reais. Discussões adicionais são feitas sobre como utilizar resultados de análise de sensibilidade para atualizar o conhecimento sobre os parâmetros, e guiar seleção de modelosSubmitted by Bárbara CTC/A (babalusotnas@gmail.com) on 2023-09-21T13:52:43Z No. of bitstreams: 1 Dissertação - Michel Antonio Tosin Caldas - 2021 -Completa.pdf.pdf: 4237109 bytes, checksum: 528e4586159bb27d0de9c93eeda06d5b (MD5)Made available in DSpace on 2023-09-21T13:52:43Z (GMT). No. of bitstreams: 1 Dissertação - Michel Antonio Tosin Caldas - 2021 -Completa.pdf.pdf: 4237109 bytes, checksum: 528e4586159bb27d0de9c93eeda06d5b (MD5) Previous issue date: 2021-08-06Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro - FAPERJapplication/pdfporUniversidade do Estado do Rio de JaneiroPrograma de Pós-Graduação em Ciências ComputacionaisUERJBrasilCentro de Tecnologia e Ciências::Instituto de Matemática e EstatísticaNonlinear dynamicsModel calibrationUncertainty quantificationEpidemiologia - Modelos matemáticosEpidemiologia - Modelos estatísticosZika VirusCOVID-19 (Doença)Epidemiological modelingGlobal sensitivity analysisModelagem epidemiológicaDinâmica não o linearCalibração de modelosAnálise de sensibilidade globalQuantificação de incertezasCIENCIAS EXATAS E DA TERRA::MATEMATICAModeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaksModelagem e quantificação das incertezas na dinâmica não-linear de fenômenos epidemiológicos: aplicação em surtos de Zika vírus e COVID-19info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UERJinstname:Universidade do Estado do Rio de Janeiro (UERJ)instacron:UERJORIGINALDissertação - Michel Antonio Tosin Caldas - 2021 -Completa.pdfDissertação - Michel Antonio Tosin Caldas - 2021 -Completa.pdfapplication/pdf4237109http://www.bdtd.uerj.br/bitstream/1/20326/2/Disserta%C3%A7%C3%A3o+-+Michel+Antonio+Tosin+Caldas+-+2021+-Completa.pdf528e4586159bb27d0de9c93eeda06d5bMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82123http://www.bdtd.uerj.br/bitstream/1/20326/1/license.txte5502652da718045d7fcd832b79fca29MD511/203262024-02-27 14:34:50.173oai:www.bdtd.uerj.br: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.bdtd.uerj.br/PUBhttps://www.bdtd.uerj.br:8443/oai/requestbdtd.suporte@uerj.bropendoar:29032024-02-27T17:34:50Biblioteca Digital de Teses e Dissertações da UERJ - Universidade do Estado do Rio de Janeiro (UERJ)false
dc.title.por.fl_str_mv Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
dc.title.alternative.por.fl_str_mv Modelagem e quantificação das incertezas na dinâmica não-linear de fenômenos epidemiológicos: aplicação em surtos de Zika vírus e COVID-19
title Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
spellingShingle Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
Caldas, Michel Antonio Tosin
Nonlinear dynamics
Model calibration
Uncertainty quantification
Epidemiologia - Modelos matemáticos
Epidemiologia - Modelos estatísticos
Zika Virus
COVID-19 (Doença)
Epidemiological modeling
Global sensitivity analysis
Modelagem epidemiológica
Dinâmica não o linear
Calibração de modelos
Análise de sensibilidade global
Quantificação de incertezas
CIENCIAS EXATAS E DA TERRA::MATEMATICA
title_short Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
title_full Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
title_fullStr Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
title_full_unstemmed Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
title_sort Modeling and uncertainty quanti cation in the nonlinear dynamics of epidemiological phenomena: Application to Zika virus and COVID-19 outbreaks
author Caldas, Michel Antonio Tosin
author_facet Caldas, Michel Antonio Tosin
michel.tosin@uerj.br
author_role author
author2 michel.tosin@uerj.br
author2_role author
dc.contributor.advisor1.fl_str_mv Cunha Junior, Americo Barbosa da
dc.contributor.advisor-co1.fl_str_mv Coelho, Flávio Codeço
dc.contributor.referee1.fl_str_mv Arenas, Zochil González
dc.contributor.referee2.fl_str_mv Rochinha, Fernando Alves
dc.contributor.referee3.fl_str_mv Rizzi, Rogério Luis
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1995185025141214
dc.contributor.author.fl_str_mv Caldas, Michel Antonio Tosin
michel.tosin@uerj.br
contributor_str_mv Cunha Junior, Americo Barbosa da
Coelho, Flávio Codeço
Arenas, Zochil González
Rochinha, Fernando Alves
Rizzi, Rogério Luis
dc.subject.eng.fl_str_mv Nonlinear dynamics
Model calibration
Uncertainty quantification
topic Nonlinear dynamics
Model calibration
Uncertainty quantification
Epidemiologia - Modelos matemáticos
Epidemiologia - Modelos estatísticos
Zika Virus
COVID-19 (Doença)
Epidemiological modeling
Global sensitivity analysis
Modelagem epidemiológica
Dinâmica não o linear
Calibração de modelos
Análise de sensibilidade global
Quantificação de incertezas
CIENCIAS EXATAS E DA TERRA::MATEMATICA
dc.subject.por.fl_str_mv Epidemiologia - Modelos matemáticos
Epidemiologia - Modelos estatísticos
Zika Virus
COVID-19 (Doença)
Epidemiological modeling
Global sensitivity analysis
Modelagem epidemiológica
Dinâmica não o linear
Calibração de modelos
Análise de sensibilidade global
Quantificação de incertezas
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::MATEMATICA
description Outbreaks due infectious diseases has been drawing attention of the scientific community in the last few years. The recognition of the aggressive effects created for the health and economy of the population worldwide made researchers from the most diverse areas of knowledge turn their resources into projects inside the theme. The present work presents and apply a framework for uncertainty quantification in epidemiological models. This is based on use global sensitivity analysis by Polynomial Chaos Expansion-based Sobol indices, combined with the Maximum Entropy Principle. The first allows to identify the most relevant input parameters, while the second one orients the construction of least biased distributions for those inputs. Then, a Monte Carlo simulation is executed to analyze the outcome stochastic process obtained through the model. The framework was applied in the epidemiological scenarios of Zika virus in Brazil and COVID-19 in Rio de Janeiro city, allowing to extract some important statistics about each outbreak. A compartmental model is employed in the first scenario, while the multi-waves dynamics of the second scenario is described by a Beta logistic growth model. Before riding the robustness study, calibration results are performed to put the quantities of interest obtained from theses models in a shape closer to the real data. Additional discussions are made about how to use sensitivity analysis results to update the knowledge about the parameters, and guide model selection
publishDate 2021
dc.date.issued.fl_str_mv 2021-08-06
dc.date.accessioned.fl_str_mv 2023-09-21T13:52:43Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv CALDAS, Michel Antonio Tosin. Modeling and uncertainty quantification in the nonlinear dynamics of epidemiological phenomena: application to Zika virus and COVID-19 outbreaks. 2021. 118 f. Dissertação (Mestrado em Ciências Computacionais) - Instituto de Matemática e Estatística, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2021.
dc.identifier.uri.fl_str_mv http://www.bdtd.uerj.br/handle/1/20326
identifier_str_mv CALDAS, Michel Antonio Tosin. Modeling and uncertainty quantification in the nonlinear dynamics of epidemiological phenomena: application to Zika virus and COVID-19 outbreaks. 2021. 118 f. Dissertação (Mestrado em Ciências Computacionais) - Instituto de Matemática e Estatística, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2021.
url http://www.bdtd.uerj.br/handle/1/20326
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language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade do Estado do Rio de Janeiro
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Ciências Computacionais
dc.publisher.initials.fl_str_mv UERJ
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Centro de Tecnologia e Ciências::Instituto de Matemática e Estatística
publisher.none.fl_str_mv Universidade do Estado do Rio de Janeiro
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da UERJ
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