Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens

Detalhes bibliográficos
Autor(a) principal: Abdala, Bianca Barbosa
Data de Publicação: 2018
Outros Autores: abdala.bianca@gmail.com
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UERJ
Texto Completo: http://www.bdtd.uerj.br/handle/1/20277
Resumo: Intellectual disability (ID) is a complex condition, with a world-wide prevalence of 1-3%. Although many etiological factors associated with ID remain unclear, about 25-50% of the cases are due to genetic contributions. In this context, copy number variation (CNV) at Xq28 encompassing methyl-CpG-binding protein 2 gene (MECP2) is one of the most common cause of severe ID in males. MECP2 is highly expressed in neurons and encodes a chromatin-associated protein, which functions as a transcriptional regulator. Therefore, copy number variation in MECP2 can affect the expression of different genes in brain, leading to abnormal neurological phenotypes. In this view, in this study we conducted a CNV screening of MECP2 gene in a large cohort of 920 unrelated males with idiopathic ID. Genomic DNA was isolated from peripheral blood and MECP2 target sequences were amplified by TaqMan copy number assay®. A total of three individuals (0,33%) exhibiting duplications at MECP2 locus were detected. The duplications ranged from 420 Kb to 2 Mb and delimitation of small region of overlap demonstrated the presence of MECP2 and other seven genes (IRAK1, OPN1LM, TEX28, OPN1MW, TKTL1, FLNA and EMD). Subsequently, the segregation analysis of the duplications demonstrated that the rearrangement is de novo in the proband 565, whereas in 4219 patient the duplication was inherited from his mother, which presented an extreme skewed of X-inactivation pattern. Expression analysis in these two patients demonstrated that patient 565 has an increased expression of MECP2 gene, whereas patient 4219 has normal expression levels of this gene. Previous studies conducted in North American and European populations indicate a prevalence of 1-2% of MECP2 duplications among males with ID. Nonetheless, corroborating our results, large cohorts analysis had a lower detection rate of 0.3-0.4%. In addition, such studies indicated that duplications involving MECP2 lead to increased expression of this gene. However, considering that apparently normal expression levels of MECP2 were observed in patient 4219, our data suggests that duplications involving MECP2 gene may lead to the development of the phenotypes through other molecular mechanisms in addition to gene dosage. Alternatively, other genes involved in the rearrangements may contribute to cognitive impairments. Taken together, these data suggest that MECP2 duplications represent an important cause of idiopathic ID in males and confirms that TaqMan copy number assay® is a sensitive method to assess these duplications.
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spelling Santos-Rebouças, Cíntia Barroshttp://lattes.cnpq.br/5415426502606671Pimentel, Márcia Mattos Gonçalveshttp://lattes.cnpq.br/9409055728849608Leonor Gusmão http://lattes.cnpq.br/2495323064167358 4790298272Simão, Tatiana de Almeidahttp://lattes.cnpq.br/4257729756468950Vargas, Fernando Reglahttp://lattes.cnpq.br/1796505221055428http://lattes.cnpq.br/1446808493153778Abdala, Bianca Barbosaabdala.bianca@gmail.com2023-09-06T16:12:33Z2018-02-27ABDALA, Bianca Barbosa. Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens. 2018. 100 f. Dissertação (Mestrado em Biociências) – Instituto de Biologia Roberto Alcântara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2018.http://www.bdtd.uerj.br/handle/1/20277Intellectual disability (ID) is a complex condition, with a world-wide prevalence of 1-3%. Although many etiological factors associated with ID remain unclear, about 25-50% of the cases are due to genetic contributions. In this context, copy number variation (CNV) at Xq28 encompassing methyl-CpG-binding protein 2 gene (MECP2) is one of the most common cause of severe ID in males. MECP2 is highly expressed in neurons and encodes a chromatin-associated protein, which functions as a transcriptional regulator. Therefore, copy number variation in MECP2 can affect the expression of different genes in brain, leading to abnormal neurological phenotypes. In this view, in this study we conducted a CNV screening of MECP2 gene in a large cohort of 920 unrelated males with idiopathic ID. Genomic DNA was isolated from peripheral blood and MECP2 target sequences were amplified by TaqMan copy number assay®. A total of three individuals (0,33%) exhibiting duplications at MECP2 locus were detected. The duplications ranged from 420 Kb to 2 Mb and delimitation of small region of overlap demonstrated the presence of MECP2 and other seven genes (IRAK1, OPN1LM, TEX28, OPN1MW, TKTL1, FLNA and EMD). Subsequently, the segregation analysis of the duplications demonstrated that the rearrangement is de novo in the proband 565, whereas in 4219 patient the duplication was inherited from his mother, which presented an extreme skewed of X-inactivation pattern. Expression analysis in these two patients demonstrated that patient 565 has an increased expression of MECP2 gene, whereas patient 4219 has normal expression levels of this gene. Previous studies conducted in North American and European populations indicate a prevalence of 1-2% of MECP2 duplications among males with ID. Nonetheless, corroborating our results, large cohorts analysis had a lower detection rate of 0.3-0.4%. In addition, such studies indicated that duplications involving MECP2 lead to increased expression of this gene. However, considering that apparently normal expression levels of MECP2 were observed in patient 4219, our data suggests that duplications involving MECP2 gene may lead to the development of the phenotypes through other molecular mechanisms in addition to gene dosage. Alternatively, other genes involved in the rearrangements may contribute to cognitive impairments. Taken together, these data suggest that MECP2 duplications represent an important cause of idiopathic ID in males and confirms that TaqMan copy number assay® is a sensitive method to assess these duplications.A deficiência intelectual (DI) é uma condição complexa, com uma prevalência de 1-3%. Embora muitos fatores etiológicos associados à DI ainda sejam desconhecidos, cerca de 25-50% dos casos ocorrem devido a contribuições genéticas. Assim sendo, variações do número de cópias (VNC) em Xq28, englobando o gene methyl-CpG-binding protein 2 (MECP2) são uma das causas mais comuns de DI severa em homens. O gene MECP2 é altamente expresso nos neurônios e codifica uma proteína associada à cromatina, atuando como um regulador transcricional. Sendo assim, VNCs no MECP2 podem afetar a expressão de diferentes genes no cérebro, levando a fenótipos neurológicos anormais. Neste sentido, neste estudo foi conduzido o rastreamento de VNCs no gene MECP2 em uma amostra ampla de 920 indivíduos não aparentados portadores de DI idiopática. O DNA genômico foi isolado do sangue periférico e as sequências alvo no gene MECP2 foram amplificadas pelo sistema de TaqMan copy number assay®. Ao todo, três indivíduos (0,33%) exibindo duplicações envolvendo o gene MECP2 foram detectados. As duplicações variaram de 420 Kb a 2 Mb e a delimitação da região de sobreposição mínima demonstrou a presença de sete genes, além do MECP2 (IRAK1, OPN1LM, TEX28, OPN1MW, TKTL1, FLNA e EMD). Posteriormente, a análise de segregação das duplicações demonstrou que o rearranjo é de novo no probando 565, enquanto que no paciente 4219 a duplicação foi herdada da mãe, a qual apresentou desvio extremo de inativação do cromossomo X. A avaliação da expressão nesses dois pacientes demostrou que o paciente 565 apresentou aumento de expressão do gene MECP2, enquanto que o paciente 4219 exibiu níveis normais de expressão desse gene. Estudos anteriores realizados em populações norte-americanas e européias indicaram a prevalência de 1-2% de duplicações no gene MECP2 em homens portadores de DI. No entanto, corroborando nossos resultados, análises em amostras amplas apresentaram uma taxa de detecção de 0,3-0,4%. Além disso, tais estudos mostraram que duplicações envolvendo o gene MECP2 levaram ao aumento de expressão desse gene. Todavia, na análise funcional do paciente 4219 não foi verificado, aparentemente, um aumento de expressão, sugerindo que as duplicações envolvendo o gene MECP2 podem levar ao desenvolvimento dos fenótipos através de outros mecanismos moleculares, além de dosagem gênica. Alternativamente, outros genes envolvidos nos rearranjos podem ter uma contribuição no comprometimento cognitivo. Em conjunto, esses dados sugerem que as duplicações no gene MECP2 representam uma causa importante da DI idiopática em homens e ratificam que o sistema TaqMan copy number assay® é um método sensível para avaliar essas duplicações.Submitted by Heloísa CB/A (helobdtd@gmail.com) on 2023-09-06T16:12:33Z No. of bitstreams: 1 Dissertação - Bianca Barbosa Abdala - 2018 - Completa.pdf: 5575840 bytes, checksum: 12e97718f7a5407ead0f1a4cc7b7fb48 (MD5)Made available in DSpace on 2023-09-06T16:12:33Z (GMT). No. of bitstreams: 1 Dissertação - Bianca Barbosa Abdala - 2018 - Completa.pdf: 5575840 bytes, checksum: 12e97718f7a5407ead0f1a4cc7b7fb48 (MD5) Previous issue date: 2018-02-27Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESapplication/pdfporUniversidade do Estado do Rio de JaneiroPrograma de Pós-Graduação em BiociênciasUERJBrasilCentro Biomédico::Instituto de Biologia Roberto Alcantara GomesIntellectual disabilityDuplicationMECP2CNV screeningDeficiência IntelectualDuplicaçãoMECP2Rastreamento de VNCsCIENCIAS BIOLOGICAS::GENETICAVariação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homensCopy number variation in MECP2 gene and its relation with intelectual disability in malesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UERJinstname:Universidade do Estado do Rio de Janeiro (UERJ)instacron:UERJORIGINALDissertação - Bianca Barbosa Abdala - 2018 - Completa.pdfDissertação - Bianca Barbosa Abdala - 2018 - Completa.pdfapplication/pdf5575840http://www.bdtd.uerj.br/bitstream/1/20277/2/Disserta%C3%A7%C3%A3o+-+Bianca+Barbosa++Abdala+-+2018+-+Completa.pdf12e97718f7a5407ead0f1a4cc7b7fb48MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82123http://www.bdtd.uerj.br/bitstream/1/20277/1/license.txte5502652da718045d7fcd832b79fca29MD511/202772024-02-26 11:39:25.233oai:www.bdtd.uerj.br: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.bdtd.uerj.br/PUBhttps://www.bdtd.uerj.br:8443/oai/requestbdtd.suporte@uerj.bropendoar:29032024-02-26T14:39:25Biblioteca Digital de Teses e Dissertações da UERJ - Universidade do Estado do Rio de Janeiro (UERJ)false
dc.title.por.fl_str_mv Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
dc.title.alternative.eng.fl_str_mv Copy number variation in MECP2 gene and its relation with intelectual disability in males
title Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
spellingShingle Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
Abdala, Bianca Barbosa
Intellectual disability
Duplication
MECP2
CNV screening
Deficiência Intelectual
Duplicação
MECP2
Rastreamento de VNCs
CIENCIAS BIOLOGICAS::GENETICA
title_short Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
title_full Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
title_fullStr Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
title_full_unstemmed Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
title_sort Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens
author Abdala, Bianca Barbosa
author_facet Abdala, Bianca Barbosa
abdala.bianca@gmail.com
author_role author
author2 abdala.bianca@gmail.com
author2_role author
dc.contributor.advisor1.fl_str_mv Santos-Rebouças, Cíntia Barros
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/5415426502606671
dc.contributor.advisor-co1.fl_str_mv Pimentel, Márcia Mattos Gonçalves
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/9409055728849608
dc.contributor.referee1Lattes.fl_str_mv Leonor Gusmão http://lattes.cnpq.br/2495323064167358 4790298272
dc.contributor.referee2.fl_str_mv Simão, Tatiana de Almeida
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/4257729756468950
dc.contributor.referee3.fl_str_mv Vargas, Fernando Regla
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/1796505221055428
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1446808493153778
dc.contributor.author.fl_str_mv Abdala, Bianca Barbosa
abdala.bianca@gmail.com
contributor_str_mv Santos-Rebouças, Cíntia Barros
Pimentel, Márcia Mattos Gonçalves
Simão, Tatiana de Almeida
Vargas, Fernando Regla
dc.subject.eng.fl_str_mv Intellectual disability
Duplication
MECP2
CNV screening
topic Intellectual disability
Duplication
MECP2
CNV screening
Deficiência Intelectual
Duplicação
MECP2
Rastreamento de VNCs
CIENCIAS BIOLOGICAS::GENETICA
dc.subject.por.fl_str_mv Deficiência Intelectual
Duplicação
MECP2
Rastreamento de VNCs
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::GENETICA
description Intellectual disability (ID) is a complex condition, with a world-wide prevalence of 1-3%. Although many etiological factors associated with ID remain unclear, about 25-50% of the cases are due to genetic contributions. In this context, copy number variation (CNV) at Xq28 encompassing methyl-CpG-binding protein 2 gene (MECP2) is one of the most common cause of severe ID in males. MECP2 is highly expressed in neurons and encodes a chromatin-associated protein, which functions as a transcriptional regulator. Therefore, copy number variation in MECP2 can affect the expression of different genes in brain, leading to abnormal neurological phenotypes. In this view, in this study we conducted a CNV screening of MECP2 gene in a large cohort of 920 unrelated males with idiopathic ID. Genomic DNA was isolated from peripheral blood and MECP2 target sequences were amplified by TaqMan copy number assay®. A total of three individuals (0,33%) exhibiting duplications at MECP2 locus were detected. The duplications ranged from 420 Kb to 2 Mb and delimitation of small region of overlap demonstrated the presence of MECP2 and other seven genes (IRAK1, OPN1LM, TEX28, OPN1MW, TKTL1, FLNA and EMD). Subsequently, the segregation analysis of the duplications demonstrated that the rearrangement is de novo in the proband 565, whereas in 4219 patient the duplication was inherited from his mother, which presented an extreme skewed of X-inactivation pattern. Expression analysis in these two patients demonstrated that patient 565 has an increased expression of MECP2 gene, whereas patient 4219 has normal expression levels of this gene. Previous studies conducted in North American and European populations indicate a prevalence of 1-2% of MECP2 duplications among males with ID. Nonetheless, corroborating our results, large cohorts analysis had a lower detection rate of 0.3-0.4%. In addition, such studies indicated that duplications involving MECP2 lead to increased expression of this gene. However, considering that apparently normal expression levels of MECP2 were observed in patient 4219, our data suggests that duplications involving MECP2 gene may lead to the development of the phenotypes through other molecular mechanisms in addition to gene dosage. Alternatively, other genes involved in the rearrangements may contribute to cognitive impairments. Taken together, these data suggest that MECP2 duplications represent an important cause of idiopathic ID in males and confirms that TaqMan copy number assay® is a sensitive method to assess these duplications.
publishDate 2018
dc.date.issued.fl_str_mv 2018-02-27
dc.date.accessioned.fl_str_mv 2023-09-06T16:12:33Z
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dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv ABDALA, Bianca Barbosa. Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens. 2018. 100 f. Dissertação (Mestrado em Biociências) – Instituto de Biologia Roberto Alcântara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2018.
dc.identifier.uri.fl_str_mv http://www.bdtd.uerj.br/handle/1/20277
identifier_str_mv ABDALA, Bianca Barbosa. Variação no número de cópias no gene MECP2 e sua relação com a deficiência intelectual em homens. 2018. 100 f. Dissertação (Mestrado em Biociências) – Instituto de Biologia Roberto Alcântara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2018.
url http://www.bdtd.uerj.br/handle/1/20277
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dc.publisher.none.fl_str_mv Universidade do Estado do Rio de Janeiro
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Biociências
dc.publisher.initials.fl_str_mv UERJ
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Centro Biomédico::Instituto de Biologia Roberto Alcantara Gomes
publisher.none.fl_str_mv Universidade do Estado do Rio de Janeiro
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