Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical

Detalhes bibliográficos
Autor(a) principal: Cavaleiro, Nathalia Pereira
Data de Publicação: 2013
Tipo de documento: Tese
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UERJ
Texto Completo: http://www.bdtd.uerj.br/handle/1/16145
Resumo: Crassostrea (Sacco, 1897) is the most important genus of cultivated oysters in the world and consisting of 34 species distributed by tropical and temperate regions of the globe. C. gasar and C. rhizophorae are the two native species which have wide distribution along the entire Brazilian coast up to the Caribbean. C. gasar also occurs on coast of Africa. Despite its extensive distribution and abundant availability, cultivation of those oysters in Brazil is incipient, and the correct delimitation of the existing stocks is still uncertain. The successful development of malacoculture which is recommended internationally as an environmentally sustainable form of aquaculture depends on the resolution of these issues. Thus, in order to genetically determinate their stocks in the Atlantic and to estimate their demographic history, two different molecular markers were employed: sequences of the mitochondrial DNA control region and species-specific microsatellite loci, developed in the present study. We have sequenced a fragment of the mitochondrial control region from a total of 930 individuals of C. gasar and C. rhizophorae collected in 32 localities including the Caribbean, French Guyana, Brazilian coast and Africa. We have also genotyped 1178 individuals of both species with 9 and 11 loci of microsatellites for C. gasar and C. rhizophorae, respectively. Genetic data were analyzed with different approaches (fixation (FST) and differentiation (Jost D) indices, analysis of molecular variance (AMOVA), spatial analysis of molecular variance (SAMOVA), Bayesian Skyline Plots (BSP), factorial correspondence analysis (AFC) and Bayesian attribution analysis (STRUCTURE)). The results indicated a general structure pattern, where two different stocks were detected for both species: north and south groups, where Rio de Janeiro would be the limited region between them. Higher values of fixation indices were found for C. gasar, indicating that this species would be more structured than C. rhizophorae. Demographic analyses showed a probable expansion of populations during the last glacial period and a probable American origin of African populations. All results suggested the existence of a barrier next to Rio de Janeiro, which could be Vitoria-Trindade chain and the upwelling in the region of Cabo Frio (RJ). These results will be useful to establish criteria for the selection of seeds for cultivation along the Brazilian coast which will allow proper management of stocks of oysters preventing its disappearance as in other reefs around the world.
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spelling Cava, Antonio Mateo Solehttp://lattes.cnpq.br/1863833156194815Albano, Rodolpho Mattoshttp://lattes.cnpq.br/1268859650338952Hajdu, Gisele Lôbohttp://lattes.cnpq.br/1346430944942436Paiva, Paulo Cesar dehttp://lattes.cnpq.br/1226350276509077http://lattes.cnpq.br/3792492020965561Cavaleiro, Nathalia Pereira2021-04-26T01:10:56Z2013-10-312013-03-28CAVALEIRO, Nathalia Pereira. Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical. 2013. 183 f. Tese (Doutorado em Biociências) - Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2013.http://www.bdtd.uerj.br/handle/1/16145Crassostrea (Sacco, 1897) is the most important genus of cultivated oysters in the world and consisting of 34 species distributed by tropical and temperate regions of the globe. C. gasar and C. rhizophorae are the two native species which have wide distribution along the entire Brazilian coast up to the Caribbean. C. gasar also occurs on coast of Africa. Despite its extensive distribution and abundant availability, cultivation of those oysters in Brazil is incipient, and the correct delimitation of the existing stocks is still uncertain. The successful development of malacoculture which is recommended internationally as an environmentally sustainable form of aquaculture depends on the resolution of these issues. Thus, in order to genetically determinate their stocks in the Atlantic and to estimate their demographic history, two different molecular markers were employed: sequences of the mitochondrial DNA control region and species-specific microsatellite loci, developed in the present study. We have sequenced a fragment of the mitochondrial control region from a total of 930 individuals of C. gasar and C. rhizophorae collected in 32 localities including the Caribbean, French Guyana, Brazilian coast and Africa. We have also genotyped 1178 individuals of both species with 9 and 11 loci of microsatellites for C. gasar and C. rhizophorae, respectively. Genetic data were analyzed with different approaches (fixation (FST) and differentiation (Jost D) indices, analysis of molecular variance (AMOVA), spatial analysis of molecular variance (SAMOVA), Bayesian Skyline Plots (BSP), factorial correspondence analysis (AFC) and Bayesian attribution analysis (STRUCTURE)). The results indicated a general structure pattern, where two different stocks were detected for both species: north and south groups, where Rio de Janeiro would be the limited region between them. Higher values of fixation indices were found for C. gasar, indicating that this species would be more structured than C. rhizophorae. Demographic analyses showed a probable expansion of populations during the last glacial period and a probable American origin of African populations. All results suggested the existence of a barrier next to Rio de Janeiro, which could be Vitoria-Trindade chain and the upwelling in the region of Cabo Frio (RJ). These results will be useful to establish criteria for the selection of seeds for cultivation along the Brazilian coast which will allow proper management of stocks of oysters preventing its disappearance as in other reefs around the world.Crassostrea (Sacco, 1897) é o gênero mais importante do mundo de ostras de cultivo e consiste de 34 espécies distribuídas pelas regiões tropicais e temperadas do globo. C. gasar e C. rhizophorae são as duas espécies nativas que estão distribuídas ao longo de toda a costa do Brasil até o Caribe. C. gasar também ocorre na costa da Africa. Ainda que sua distribuição seja extensa e com disponibilidade abundante, o cultivo de ostras nativas no Brasil ainda é incipiente e a delimitação correta dos estoques mantém-se incerta. O sucesso do desenvolvimento da malacocultura, que é recomendada internacionalmente como forma sustentável de aquicultura, depende da resolução desses problemas. Assim, com o objetivo de determinar geneticamente seus estoques no Atlântico como também estimar sua história demográfica, dois diferentes marcadores moleculares foram empregados: sequências de DNA da região controle mitocondrial e loci de microssatélites espécie-especifícos, desenvolvidos no presente estudo. Foram sequenciados fragmentos da região controle de um total de 930 indivíduos de C. gasar e C. rhizophorae coletados em 32 localidades que incluíram o Caribe, a Guiana Francesa, a costa brasileira e a África. Também foram realizadas genotipagens de 1178 indivíduos, e ambas as espécies, com 9 e 11 loci de microssatélites para C. gasar e C. rhizophorae, respectivamente. Os dados genéticos foram analisados através de diferentes abordagens (índices de estruturação (FST) e de (Jost D), análise molecular de variância (AMOVA), análise espacial molecular de variância (SAMOVA), Bayesian Skyline Plots (BSP), análise fatorial de correspondência (AFC) e análise de atribuição Bayesiana (STRUCTURE)). Os resultados indicaram um padrão geral de estruturação, onde dois diferentes estoques foram detectados para ambas as espécies: grupos do norte e do sul, onde o Rio de Janeiro seria a região limitante entre os dois estoques. Os maiores valores dos índices de estruturação foram encontrados para C. gasar, indicando que esta espécie estaria mais estruturada do que C. rhizophorae. As análises demográficas indicaram uma provável expansão das populações durante o ultimo período glacial e uma possível origem americana das populações africanas. Todos os resultados sugeriram a existência de uma barreira geográfica próxima ao Rio de Janeiro, que poderia ser a cadeia de Vitória-Trindade e o fenômeno de ressurgência que ocorre em Cabo Frio (RJ). Esses resultados serão de grande utilidade para estabelecer critérios para seleção de sementes para cultivo ao longo da costa do Brasil que permitirá o manejo adequado dos estoques ostreícolas, prevenindo seu desaparecimento como já ocorrido em outros recifes no mundo.Submitted by Boris INFORMAT (boris@uerj.br) on 2021-04-26T01:10:56Z No. of bitstreams: 1 TESE Nathalia Cavaleiro 2013 versao final final.pdf: 6040191 bytes, checksum: 38826407ef29a7a6530b21c603972241 (MD5)Made available in DSpace on 2021-04-26T01:10:56Z (GMT). No. of bitstreams: 1 TESE Nathalia Cavaleiro 2013 versao final final.pdf: 6040191 bytes, checksum: 38826407ef29a7a6530b21c603972241 (MD5) Previous issue date: 2013-03-28Coordenação de Aperfeiçoamento de Pessoal de Nível Superiorapplication/pdfporUniversidade do Estado do Rio de JaneiroPrograma de Pós-Graduação em BiociênciasUERJBRCentro Biomédico::Instituto de Biologia Roberto Alcantara GomesCrassostreaOystersPopulation geneticsMicrosatellitesControl regionCrassostreaOstrasMicrossatélitesRegião controleCrassostrea rhizophoraeMicrossatélitesOstras - CriaçãoOstras - CriaçãoCNPQ::CIENCIAS BIOLOGICAS::GENETICAEcologia molecular de ostras (Crassostrea spp.) do Atlântico TropicalMolecular ecology of oysters (Crassostrea spp.) from Tropical Atlanticinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UERJinstname:Universidade do Estado do Rio de Janeiro (UERJ)instacron:UERJORIGINALTESE Nathalia Cavaleiro 2013 versao final final.pdfapplication/pdf6040191http://www.bdtd.uerj.br/bitstream/1/16145/1/TESE+Nathalia+Cavaleiro+2013+versao+final+final.pdf38826407ef29a7a6530b21c603972241MD511/161452024-02-26 11:24:58.376oai:www.bdtd.uerj.br:1/16145Biblioteca Digital de Teses e Dissertaçõeshttp://www.bdtd.uerj.br/PUBhttps://www.bdtd.uerj.br:8443/oai/requestbdtd.suporte@uerj.bropendoar:29032024-02-26T14:24:58Biblioteca Digital de Teses e Dissertações da UERJ - Universidade do Estado do Rio de Janeiro (UERJ)false
dc.title.por.fl_str_mv Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
dc.title.alternative.eng.fl_str_mv Molecular ecology of oysters (Crassostrea spp.) from Tropical Atlantic
title Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
spellingShingle Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
Cavaleiro, Nathalia Pereira
Crassostrea
Oysters
Population genetics
Microsatellites
Control region
Crassostrea
Ostras
Microssatélites
Região controle
Crassostrea rhizophorae
Microssatélites
Ostras - Criação
Ostras - Criação
CNPQ::CIENCIAS BIOLOGICAS::GENETICA
title_short Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
title_full Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
title_fullStr Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
title_full_unstemmed Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
title_sort Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical
author Cavaleiro, Nathalia Pereira
author_facet Cavaleiro, Nathalia Pereira
author_role author
dc.contributor.advisor1.fl_str_mv Cava, Antonio Mateo Sole
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/1863833156194815
dc.contributor.referee1.fl_str_mv Albano, Rodolpho Mattos
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/1268859650338952
dc.contributor.referee2.fl_str_mv Hajdu, Gisele Lôbo
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/1346430944942436
dc.contributor.referee3.fl_str_mv Paiva, Paulo Cesar de
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/1226350276509077
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/3792492020965561
dc.contributor.author.fl_str_mv Cavaleiro, Nathalia Pereira
contributor_str_mv Cava, Antonio Mateo Sole
Albano, Rodolpho Mattos
Hajdu, Gisele Lôbo
Paiva, Paulo Cesar de
dc.subject.eng.fl_str_mv Crassostrea
Oysters
Population genetics
Microsatellites
Control region
topic Crassostrea
Oysters
Population genetics
Microsatellites
Control region
Crassostrea
Ostras
Microssatélites
Região controle
Crassostrea rhizophorae
Microssatélites
Ostras - Criação
Ostras - Criação
CNPQ::CIENCIAS BIOLOGICAS::GENETICA
dc.subject.por.fl_str_mv Crassostrea
Ostras
Microssatélites
Região controle
Crassostrea rhizophorae
Microssatélites
Ostras - Criação
Ostras - Criação
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS BIOLOGICAS::GENETICA
description Crassostrea (Sacco, 1897) is the most important genus of cultivated oysters in the world and consisting of 34 species distributed by tropical and temperate regions of the globe. C. gasar and C. rhizophorae are the two native species which have wide distribution along the entire Brazilian coast up to the Caribbean. C. gasar also occurs on coast of Africa. Despite its extensive distribution and abundant availability, cultivation of those oysters in Brazil is incipient, and the correct delimitation of the existing stocks is still uncertain. The successful development of malacoculture which is recommended internationally as an environmentally sustainable form of aquaculture depends on the resolution of these issues. Thus, in order to genetically determinate their stocks in the Atlantic and to estimate their demographic history, two different molecular markers were employed: sequences of the mitochondrial DNA control region and species-specific microsatellite loci, developed in the present study. We have sequenced a fragment of the mitochondrial control region from a total of 930 individuals of C. gasar and C. rhizophorae collected in 32 localities including the Caribbean, French Guyana, Brazilian coast and Africa. We have also genotyped 1178 individuals of both species with 9 and 11 loci of microsatellites for C. gasar and C. rhizophorae, respectively. Genetic data were analyzed with different approaches (fixation (FST) and differentiation (Jost D) indices, analysis of molecular variance (AMOVA), spatial analysis of molecular variance (SAMOVA), Bayesian Skyline Plots (BSP), factorial correspondence analysis (AFC) and Bayesian attribution analysis (STRUCTURE)). The results indicated a general structure pattern, where two different stocks were detected for both species: north and south groups, where Rio de Janeiro would be the limited region between them. Higher values of fixation indices were found for C. gasar, indicating that this species would be more structured than C. rhizophorae. Demographic analyses showed a probable expansion of populations during the last glacial period and a probable American origin of African populations. All results suggested the existence of a barrier next to Rio de Janeiro, which could be Vitoria-Trindade chain and the upwelling in the region of Cabo Frio (RJ). These results will be useful to establish criteria for the selection of seeds for cultivation along the Brazilian coast which will allow proper management of stocks of oysters preventing its disappearance as in other reefs around the world.
publishDate 2013
dc.date.available.fl_str_mv 2013-10-31
dc.date.issued.fl_str_mv 2013-03-28
dc.date.accessioned.fl_str_mv 2021-04-26T01:10:56Z
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dc.identifier.citation.fl_str_mv CAVALEIRO, Nathalia Pereira. Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical. 2013. 183 f. Tese (Doutorado em Biociências) - Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2013.
dc.identifier.uri.fl_str_mv http://www.bdtd.uerj.br/handle/1/16145
identifier_str_mv CAVALEIRO, Nathalia Pereira. Ecologia molecular de ostras (Crassostrea spp.) do Atlântico Tropical. 2013. 183 f. Tese (Doutorado em Biociências) - Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2013.
url http://www.bdtd.uerj.br/handle/1/16145
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dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Biociências
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dc.publisher.department.fl_str_mv Centro Biomédico::Instituto de Biologia Roberto Alcantara Gomes
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