Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal
Autor(a) principal: | |
---|---|
Data de Publicação: | 2013 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Biblioteca Digital de Teses e Dissertações da UERJ |
Texto Completo: | http://www.bdtd.uerj.br/handle/1/14392 |
Resumo: | The genus Acinetobacter, particularly the species A. baumannii, has emerged as a global public health problem, able to persist in the environment for a long time and presenting multidrug resistance to a wide range of antimicrobial. Interestingly this genus is unusual in Cystic Fibrosis (CF). One hypothesis raised by us is that the low frequency could be related, in part, with the colonization by other species of the genus, which are difficult to characterize laboratory and may be misidentified. Considering this, and the lack of wide ranging studies about the role of this microorganism in CF patients, this study aimed to identify the species of the genus Acinetobacter, to investigate the presence of resistance genes, determine the profile antimicrobial susceptibility and clonal relationship among samples obtained from CF patients treated at two centers of reference in Rio de Janeiro. Thirty-eight isolates of Acinetobacter spp. Isolated from 29 CF patients from June 2005 to March 2010, were identified by phenotypic methods and for four different molecular techniques. The profile of susceptibility to 11 antimicrobials used in clinical practice was performed by agar diffusion. Minimum Inhibitory Concentrations for tobramycin and polymyxin were determined by microdilution methods and diffusion gradient (E-test). The research β-lactamase resistance genes were performed by PCR and species genotyping was performed by PFGE. In this study, Acinetobacter spp. was more frequent in pediatric patients, with a high percentage of species A. not baumannii isolates. Of the different molecular techniques used to identification, the partial sequencing of the rpoB gene proved to be the most accurate method. Diverging from what is observed in the hospital samples, samples of CF patients in this study, including strains of A. Baumannii, showed high percentages of susceptibility to most antimicrobials, having only two multidrug resistance samples, both carry the gene blaOXA-23-like. Genes encoding CTX-M-15 and SHV-121 were first detected in A. baumannii and A. pitti isolated of patient with CF, all were resistant to cefepime or cefotaxime. There was clonal wide diversity among the samples. However, two clones of A. pittii, carrying blaCTX-M-15 and blaSHV-121, were shared by different patients in the same period. These results point to an epidemiological characteristic of this group of patients treated in reference centers included in the study, distinct from other hospitalized patients in the same centers. Alerting us to the clinical importance of the species A. not baumannii and its potential as a source of resistance genes silent transmission. |
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Marques, Elizabeth de Andradehttp://lattes.cnpq.br/5959485578597640Assef, Ana Paula D'alincourt Carvalhohttp://lattes.cnpq.br/5196425284967145Lopes, Agnaldo Joséhttp://lattes.cnpq.br/1548788734980219Ferreira, Alex Guerrahttp://lattes.cnpq.br/2790674907211199Carvalho, Karyne Rangelhttp://lattes.cnpq.br/4204191981666483http://lattes.cnpq.br/8993617427061216Rocha, Géssica de Araújo2021-01-07T15:15:42Z2020-02-072013-10-29ROCHA, Géssica de Araújo. Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal. 2013. 103 f. Dissertação (Mestrado em Microbiologia Médica Humana) - Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2013.http://www.bdtd.uerj.br/handle/1/14392The genus Acinetobacter, particularly the species A. baumannii, has emerged as a global public health problem, able to persist in the environment for a long time and presenting multidrug resistance to a wide range of antimicrobial. Interestingly this genus is unusual in Cystic Fibrosis (CF). One hypothesis raised by us is that the low frequency could be related, in part, with the colonization by other species of the genus, which are difficult to characterize laboratory and may be misidentified. Considering this, and the lack of wide ranging studies about the role of this microorganism in CF patients, this study aimed to identify the species of the genus Acinetobacter, to investigate the presence of resistance genes, determine the profile antimicrobial susceptibility and clonal relationship among samples obtained from CF patients treated at two centers of reference in Rio de Janeiro. Thirty-eight isolates of Acinetobacter spp. Isolated from 29 CF patients from June 2005 to March 2010, were identified by phenotypic methods and for four different molecular techniques. The profile of susceptibility to 11 antimicrobials used in clinical practice was performed by agar diffusion. Minimum Inhibitory Concentrations for tobramycin and polymyxin were determined by microdilution methods and diffusion gradient (E-test). The research β-lactamase resistance genes were performed by PCR and species genotyping was performed by PFGE. In this study, Acinetobacter spp. was more frequent in pediatric patients, with a high percentage of species A. not baumannii isolates. Of the different molecular techniques used to identification, the partial sequencing of the rpoB gene proved to be the most accurate method. Diverging from what is observed in the hospital samples, samples of CF patients in this study, including strains of A. Baumannii, showed high percentages of susceptibility to most antimicrobials, having only two multidrug resistance samples, both carry the gene blaOXA-23-like. Genes encoding CTX-M-15 and SHV-121 were first detected in A. baumannii and A. pitti isolated of patient with CF, all were resistant to cefepime or cefotaxime. There was clonal wide diversity among the samples. However, two clones of A. pittii, carrying blaCTX-M-15 and blaSHV-121, were shared by different patients in the same period. These results point to an epidemiological characteristic of this group of patients treated in reference centers included in the study, distinct from other hospitalized patients in the same centers. Alerting us to the clinical importance of the species A. not baumannii and its potential as a source of resistance genes silent transmission.O gênero Acinetobacter, particularmente a espécie A. baumannii, emergiu como um problema de saúde pública mundial, capaz de persistir no ambiente por longo tempo e de apresentar multirresistência a uma vasta gama de antimicrobianos. Curiosamente este gênero não é usual em Fibrose Cística (FC). Uma hipótese por nós levantada é que esta baixa frequência poderia estar relacionada, em parte, com a colonização por outras espécies do gênero, de difícil caracterização laboratorial e que podem ser subestimadas. Diante disto, e da ausência de estudos amplos sobre o papel deste microrganismo em pacientes com FC, este trabalho objetivou identificar as espécies do gênero Acinetobacter, investigar a presença de genes de resistência, determinar o perfil de suscetibilidade a antimicrobianos e a relação clonal entre as amostras obtidas de pacientes com FC atendidos em dois centros de referência no Rio de Janeiro. Trinta e oito amostras de Acinetobacter spp., isoladas de 29 pacientes com FC no período de junho de 2005 a março de 2010, foram identificadas por métodos fenotípicos e por quatro técnicas moleculares diferentes. O perfil de suscetibilidade a 11 antimicrobianos utilizados na prática clínica foi realizado por difusão em ágar. As Concentrações Inibitórias Minimas para tobramicina e polimixina foram determinadas pelos métodos de microdiluição e de gradiente de difusão (teste-E). A pesquisa dos genes de resistência para β-lactamase foi realizada por PCR e a genotipagem das espécies foi realizada por PFGE. Neste estudo Acinetobacter spp. foi mais frequente em pacientes pediátricos, sendo alto o percentual de espécies de A. não baumannii isoladas. Das diferentes técnicas moleculares de identificação utilizadas, o sequenciamento parcial do gene rpoB mostrou ser o método mais acurado. Discordando do que é observado nas amostras hospitalares, as amostras de pacientes com FC deste estudo, incluindo as amostras de A. baumannii, apresentaram percentuais elevados de suscetibilidade para a maior parte dos antimicrobianos testados, havendo somente duas amostras multirresistentes (MR), ambas portadoras do gene blaOXA-23-like. Os genes codificadores de CTX-M-15 e SHV-121 foram pela primeira vez detectados em A. baumannii e A. pittii de pacientes com FC, todas apresentaram resistência a cefepima ou cefotaxima. Houve uma grande diversidade clonal entre as amostras, porém, dois clones de A. pittii, portadores de genes blaCTX-M-15 e blaSHV-121, foram compartilhados por pacientes distintos no mesmo período. Estes resultados apontam para um perfil epidemiológico característico deste grupo de pacientes assistidos nos centros de referência incluídos no trabalho, distinto de outros pacientes hospitalizados nos mesmos centros. Nos alertando para a importância clínica de espécies de A. não baumannii, e do seu potencial como fonte silenciosa de transmissão de genes de resistência.Submitted by Boris Flegr (boris@uerj.br) on 2021-01-07T15:15:42Z No. of bitstreams: 1 Gessica de Araujo Rocha Tese completa.pdf: 1304885 bytes, checksum: 82d70567a8eec517ee433f7a3ef2db9d (MD5)Made available in DSpace on 2021-01-07T15:15:42Z (GMT). No. of bitstreams: 1 Gessica de Araujo Rocha Tese completa.pdf: 1304885 bytes, checksum: 82d70567a8eec517ee433f7a3ef2db9d (MD5) Previous issue date: 2013-10-29Coordenação de Aperfeiçoamento de Pessoal de Nível Superiorapplication/pdfporUniversidade do Estado do Rio de JaneiroPrograma de Pós-Graduação em MicrobiologiaUERJBRCentro Biomédico::Faculdade de Ciências MédicasCystic fibrosisAcinetobacter sppResistanceProfile clonalBacterial identificationFibrose císticaAcinetobacter sppResistênciaPerfil clonalIdentificação bacterianaFibrose císticaAcinetobacter sppResistência microbiana a medicamentosBactériasCNPQ::CIENCIAS BIOLOGICAS::MICROBIOLOGIAAcinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonalAcinetobacter spp. in patients with cystic fibrosis: identification of species, antimicrobial resistance and clonal relationshipinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UERJinstname:Universidade do Estado do Rio de Janeiro (UERJ)instacron:UERJORIGINALGessica de Araujo Rocha Tese completa.pdfapplication/pdf1304885http://www.bdtd.uerj.br/bitstream/1/14392/1/Gessica+de+Araujo+Rocha+Tese+completa.pdf82d70567a8eec517ee433f7a3ef2db9dMD511/143922024-02-26 19:54:47.596oai:www.bdtd.uerj.br:1/14392Biblioteca Digital de Teses e Dissertaçõeshttp://www.bdtd.uerj.br/PUBhttps://www.bdtd.uerj.br:8443/oai/requestbdtd.suporte@uerj.bropendoar:29032024-02-26T22:54:47Biblioteca Digital de Teses e Dissertações da UERJ - Universidade do Estado do Rio de Janeiro (UERJ)false |
dc.title.por.fl_str_mv |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
dc.title.alternative.eng.fl_str_mv |
Acinetobacter spp. in patients with cystic fibrosis: identification of species, antimicrobial resistance and clonal relationship |
title |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
spellingShingle |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal Rocha, Géssica de Araújo Cystic fibrosis Acinetobacter spp Resistance Profile clonal Bacterial identification Fibrose cística Acinetobacter spp Resistência Perfil clonal Identificação bacteriana Fibrose cística Acinetobacter spp Resistência microbiana a medicamentos Bactérias CNPQ::CIENCIAS BIOLOGICAS::MICROBIOLOGIA |
title_short |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
title_full |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
title_fullStr |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
title_full_unstemmed |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
title_sort |
Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal |
author |
Rocha, Géssica de Araújo |
author_facet |
Rocha, Géssica de Araújo |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Marques, Elizabeth de Andrade |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/5959485578597640 |
dc.contributor.advisor-co1.fl_str_mv |
Assef, Ana Paula D'alincourt Carvalho |
dc.contributor.advisor-co1Lattes.fl_str_mv |
http://lattes.cnpq.br/5196425284967145 |
dc.contributor.referee1.fl_str_mv |
Lopes, Agnaldo José |
dc.contributor.referee1Lattes.fl_str_mv |
http://lattes.cnpq.br/1548788734980219 |
dc.contributor.referee2.fl_str_mv |
Ferreira, Alex Guerra |
dc.contributor.referee2Lattes.fl_str_mv |
http://lattes.cnpq.br/2790674907211199 |
dc.contributor.referee3.fl_str_mv |
Carvalho, Karyne Rangel |
dc.contributor.referee3Lattes.fl_str_mv |
http://lattes.cnpq.br/4204191981666483 |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/8993617427061216 |
dc.contributor.author.fl_str_mv |
Rocha, Géssica de Araújo |
contributor_str_mv |
Marques, Elizabeth de Andrade Assef, Ana Paula D'alincourt Carvalho Lopes, Agnaldo José Ferreira, Alex Guerra Carvalho, Karyne Rangel |
dc.subject.eng.fl_str_mv |
Cystic fibrosis Acinetobacter spp Resistance Profile clonal Bacterial identification |
topic |
Cystic fibrosis Acinetobacter spp Resistance Profile clonal Bacterial identification Fibrose cística Acinetobacter spp Resistência Perfil clonal Identificação bacteriana Fibrose cística Acinetobacter spp Resistência microbiana a medicamentos Bactérias CNPQ::CIENCIAS BIOLOGICAS::MICROBIOLOGIA |
dc.subject.por.fl_str_mv |
Fibrose cística Acinetobacter spp Resistência Perfil clonal Identificação bacteriana Fibrose cística Acinetobacter spp Resistência microbiana a medicamentos Bactérias |
dc.subject.cnpq.fl_str_mv |
CNPQ::CIENCIAS BIOLOGICAS::MICROBIOLOGIA |
description |
The genus Acinetobacter, particularly the species A. baumannii, has emerged as a global public health problem, able to persist in the environment for a long time and presenting multidrug resistance to a wide range of antimicrobial. Interestingly this genus is unusual in Cystic Fibrosis (CF). One hypothesis raised by us is that the low frequency could be related, in part, with the colonization by other species of the genus, which are difficult to characterize laboratory and may be misidentified. Considering this, and the lack of wide ranging studies about the role of this microorganism in CF patients, this study aimed to identify the species of the genus Acinetobacter, to investigate the presence of resistance genes, determine the profile antimicrobial susceptibility and clonal relationship among samples obtained from CF patients treated at two centers of reference in Rio de Janeiro. Thirty-eight isolates of Acinetobacter spp. Isolated from 29 CF patients from June 2005 to March 2010, were identified by phenotypic methods and for four different molecular techniques. The profile of susceptibility to 11 antimicrobials used in clinical practice was performed by agar diffusion. Minimum Inhibitory Concentrations for tobramycin and polymyxin were determined by microdilution methods and diffusion gradient (E-test). The research β-lactamase resistance genes were performed by PCR and species genotyping was performed by PFGE. In this study, Acinetobacter spp. was more frequent in pediatric patients, with a high percentage of species A. not baumannii isolates. Of the different molecular techniques used to identification, the partial sequencing of the rpoB gene proved to be the most accurate method. Diverging from what is observed in the hospital samples, samples of CF patients in this study, including strains of A. Baumannii, showed high percentages of susceptibility to most antimicrobials, having only two multidrug resistance samples, both carry the gene blaOXA-23-like. Genes encoding CTX-M-15 and SHV-121 were first detected in A. baumannii and A. pitti isolated of patient with CF, all were resistant to cefepime or cefotaxime. There was clonal wide diversity among the samples. However, two clones of A. pittii, carrying blaCTX-M-15 and blaSHV-121, were shared by different patients in the same period. These results point to an epidemiological characteristic of this group of patients treated in reference centers included in the study, distinct from other hospitalized patients in the same centers. Alerting us to the clinical importance of the species A. not baumannii and its potential as a source of resistance genes silent transmission. |
publishDate |
2013 |
dc.date.issued.fl_str_mv |
2013-10-29 |
dc.date.available.fl_str_mv |
2020-02-07 |
dc.date.accessioned.fl_str_mv |
2021-01-07T15:15:42Z |
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info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
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masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
ROCHA, Géssica de Araújo. Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal. 2013. 103 f. Dissertação (Mestrado em Microbiologia Médica Humana) - Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2013. |
dc.identifier.uri.fl_str_mv |
http://www.bdtd.uerj.br/handle/1/14392 |
identifier_str_mv |
ROCHA, Géssica de Araújo. Acinetobacter spp. em indivíduos com fibrose cística: identificação das espécies, resistência a antimicrobianos e relação clonal. 2013. 103 f. Dissertação (Mestrado em Microbiologia Médica Humana) - Universidade do Estado do Rio de Janeiro, Rio de Janeiro, 2013. |
url |
http://www.bdtd.uerj.br/handle/1/14392 |
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por |
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info:eu-repo/semantics/openAccess |
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openAccess |
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Universidade do Estado do Rio de Janeiro |
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Programa de Pós-Graduação em Microbiologia |
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UERJ |
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BR |
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Centro Biomédico::Faculdade de Ciências Médicas |
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Universidade do Estado do Rio de Janeiro |
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Biblioteca Digital de Teses e Dissertações da UERJ |
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