Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Revista ciência agronômica (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402 |
Resumo: | ABSTRACT The aim of this study was to characterise genetic variability in five groups of Pseudoplatystoma reticulatum: Mato Grosso I (MT-I), Mato Grosso II (MT-II), Mato Grosso III (MT-III), Mato Grosso do Sul I (MS-I) and Mato Grosso do Sul II (MS-II), taken from a centre for genetic improvement. In order to determine the allelic frequency, observed heterozygosity (HO), inbreeding coefficients (FIS), Hardy-Weinberg equilibrium (HW-p) and genetic differentiation, eight polymorphic microsatellite loci (Pcor01, Pcor05, Pcor08, Pcor10, Ppu01, Ppu04, Ppu09 and Ppu10) were selected, in which a total of 62 alleles were observed in the individuals (n = 211). The MS-I population had the highest (Pcor08 allele 83: 0.5000) and lowest (Pcor10 allele 50: 0.1667) mean values for allele frequency. Higher (HO = 0.782; 0.782) and lower (FIS = 0.034; 0.061) values were found in groups MS-I and MT-III respectively. The HW-p showed that the five groups presented deviations for most of the loci under analysis. Finally, genetic differentiation pointed to the formation of two large genetic groups, one formed by the groups from Mato Grosso and the other by the groups from Mato Grosso do Sul. These measurements can help selection in a breeding program and maintain genetic variability. |
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Genetic variability in Pseudoplatystoma reticulatum from a breeding program in BrazilCacharaInbreeding coefficientAllelic FrequencyPopulation geneticsMicrosatellitesABSTRACT The aim of this study was to characterise genetic variability in five groups of Pseudoplatystoma reticulatum: Mato Grosso I (MT-I), Mato Grosso II (MT-II), Mato Grosso III (MT-III), Mato Grosso do Sul I (MS-I) and Mato Grosso do Sul II (MS-II), taken from a centre for genetic improvement. In order to determine the allelic frequency, observed heterozygosity (HO), inbreeding coefficients (FIS), Hardy-Weinberg equilibrium (HW-p) and genetic differentiation, eight polymorphic microsatellite loci (Pcor01, Pcor05, Pcor08, Pcor10, Ppu01, Ppu04, Ppu09 and Ppu10) were selected, in which a total of 62 alleles were observed in the individuals (n = 211). The MS-I population had the highest (Pcor08 allele 83: 0.5000) and lowest (Pcor10 allele 50: 0.1667) mean values for allele frequency. Higher (HO = 0.782; 0.782) and lower (FIS = 0.034; 0.061) values were found in groups MS-I and MT-III respectively. The HW-p showed that the five groups presented deviations for most of the loci under analysis. Finally, genetic differentiation pointed to the formation of two large genetic groups, one formed by the groups from Mato Grosso and the other by the groups from Mato Grosso do Sul. These measurements can help selection in a breeding program and maintain genetic variability.Universidade Federal do Ceará2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402Revista Ciência Agronômica v.51 n.1 2020reponame:Revista ciência agronômica (Online)instname:Universidade Federal do Ceará (UFC)instacron:UFC10.5935/1806-6690.20200007info:eu-repo/semantics/openAccessAlbuquerque,Daniele MenezesOliveira,Carlos Antonio Lopes deRodriguez,Maria Del Pilar RodriguezRibeiro,Ricardo Pereiraeng2020-01-29T00:00:00Zoai:scielo:S1806-66902020000100402Revistahttp://www.ccarevista.ufc.br/PUBhttps://old.scielo.br/oai/scielo-oai.php||alekdutra@ufc.br|| ccarev@ufc.br1806-66900045-6888opendoar:2020-01-29T00:00Revista ciência agronômica (Online) - Universidade Federal do Ceará (UFC)false |
dc.title.none.fl_str_mv |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
title |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
spellingShingle |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil Albuquerque,Daniele Menezes Cachara Inbreeding coefficient Allelic Frequency Population genetics Microsatellites |
title_short |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
title_full |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
title_fullStr |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
title_full_unstemmed |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
title_sort |
Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil |
author |
Albuquerque,Daniele Menezes |
author_facet |
Albuquerque,Daniele Menezes Oliveira,Carlos Antonio Lopes de Rodriguez,Maria Del Pilar Rodriguez Ribeiro,Ricardo Pereira |
author_role |
author |
author2 |
Oliveira,Carlos Antonio Lopes de Rodriguez,Maria Del Pilar Rodriguez Ribeiro,Ricardo Pereira |
author2_role |
author author author |
dc.contributor.author.fl_str_mv |
Albuquerque,Daniele Menezes Oliveira,Carlos Antonio Lopes de Rodriguez,Maria Del Pilar Rodriguez Ribeiro,Ricardo Pereira |
dc.subject.por.fl_str_mv |
Cachara Inbreeding coefficient Allelic Frequency Population genetics Microsatellites |
topic |
Cachara Inbreeding coefficient Allelic Frequency Population genetics Microsatellites |
description |
ABSTRACT The aim of this study was to characterise genetic variability in five groups of Pseudoplatystoma reticulatum: Mato Grosso I (MT-I), Mato Grosso II (MT-II), Mato Grosso III (MT-III), Mato Grosso do Sul I (MS-I) and Mato Grosso do Sul II (MS-II), taken from a centre for genetic improvement. In order to determine the allelic frequency, observed heterozygosity (HO), inbreeding coefficients (FIS), Hardy-Weinberg equilibrium (HW-p) and genetic differentiation, eight polymorphic microsatellite loci (Pcor01, Pcor05, Pcor08, Pcor10, Ppu01, Ppu04, Ppu09 and Ppu10) were selected, in which a total of 62 alleles were observed in the individuals (n = 211). The MS-I population had the highest (Pcor08 allele 83: 0.5000) and lowest (Pcor10 allele 50: 0.1667) mean values for allele frequency. Higher (HO = 0.782; 0.782) and lower (FIS = 0.034; 0.061) values were found in groups MS-I and MT-III respectively. The HW-p showed that the five groups presented deviations for most of the loci under analysis. Finally, genetic differentiation pointed to the formation of two large genetic groups, one formed by the groups from Mato Grosso and the other by the groups from Mato Grosso do Sul. These measurements can help selection in a breeding program and maintain genetic variability. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.5935/1806-6690.20200007 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Universidade Federal do Ceará |
publisher.none.fl_str_mv |
Universidade Federal do Ceará |
dc.source.none.fl_str_mv |
Revista Ciência Agronômica v.51 n.1 2020 reponame:Revista ciência agronômica (Online) instname:Universidade Federal do Ceará (UFC) instacron:UFC |
instname_str |
Universidade Federal do Ceará (UFC) |
instacron_str |
UFC |
institution |
UFC |
reponame_str |
Revista ciência agronômica (Online) |
collection |
Revista ciência agronômica (Online) |
repository.name.fl_str_mv |
Revista ciência agronômica (Online) - Universidade Federal do Ceará (UFC) |
repository.mail.fl_str_mv |
||alekdutra@ufc.br|| ccarev@ufc.br |
_version_ |
1750297489778409472 |