DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites

Detalhes bibliográficos
Autor(a) principal: FÃbio Costa Farias
Data de Publicação: 2008
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFC
Texto Completo: http://www.teses.ufc.br/tde_busca/arquivo.php?codArquivo=4636
Resumo: The cashew crop is one of the most important agribusiness activity in northeastern Brazil, mainly due to its social and economic impact in that region. Nevertheless, severe outbreaks of gummosis and black branch dieback, both caused by the fungus Lasiodiplodia theobromae have imposed great losses under semi-arid conditions. Presently, these diseases are the most important ones over semi-arid conditions in Northeast Region. However, the limited amount of basic knowledge about population biology, genetic structure and pathogen, host and environment interaction are likely to hinder the efforts to manage this pathogen. This study was developed in order to establish a L. theobromae population associated with cashew plant from different ecological regions in the northeastern Brazil, to determine the survival endophytic ability of this fungus in cashew tissues and to characterize this population by using microsatellite markers. Initially, samples of cashew stems were gathered from three natural ecosystems in Brazil in order to isolate L. theobromae. A population of 41 isolates associated with cashew was obtained. Bioassays aiming to determine the surviving ability of this fungus in non infected tissues close to gummosis lesions were conducted using sampled stems. A subpopulation of 15 isolates of L. theobromae was used for DNA extraction followed by polimerase chain reaction (PCR) using 15 oligonucleotides primers designed to amplify microsatellites regions. PCR products were observed on agarose gel in ethidium bromide electrophoresis and analyzed by the unweighted pair-group method with arithmetic mean (UPGMA) by the Nei and Li similarity coefficient. L. theobromae was successfully isolated from cashew tissues as far as 90 cm from the border of the gummosis lesion in both up and down directions. This result confirms the endophytic behavior of this fungus in cashew plant. A great genetic variability of L. theobromae population was observed as determined by 16 similarities groups varying from 91% to 5%. None isolate achieved 100% similarity. The greatest similarity was found between pathogenic and endophytic isolates.
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spelling info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisDetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlitesDetection and diversity of Lasiodiploidia theobromae assiciated with cashew plants using microssatellites markers2008-07-25Josà EmÃlson Cardoso05899737387http://lattes.cnpq.br/1887235114859635Ervino Bleicher67497101820http://lattes.cnpq.br/7031811856817396Francisco Marto Pinto Viana10490825320http://lattes.cnpq.br/212228391282836766588456387http://lattes.cnpq.br/3435129883709107 FÃbio Costa FariasUniversidade Federal do CearÃPrograma de PÃs-GraduaÃÃo em Agronomia/FitotecniaUFCBRSSR PCR Gummosis Black branch diebackSSR PCR Resinose PodridÃo preta das hastesFITOPATOLOGIAThe cashew crop is one of the most important agribusiness activity in northeastern Brazil, mainly due to its social and economic impact in that region. Nevertheless, severe outbreaks of gummosis and black branch dieback, both caused by the fungus Lasiodiplodia theobromae have imposed great losses under semi-arid conditions. Presently, these diseases are the most important ones over semi-arid conditions in Northeast Region. However, the limited amount of basic knowledge about population biology, genetic structure and pathogen, host and environment interaction are likely to hinder the efforts to manage this pathogen. This study was developed in order to establish a L. theobromae population associated with cashew plant from different ecological regions in the northeastern Brazil, to determine the survival endophytic ability of this fungus in cashew tissues and to characterize this population by using microsatellite markers. Initially, samples of cashew stems were gathered from three natural ecosystems in Brazil in order to isolate L. theobromae. A population of 41 isolates associated with cashew was obtained. Bioassays aiming to determine the surviving ability of this fungus in non infected tissues close to gummosis lesions were conducted using sampled stems. A subpopulation of 15 isolates of L. theobromae was used for DNA extraction followed by polimerase chain reaction (PCR) using 15 oligonucleotides primers designed to amplify microsatellites regions. PCR products were observed on agarose gel in ethidium bromide electrophoresis and analyzed by the unweighted pair-group method with arithmetic mean (UPGMA) by the Nei and Li similarity coefficient. L. theobromae was successfully isolated from cashew tissues as far as 90 cm from the border of the gummosis lesion in both up and down directions. This result confirms the endophytic behavior of this fungus in cashew plant. A great genetic variability of L. theobromae population was observed as determined by 16 similarities groups varying from 91% to 5%. None isolate achieved 100% similarity. The greatest similarity was found between pathogenic and endophytic isolates.A cultura do cajueiro representa uma das mais importantes atividades agroindustriais do Nordeste do Brasil, sobretudo pelo seu carÃter social e econÃmico para esta regiÃo. Entretanto, a ocorrÃncia epifÃtica de doenÃas como a resinose e a podridÃo-preta-da-haste, ambas causadas pelo fungo Lasiodiplodia theobromae, tÃm produzido severas perdas principalmente nas regiÃes semi-Ãridas. Essas jà assumem a posiÃÃo de principais doenÃas em algumas regiÃes do semi-Ãrido nordestino. Entretanto, os conhecimentos bÃsicos sobre a biologia populacional, constituiÃÃo genÃtica e interaÃÃo do patÃgeno com as plantas hospedeiras, por exemplo, sÃo reduzidos e superficiais, nÃo permitindo significativos avanÃos no manejo dessas enfermidades. Este estudo teve como objetivos estabelecer uma populaÃÃo de isolados L. theobromae associados ao cajueiro em diferentes micro-regiÃes do nordeste brasileiro, determinar a capacidade deste fungo sobreviver endofiticamente em tecidos de cajueiro e caracterizar geneticamente essa populaÃÃo usando marcadores microssatÃlites. Inicialmente, foram coletadas amostras de caules de cajueiro em trÃs ecossistemas naturais brasileiros visando isolar o patÃgeno. Foi estabelecida uma populaÃÃo de 41 isolados de L. theobromae associados ao cajueiro. Bioensaios visando a determinaÃÃo da sobrevivÃncia do fungo em tecidos nÃo infectados, mas prÃximos Ãs lesÃes foram desenvolvidos a partir de amostras de caules com resinose. Uma sub-populaÃÃo de 15 isolados de L. theobromae foi usada na extraÃÃo de DNA e posterior submissÃo a reaÃÃes de polimerase (PCR) em cadeia usando 15 primers flanqueadores de regiÃes contendo seqÃÃncias simples repetidas (microssatÃlites). Os produtos amplificados do PCR foram observados em gel de eletroforese corados com brometo de etÃdio e analisados pelo mÃtodo de agrupamento nÃo balanceado baseado na mÃdia aritmÃtica (UPGMA), estimando-se as similaridades genÃticas pelo coeficiente de Nei e Li. L. theobromae foi isolado de tecidos do caule do cajueiro atà 90 cm de distÃncia da extremidade da lesÃo caracterÃstica de resinose nos dois sentidos (ascendente e descendente) em relaÃÃo à lesÃo, confirmando o comportamento endofÃtico desse fungo em cajueiro. Uma grande variabilidade genÃtica da populaÃÃo avaliada, representada por 16 grupos de similaridade variando de 91% a 5%, foi observada. Nenhum isolado foi igual (100% similaridade). As maiores similaridades (91%) foram observadas entre isolados comprovadamente patogÃnicos e supostamente endofÃticos. FundaÃÃo Cearense de Apoio ao Desenvolvimento Cientifico e TecnolÃgicohttp://www.teses.ufc.br/tde_busca/arquivo.php?codArquivo=4636application/pdfinfo:eu-repo/semantics/openAccessporreponame:Biblioteca Digital de Teses e Dissertações da UFCinstname:Universidade Federal do Cearáinstacron:UFC2019-01-21T11:17:36Zmail@mail.com -
dc.title.pt.fl_str_mv DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
dc.title.alternative..fl_str_mv Detection and diversity of Lasiodiploidia theobromae assiciated with cashew plants using microssatellites markers
title DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
spellingShingle DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
FÃbio Costa Farias
SSR
PCR
Resinose
PodridÃo preta das hastes
FITOPATOLOGIA
title_short DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
title_full DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
title_fullStr DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
title_full_unstemmed DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
title_sort DetecÃÃo da diversidade e associaÃÃo de Lasiodiplodia theobromae com o cajueiro utilizando marcadores microssatÃlites
author FÃbio Costa Farias
author_facet FÃbio Costa Farias
author_role author
dc.contributor.advisor1.fl_str_mv Josà EmÃlson Cardoso
dc.contributor.advisor1ID.fl_str_mv 05899737387
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/1887235114859635
dc.contributor.referee1.fl_str_mv Ervino Bleicher
dc.contributor.referee1ID.fl_str_mv 67497101820
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/7031811856817396
dc.contributor.referee2.fl_str_mv Francisco Marto Pinto Viana
dc.contributor.referee2ID.fl_str_mv 10490825320
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/2122283912828367
dc.contributor.authorID.fl_str_mv 66588456387
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/3435129883709107
dc.contributor.author.fl_str_mv FÃbio Costa Farias
contributor_str_mv Josà EmÃlson Cardoso
Ervino Bleicher
Francisco Marto Pinto Viana
dc.subject.por.fl_str_mv SSR
PCR
Resinose
PodridÃo preta das hastes
topic SSR
PCR
Resinose
PodridÃo preta das hastes
FITOPATOLOGIA
dc.subject.cnpq.fl_str_mv FITOPATOLOGIA
dc.description.sponsorship.fl_txt_mv FundaÃÃo Cearense de Apoio ao Desenvolvimento Cientifico e TecnolÃgico
dc.description.abstract..fl_txt_mv The cashew crop is one of the most important agribusiness activity in northeastern Brazil, mainly due to its social and economic impact in that region. Nevertheless, severe outbreaks of gummosis and black branch dieback, both caused by the fungus Lasiodiplodia theobromae have imposed great losses under semi-arid conditions. Presently, these diseases are the most important ones over semi-arid conditions in Northeast Region. However, the limited amount of basic knowledge about population biology, genetic structure and pathogen, host and environment interaction are likely to hinder the efforts to manage this pathogen. This study was developed in order to establish a L. theobromae population associated with cashew plant from different ecological regions in the northeastern Brazil, to determine the survival endophytic ability of this fungus in cashew tissues and to characterize this population by using microsatellite markers. Initially, samples of cashew stems were gathered from three natural ecosystems in Brazil in order to isolate L. theobromae. A population of 41 isolates associated with cashew was obtained. Bioassays aiming to determine the surviving ability of this fungus in non infected tissues close to gummosis lesions were conducted using sampled stems. A subpopulation of 15 isolates of L. theobromae was used for DNA extraction followed by polimerase chain reaction (PCR) using 15 oligonucleotides primers designed to amplify microsatellites regions. PCR products were observed on agarose gel in ethidium bromide electrophoresis and analyzed by the unweighted pair-group method with arithmetic mean (UPGMA) by the Nei and Li similarity coefficient. L. theobromae was successfully isolated from cashew tissues as far as 90 cm from the border of the gummosis lesion in both up and down directions. This result confirms the endophytic behavior of this fungus in cashew plant. A great genetic variability of L. theobromae population was observed as determined by 16 similarities groups varying from 91% to 5%. None isolate achieved 100% similarity. The greatest similarity was found between pathogenic and endophytic isolates.
dc.description.abstract.por.fl_txt_mv A cultura do cajueiro representa uma das mais importantes atividades agroindustriais do Nordeste do Brasil, sobretudo pelo seu carÃter social e econÃmico para esta regiÃo. Entretanto, a ocorrÃncia epifÃtica de doenÃas como a resinose e a podridÃo-preta-da-haste, ambas causadas pelo fungo Lasiodiplodia theobromae, tÃm produzido severas perdas principalmente nas regiÃes semi-Ãridas. Essas jà assumem a posiÃÃo de principais doenÃas em algumas regiÃes do semi-Ãrido nordestino. Entretanto, os conhecimentos bÃsicos sobre a biologia populacional, constituiÃÃo genÃtica e interaÃÃo do patÃgeno com as plantas hospedeiras, por exemplo, sÃo reduzidos e superficiais, nÃo permitindo significativos avanÃos no manejo dessas enfermidades. Este estudo teve como objetivos estabelecer uma populaÃÃo de isolados L. theobromae associados ao cajueiro em diferentes micro-regiÃes do nordeste brasileiro, determinar a capacidade deste fungo sobreviver endofiticamente em tecidos de cajueiro e caracterizar geneticamente essa populaÃÃo usando marcadores microssatÃlites. Inicialmente, foram coletadas amostras de caules de cajueiro em trÃs ecossistemas naturais brasileiros visando isolar o patÃgeno. Foi estabelecida uma populaÃÃo de 41 isolados de L. theobromae associados ao cajueiro. Bioensaios visando a determinaÃÃo da sobrevivÃncia do fungo em tecidos nÃo infectados, mas prÃximos Ãs lesÃes foram desenvolvidos a partir de amostras de caules com resinose. Uma sub-populaÃÃo de 15 isolados de L. theobromae foi usada na extraÃÃo de DNA e posterior submissÃo a reaÃÃes de polimerase (PCR) em cadeia usando 15 primers flanqueadores de regiÃes contendo seqÃÃncias simples repetidas (microssatÃlites). Os produtos amplificados do PCR foram observados em gel de eletroforese corados com brometo de etÃdio e analisados pelo mÃtodo de agrupamento nÃo balanceado baseado na mÃdia aritmÃtica (UPGMA), estimando-se as similaridades genÃticas pelo coeficiente de Nei e Li. L. theobromae foi isolado de tecidos do caule do cajueiro atà 90 cm de distÃncia da extremidade da lesÃo caracterÃstica de resinose nos dois sentidos (ascendente e descendente) em relaÃÃo à lesÃo, confirmando o comportamento endofÃtico desse fungo em cajueiro. Uma grande variabilidade genÃtica da populaÃÃo avaliada, representada por 16 grupos de similaridade variando de 91% a 5%, foi observada. Nenhum isolado foi igual (100% similaridade). As maiores similaridades (91%) foram observadas entre isolados comprovadamente patogÃnicos e supostamente endofÃticos.
description The cashew crop is one of the most important agribusiness activity in northeastern Brazil, mainly due to its social and economic impact in that region. Nevertheless, severe outbreaks of gummosis and black branch dieback, both caused by the fungus Lasiodiplodia theobromae have imposed great losses under semi-arid conditions. Presently, these diseases are the most important ones over semi-arid conditions in Northeast Region. However, the limited amount of basic knowledge about population biology, genetic structure and pathogen, host and environment interaction are likely to hinder the efforts to manage this pathogen. This study was developed in order to establish a L. theobromae population associated with cashew plant from different ecological regions in the northeastern Brazil, to determine the survival endophytic ability of this fungus in cashew tissues and to characterize this population by using microsatellite markers. Initially, samples of cashew stems were gathered from three natural ecosystems in Brazil in order to isolate L. theobromae. A population of 41 isolates associated with cashew was obtained. Bioassays aiming to determine the surviving ability of this fungus in non infected tissues close to gummosis lesions were conducted using sampled stems. A subpopulation of 15 isolates of L. theobromae was used for DNA extraction followed by polimerase chain reaction (PCR) using 15 oligonucleotides primers designed to amplify microsatellites regions. PCR products were observed on agarose gel in ethidium bromide electrophoresis and analyzed by the unweighted pair-group method with arithmetic mean (UPGMA) by the Nei and Li similarity coefficient. L. theobromae was successfully isolated from cashew tissues as far as 90 cm from the border of the gummosis lesion in both up and down directions. This result confirms the endophytic behavior of this fungus in cashew plant. A great genetic variability of L. theobromae population was observed as determined by 16 similarities groups varying from 91% to 5%. None isolate achieved 100% similarity. The greatest similarity was found between pathogenic and endophytic isolates.
publishDate 2008
dc.date.issued.fl_str_mv 2008-07-25
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dc.publisher.country.fl_str_mv BR
publisher.none.fl_str_mv Universidade Federal do CearÃ
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