The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora

Detalhes bibliográficos
Autor(a) principal: Silva, Paulo Marcos Amaral
Data de Publicação: 2019
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
Texto Completo: http://repositorio.ufes.br/handle/10/13349
Resumo: Indirect somatic embryogenesis (ISE) establishment for Coffea species started in the 1970s. Since then, intraspecific variations in the morphogenic pathway have been reported, despite the meticulous standardization of the environmental conditions in vitro. Several authors have suggested that these variations are the result of genetic, epigenetic and/or physiological events, highlighting the need for investigations to know the respective causes. Along these lines, this study aimed to investigate and describe, for the first time, the changes in and influence of epigenetic and physiological aspects during cell proliferation and somatic embryo regeneration from cell aggregate suspensions of Coffea canephora. The cell proliferation step was characterized by increase in cell mass in all subcultures; relatively low mean values of global 5-methylcytosine (5-mC%), abscisic acid (ABA) and indole-3-acetic acid (IAA); high mean value of 1-aminocyclopropane 1-carboxylic acid (ACC, an ethylene precursor); and increases followed by decreases in spermidine (Spd, a polyamine) levels. With regard to the in vitro conditions, these aspects promoted the cell proliferation, showing that the epigenome and metabolome are fundamental for the first morphogenic moment of ISE. In turn, the second ISE moment is correlated with epigenetic and physiological changes. The competence acquisition, determination and cell differentiation steps were marked by increases in mean values of 5-mC%, IAA and ABA and decreases in ACC and Spd, evincing that these epigenetic and physiological changes are the triggers for regeneration and maturation of somatic embryos. Therefore, dynamic and coordinated epigenetic and physiological changes directly affect the two morphogenic moments of C. canephora ISE.
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spelling Clarindo, Wellington Ronildohttps://orcid.org/0000000288268620http://lattes.cnpq.br/0339970047422716Silva, Paulo Marcos Amaralhttps://orcid.org/http://lattes.cnpq.br/2853274010679824Fontes, Milene Miranda Pracahttps://orcid.org/0000000177389518http://lattes.cnpq.br/1372644511398549Mendonca, Maria Andreia Correahttps://orcid.org/0000-0002-3798-3309http://lattes.cnpq.br/3412339192891083Sanglard, Natalia Arrudahttps://orcid.org/0000-0003-3219-8616http://lattes.cnpq.br/7809043431671687Carrijo, Tatiana Tavareshttps://orcid.org/0000000283660738http://lattes.cnpq.br/04798547775570162024-05-29T22:11:00Z2024-05-29T22:11:00Z2019-07-15Indirect somatic embryogenesis (ISE) establishment for Coffea species started in the 1970s. Since then, intraspecific variations in the morphogenic pathway have been reported, despite the meticulous standardization of the environmental conditions in vitro. Several authors have suggested that these variations are the result of genetic, epigenetic and/or physiological events, highlighting the need for investigations to know the respective causes. Along these lines, this study aimed to investigate and describe, for the first time, the changes in and influence of epigenetic and physiological aspects during cell proliferation and somatic embryo regeneration from cell aggregate suspensions of Coffea canephora. The cell proliferation step was characterized by increase in cell mass in all subcultures; relatively low mean values of global 5-methylcytosine (5-mC%), abscisic acid (ABA) and indole-3-acetic acid (IAA); high mean value of 1-aminocyclopropane 1-carboxylic acid (ACC, an ethylene precursor); and increases followed by decreases in spermidine (Spd, a polyamine) levels. With regard to the in vitro conditions, these aspects promoted the cell proliferation, showing that the epigenome and metabolome are fundamental for the first morphogenic moment of ISE. In turn, the second ISE moment is correlated with epigenetic and physiological changes. The competence acquisition, determination and cell differentiation steps were marked by increases in mean values of 5-mC%, IAA and ABA and decreases in ACC and Spd, evincing that these epigenetic and physiological changes are the triggers for regeneration and maturation of somatic embryos. Therefore, dynamic and coordinated epigenetic and physiological changes directly affect the two morphogenic moments of C. canephora ISE.O estabelecimento de embriogênese somática indireta (ESI) para espécies de Coffea iniciou-se na década de 1970. Desde então, variações intraespecíficas na via morfogênica vêm sendo reportadas, mesmo com uma meticulosa padronização das condições ambientais in vitro. Diversos autores sugeriram que essas variações são resultado de eventos genéticos, epigenéticos e/ou fisiológicos, destacando a necessidade de pesquisas para conhecer as causas. Nesse sentido, este estudo teve por objetivo investigar e descrever, pela primeira vez, as mudanças e a influência dos aspectos epigenéticos e fisiológicos durante a proliferação celular e regeneração de embriões somáticos a partir de suspensões de agregados celulares de Coffea canephora. A etapa de proliferação celular foi caracterizada pelo aumento na massa celular em todos os subcultivos, sendo observados valores médios relativamente baixos de 5 metilcitosina (5-mC%), ácido abscísico (ABA) e ácido indol-3-acético (AIA); valores médios relativamente altos de ácido 1-aminociclopropano-1-carboxílico (ACC, um precursor do etileno); e aumentos seguidos de reduções nos níveis de espermidina (Epd, uma poliamina). Além das condições in vitro, esses aspectos promoveram a proliferação celular, mostrando que o epigenoma e o metaboloma são fundamentais para o primeiro momento da ESI. Por sua vez, o segundo momento da ESI está correlacionado com mudanças epigenéticas e fisiológicas. As etapas de aquisição de competência, determinação e diferenciação celular foram marcadas por aumentos nos valores médios de 5-mC%, AIA e ABA e diminuições em ACC e Epd, evidenciando que essas mudanças epigenéticas e fisiológicas são os gatilhos para a regeneração e maturação de embriões somáticos. Portanto, mudanças epigenéticas e fisiológicas dinâmicas e coordenadas afetam diretamente os dois momentos morfogênicos da ESI em C. canephora.Fundação de Amparo à Pesquisa do Espírito Santo (FAPES)Texthttp://repositorio.ufes.br/handle/10/13349porUniversidade Federal do Espírito SantoDoutorado em Genética e MelhoramentoPrograma de Pós-Graduação em Genética e MelhoramentoUFESBRCentro de Ciências Agrárias e Engenhariassubject.br-rjbnMelhoramento Vegetal5-metilcitosinaCoffeaCultura de tecidos vegetaisFitohormôniosPoliaminasRegeneração in vitroPhytohormonesPlant tissue culturePolyaminesIn vitro regenerationThe epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephoratitle.alternativeinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)instname:Universidade Federal do Espírito Santo (UFES)instacron:UFESORIGINALPauloMarcosAmaralSilva-2019-Tese.pdfapplication/pdf1844767http://repositorio.ufes.br/bitstreams/5d099b70-26e8-43c8-b0e9-66865f78fb91/download30c226fc2712d54e914cbcdab0e6f5c8MD5110/133492024-08-28 20:49:27.892oai:repositorio.ufes.br:10/13349http://repositorio.ufes.brRepositório InstitucionalPUBhttp://repositorio.ufes.br/oai/requestopendoar:21082024-10-15T18:02:30.766043Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) - Universidade Federal do Espírito Santo (UFES)false
dc.title.none.fl_str_mv The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
dc.title.alternative.none.fl_str_mv title.alternative
title The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
spellingShingle The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
Silva, Paulo Marcos Amaral
Melhoramento Vegetal
5-metilcitosina
Coffea
Cultura de tecidos vegetais
Fitohormônios
Poliaminas
Regeneração in vitro
Phytohormones
Plant tissue culture
Polyamines
In vitro regeneration
subject.br-rjbn
title_short The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
title_full The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
title_fullStr The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
title_full_unstemmed The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
title_sort The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
author Silva, Paulo Marcos Amaral
author_facet Silva, Paulo Marcos Amaral
author_role author
dc.contributor.authorID.none.fl_str_mv https://orcid.org/
dc.contributor.authorLattes.none.fl_str_mv http://lattes.cnpq.br/2853274010679824
dc.contributor.advisor1.fl_str_mv Clarindo, Wellington Ronildo
dc.contributor.advisor1ID.fl_str_mv https://orcid.org/0000000288268620
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/0339970047422716
dc.contributor.author.fl_str_mv Silva, Paulo Marcos Amaral
dc.contributor.referee1.fl_str_mv Fontes, Milene Miranda Praca
dc.contributor.referee1ID.fl_str_mv https://orcid.org/0000000177389518
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/1372644511398549
dc.contributor.referee2.fl_str_mv Mendonca, Maria Andreia Correa
dc.contributor.referee2ID.fl_str_mv https://orcid.org/0000-0002-3798-3309
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/3412339192891083
dc.contributor.referee3.fl_str_mv Sanglard, Natalia Arruda
dc.contributor.referee3ID.fl_str_mv https://orcid.org/0000-0003-3219-8616
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/7809043431671687
dc.contributor.referee4.fl_str_mv Carrijo, Tatiana Tavares
dc.contributor.referee4ID.fl_str_mv https://orcid.org/0000000283660738
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/0479854777557016
contributor_str_mv Clarindo, Wellington Ronildo
Fontes, Milene Miranda Praca
Mendonca, Maria Andreia Correa
Sanglard, Natalia Arruda
Carrijo, Tatiana Tavares
dc.subject.cnpq.fl_str_mv Melhoramento Vegetal
topic Melhoramento Vegetal
5-metilcitosina
Coffea
Cultura de tecidos vegetais
Fitohormônios
Poliaminas
Regeneração in vitro
Phytohormones
Plant tissue culture
Polyamines
In vitro regeneration
subject.br-rjbn
dc.subject.por.fl_str_mv 5-metilcitosina
Coffea
Cultura de tecidos vegetais
Fitohormônios
Poliaminas
Regeneração in vitro
Phytohormones
Plant tissue culture
Polyamines
In vitro regeneration
dc.subject.br-rjbn.none.fl_str_mv subject.br-rjbn
description Indirect somatic embryogenesis (ISE) establishment for Coffea species started in the 1970s. Since then, intraspecific variations in the morphogenic pathway have been reported, despite the meticulous standardization of the environmental conditions in vitro. Several authors have suggested that these variations are the result of genetic, epigenetic and/or physiological events, highlighting the need for investigations to know the respective causes. Along these lines, this study aimed to investigate and describe, for the first time, the changes in and influence of epigenetic and physiological aspects during cell proliferation and somatic embryo regeneration from cell aggregate suspensions of Coffea canephora. The cell proliferation step was characterized by increase in cell mass in all subcultures; relatively low mean values of global 5-methylcytosine (5-mC%), abscisic acid (ABA) and indole-3-acetic acid (IAA); high mean value of 1-aminocyclopropane 1-carboxylic acid (ACC, an ethylene precursor); and increases followed by decreases in spermidine (Spd, a polyamine) levels. With regard to the in vitro conditions, these aspects promoted the cell proliferation, showing that the epigenome and metabolome are fundamental for the first morphogenic moment of ISE. In turn, the second ISE moment is correlated with epigenetic and physiological changes. The competence acquisition, determination and cell differentiation steps were marked by increases in mean values of 5-mC%, IAA and ABA and decreases in ACC and Spd, evincing that these epigenetic and physiological changes are the triggers for regeneration and maturation of somatic embryos. Therefore, dynamic and coordinated epigenetic and physiological changes directly affect the two morphogenic moments of C. canephora ISE.
publishDate 2019
dc.date.issued.fl_str_mv 2019-07-15
dc.date.accessioned.fl_str_mv 2024-05-29T22:11:00Z
dc.date.available.fl_str_mv 2024-05-29T22:11:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.publisher.none.fl_str_mv Universidade Federal do Espírito Santo
Doutorado em Genética e Melhoramento
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dc.publisher.initials.fl_str_mv UFES
dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Centro de Ciências Agrárias e Engenharias
publisher.none.fl_str_mv Universidade Federal do Espírito Santo
Doutorado em Genética e Melhoramento
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