The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Tipo de documento: | Tese |
Idioma: | por |
Título da fonte: | Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) |
Texto Completo: | http://repositorio.ufes.br/handle/10/13349 |
Resumo: | Indirect somatic embryogenesis (ISE) establishment for Coffea species started in the 1970s. Since then, intraspecific variations in the morphogenic pathway have been reported, despite the meticulous standardization of the environmental conditions in vitro. Several authors have suggested that these variations are the result of genetic, epigenetic and/or physiological events, highlighting the need for investigations to know the respective causes. Along these lines, this study aimed to investigate and describe, for the first time, the changes in and influence of epigenetic and physiological aspects during cell proliferation and somatic embryo regeneration from cell aggregate suspensions of Coffea canephora. The cell proliferation step was characterized by increase in cell mass in all subcultures; relatively low mean values of global 5-methylcytosine (5-mC%), abscisic acid (ABA) and indole-3-acetic acid (IAA); high mean value of 1-aminocyclopropane 1-carboxylic acid (ACC, an ethylene precursor); and increases followed by decreases in spermidine (Spd, a polyamine) levels. With regard to the in vitro conditions, these aspects promoted the cell proliferation, showing that the epigenome and metabolome are fundamental for the first morphogenic moment of ISE. In turn, the second ISE moment is correlated with epigenetic and physiological changes. The competence acquisition, determination and cell differentiation steps were marked by increases in mean values of 5-mC%, IAA and ABA and decreases in ACC and Spd, evincing that these epigenetic and physiological changes are the triggers for regeneration and maturation of somatic embryos. Therefore, dynamic and coordinated epigenetic and physiological changes directly affect the two morphogenic moments of C. canephora ISE. |
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Clarindo, Wellington Ronildohttps://orcid.org/0000000288268620http://lattes.cnpq.br/0339970047422716Silva, Paulo Marcos Amaralhttps://orcid.org/http://lattes.cnpq.br/2853274010679824Fontes, Milene Miranda Pracahttps://orcid.org/0000000177389518http://lattes.cnpq.br/1372644511398549Mendonca, Maria Andreia Correahttps://orcid.org/0000-0002-3798-3309http://lattes.cnpq.br/3412339192891083Sanglard, Natalia Arrudahttps://orcid.org/0000-0003-3219-8616http://lattes.cnpq.br/7809043431671687Carrijo, Tatiana Tavareshttps://orcid.org/0000000283660738http://lattes.cnpq.br/04798547775570162024-05-29T22:11:00Z2024-05-29T22:11:00Z2019-07-15Indirect somatic embryogenesis (ISE) establishment for Coffea species started in the 1970s. Since then, intraspecific variations in the morphogenic pathway have been reported, despite the meticulous standardization of the environmental conditions in vitro. Several authors have suggested that these variations are the result of genetic, epigenetic and/or physiological events, highlighting the need for investigations to know the respective causes. Along these lines, this study aimed to investigate and describe, for the first time, the changes in and influence of epigenetic and physiological aspects during cell proliferation and somatic embryo regeneration from cell aggregate suspensions of Coffea canephora. The cell proliferation step was characterized by increase in cell mass in all subcultures; relatively low mean values of global 5-methylcytosine (5-mC%), abscisic acid (ABA) and indole-3-acetic acid (IAA); high mean value of 1-aminocyclopropane 1-carboxylic acid (ACC, an ethylene precursor); and increases followed by decreases in spermidine (Spd, a polyamine) levels. With regard to the in vitro conditions, these aspects promoted the cell proliferation, showing that the epigenome and metabolome are fundamental for the first morphogenic moment of ISE. In turn, the second ISE moment is correlated with epigenetic and physiological changes. The competence acquisition, determination and cell differentiation steps were marked by increases in mean values of 5-mC%, IAA and ABA and decreases in ACC and Spd, evincing that these epigenetic and physiological changes are the triggers for regeneration and maturation of somatic embryos. Therefore, dynamic and coordinated epigenetic and physiological changes directly affect the two morphogenic moments of C. canephora ISE.O estabelecimento de embriogênese somática indireta (ESI) para espécies de Coffea iniciou-se na década de 1970. Desde então, variações intraespecíficas na via morfogênica vêm sendo reportadas, mesmo com uma meticulosa padronização das condições ambientais in vitro. Diversos autores sugeriram que essas variações são resultado de eventos genéticos, epigenéticos e/ou fisiológicos, destacando a necessidade de pesquisas para conhecer as causas. Nesse sentido, este estudo teve por objetivo investigar e descrever, pela primeira vez, as mudanças e a influência dos aspectos epigenéticos e fisiológicos durante a proliferação celular e regeneração de embriões somáticos a partir de suspensões de agregados celulares de Coffea canephora. A etapa de proliferação celular foi caracterizada pelo aumento na massa celular em todos os subcultivos, sendo observados valores médios relativamente baixos de 5 metilcitosina (5-mC%), ácido abscísico (ABA) e ácido indol-3-acético (AIA); valores médios relativamente altos de ácido 1-aminociclopropano-1-carboxílico (ACC, um precursor do etileno); e aumentos seguidos de reduções nos níveis de espermidina (Epd, uma poliamina). Além das condições in vitro, esses aspectos promoveram a proliferação celular, mostrando que o epigenoma e o metaboloma são fundamentais para o primeiro momento da ESI. Por sua vez, o segundo momento da ESI está correlacionado com mudanças epigenéticas e fisiológicas. As etapas de aquisição de competência, determinação e diferenciação celular foram marcadas por aumentos nos valores médios de 5-mC%, AIA e ABA e diminuições em ACC e Epd, evidenciando que essas mudanças epigenéticas e fisiológicas são os gatilhos para a regeneração e maturação de embriões somáticos. Portanto, mudanças epigenéticas e fisiológicas dinâmicas e coordenadas afetam diretamente os dois momentos morfogênicos da ESI em C. canephora.Fundação de Amparo à Pesquisa do Espírito Santo (FAPES)Texthttp://repositorio.ufes.br/handle/10/13349porUniversidade Federal do Espírito SantoDoutorado em Genética e MelhoramentoPrograma de Pós-Graduação em Genética e MelhoramentoUFESBRCentro de Ciências Agrárias e Engenhariassubject.br-rjbnMelhoramento Vegetal5-metilcitosinaCoffeaCultura de tecidos vegetaisFitohormôniosPoliaminasRegeneração in vitroPhytohormonesPlant tissue culturePolyaminesIn vitro regenerationThe epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephoratitle.alternativeinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)instname:Universidade Federal do Espírito Santo (UFES)instacron:UFESORIGINALPauloMarcosAmaralSilva-2019-Tese.pdfapplication/pdf1844767http://repositorio.ufes.br/bitstreams/5d099b70-26e8-43c8-b0e9-66865f78fb91/download30c226fc2712d54e914cbcdab0e6f5c8MD5110/133492024-08-28 20:49:27.892oai:repositorio.ufes.br:10/13349http://repositorio.ufes.brRepositório InstitucionalPUBhttp://repositorio.ufes.br/oai/requestopendoar:21082024-10-15T18:02:30.766043Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) - Universidade Federal do Espírito Santo (UFES)false |
dc.title.none.fl_str_mv |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
dc.title.alternative.none.fl_str_mv |
title.alternative |
title |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
spellingShingle |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora Silva, Paulo Marcos Amaral Melhoramento Vegetal 5-metilcitosina Coffea Cultura de tecidos vegetais Fitohormônios Poliaminas Regeneração in vitro Phytohormones Plant tissue culture Polyamines In vitro regeneration subject.br-rjbn |
title_short |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
title_full |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
title_fullStr |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
title_full_unstemmed |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
title_sort |
The epigenetic and physiologic changes as a trigger for indirect somatic embryogenesis in Coffea canephora |
author |
Silva, Paulo Marcos Amaral |
author_facet |
Silva, Paulo Marcos Amaral |
author_role |
author |
dc.contributor.authorID.none.fl_str_mv |
https://orcid.org/ |
dc.contributor.authorLattes.none.fl_str_mv |
http://lattes.cnpq.br/2853274010679824 |
dc.contributor.advisor1.fl_str_mv |
Clarindo, Wellington Ronildo |
dc.contributor.advisor1ID.fl_str_mv |
https://orcid.org/0000000288268620 |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/0339970047422716 |
dc.contributor.author.fl_str_mv |
Silva, Paulo Marcos Amaral |
dc.contributor.referee1.fl_str_mv |
Fontes, Milene Miranda Praca |
dc.contributor.referee1ID.fl_str_mv |
https://orcid.org/0000000177389518 |
dc.contributor.referee1Lattes.fl_str_mv |
http://lattes.cnpq.br/1372644511398549 |
dc.contributor.referee2.fl_str_mv |
Mendonca, Maria Andreia Correa |
dc.contributor.referee2ID.fl_str_mv |
https://orcid.org/0000-0002-3798-3309 |
dc.contributor.referee2Lattes.fl_str_mv |
http://lattes.cnpq.br/3412339192891083 |
dc.contributor.referee3.fl_str_mv |
Sanglard, Natalia Arruda |
dc.contributor.referee3ID.fl_str_mv |
https://orcid.org/0000-0003-3219-8616 |
dc.contributor.referee3Lattes.fl_str_mv |
http://lattes.cnpq.br/7809043431671687 |
dc.contributor.referee4.fl_str_mv |
Carrijo, Tatiana Tavares |
dc.contributor.referee4ID.fl_str_mv |
https://orcid.org/0000000283660738 |
dc.contributor.referee4Lattes.fl_str_mv |
http://lattes.cnpq.br/0479854777557016 |
contributor_str_mv |
Clarindo, Wellington Ronildo Fontes, Milene Miranda Praca Mendonca, Maria Andreia Correa Sanglard, Natalia Arruda Carrijo, Tatiana Tavares |
dc.subject.cnpq.fl_str_mv |
Melhoramento Vegetal |
topic |
Melhoramento Vegetal 5-metilcitosina Coffea Cultura de tecidos vegetais Fitohormônios Poliaminas Regeneração in vitro Phytohormones Plant tissue culture Polyamines In vitro regeneration subject.br-rjbn |
dc.subject.por.fl_str_mv |
5-metilcitosina Coffea Cultura de tecidos vegetais Fitohormônios Poliaminas Regeneração in vitro Phytohormones Plant tissue culture Polyamines In vitro regeneration |
dc.subject.br-rjbn.none.fl_str_mv |
subject.br-rjbn |
description |
Indirect somatic embryogenesis (ISE) establishment for Coffea species started in the 1970s. Since then, intraspecific variations in the morphogenic pathway have been reported, despite the meticulous standardization of the environmental conditions in vitro. Several authors have suggested that these variations are the result of genetic, epigenetic and/or physiological events, highlighting the need for investigations to know the respective causes. Along these lines, this study aimed to investigate and describe, for the first time, the changes in and influence of epigenetic and physiological aspects during cell proliferation and somatic embryo regeneration from cell aggregate suspensions of Coffea canephora. The cell proliferation step was characterized by increase in cell mass in all subcultures; relatively low mean values of global 5-methylcytosine (5-mC%), abscisic acid (ABA) and indole-3-acetic acid (IAA); high mean value of 1-aminocyclopropane 1-carboxylic acid (ACC, an ethylene precursor); and increases followed by decreases in spermidine (Spd, a polyamine) levels. With regard to the in vitro conditions, these aspects promoted the cell proliferation, showing that the epigenome and metabolome are fundamental for the first morphogenic moment of ISE. In turn, the second ISE moment is correlated with epigenetic and physiological changes. The competence acquisition, determination and cell differentiation steps were marked by increases in mean values of 5-mC%, IAA and ABA and decreases in ACC and Spd, evincing that these epigenetic and physiological changes are the triggers for regeneration and maturation of somatic embryos. Therefore, dynamic and coordinated epigenetic and physiological changes directly affect the two morphogenic moments of C. canephora ISE. |
publishDate |
2019 |
dc.date.issued.fl_str_mv |
2019-07-15 |
dc.date.accessioned.fl_str_mv |
2024-05-29T22:11:00Z |
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2024-05-29T22:11:00Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/doctoralThesis |
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doctoralThesis |
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http://repositorio.ufes.br/handle/10/13349 |
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http://repositorio.ufes.br/handle/10/13349 |
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por |
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info:eu-repo/semantics/openAccess |
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openAccess |
dc.format.none.fl_str_mv |
Text |
dc.publisher.none.fl_str_mv |
Universidade Federal do Espírito Santo Doutorado em Genética e Melhoramento |
dc.publisher.program.fl_str_mv |
Programa de Pós-Graduação em Genética e Melhoramento |
dc.publisher.initials.fl_str_mv |
UFES |
dc.publisher.country.fl_str_mv |
BR |
dc.publisher.department.fl_str_mv |
Centro de Ciências Agrárias e Engenharias |
publisher.none.fl_str_mv |
Universidade Federal do Espírito Santo Doutorado em Genética e Melhoramento |
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Repositório Institucional da Universidade Federal do Espírito Santo (riUfes) |
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