Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico

Detalhes bibliográficos
Autor(a) principal: Abreu, Paolla Mendes do Vale de
Data de Publicação: 2015
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)
Texto Completo: http://repositorio.ufes.br/handle/10/1888
Resumo: Carica papaya L. is one of the most cultivated and consumed fruits in tropical and subtropical regions worldwide. Brazil is among the largest producers and exporters of papaya fruit. The pre-harvest diseases of papaya plants are the main limitation for fruit production. Papaya sticky disease is caused by the Papaya meleira virus (PMeV). It is a commercially important pathology in papaya culture potentially causing the complete loss of fruit production. Despite of this, little is known about the papaya interaction and response mechanisms against PMeV and there is not a papaya variety resistant to the virus. It is known that papaya 20S proteasome subunit levels of increase during PMeV infection, suggesting that proteolysis is an important feature of the plant defense response mechanisms. To date, 10,598 plant microRNAs have been identified in the Plant miRNAs Database (name of the DB), but only two microRNAs, miR162 and miR403, are from papaya. In this study, plant microRNA sequences were used to search for putative microRNAs in the papaya genome. A total of 462 microRNAs, representing 72 microRNA families, were predicted to occur in papaya. Out of these, the expression of 11 microRNAs, whose targets are known to be involved in 20S and 26S proteasomal degradation and in other stress response pathways, was estimated using real-time PCR, comparing healthy and infected papaya leaf tissues. The expression of miRNAs involved in proteasomal degradation increased in response to very low levels of PMeV titre and decreased as the viral titre increased. In contrast, biotic stress-related miRNAs levels decreased in papaya tissues infected with low virus titre and increased at high PMeV levels. Corroborating this results, analysed target genes for this miRNAs had their expression modulated in a dependent manner. With the results, some miRNAs were identified as relevant to the biotechnological application. This study represents a comprehensive prediction of miRNAs in papaya. The data presented here might help to complement the available molecular and genomic tools for the study of papaya. The differential expression of specific miRNAs and the modulation of their target genes will be helpful for understanding the particular interaction of PMeV and papaya responsible of disease development.
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spelling Fernandes, Patrícia Machado BuenoAbreu, Paolla Mendes do Vale deZanettini, Maria Helena BodaneseSilva, Maite Vaslin de FreitasRodrigues, Silas PessiniFernandes, Antônio Alberto Ribeiro2016-05-16T17:12:06Z2016-06-24T06:00:05Z2015-02-262015-02-26Carica papaya L. is one of the most cultivated and consumed fruits in tropical and subtropical regions worldwide. Brazil is among the largest producers and exporters of papaya fruit. The pre-harvest diseases of papaya plants are the main limitation for fruit production. Papaya sticky disease is caused by the Papaya meleira virus (PMeV). It is a commercially important pathology in papaya culture potentially causing the complete loss of fruit production. Despite of this, little is known about the papaya interaction and response mechanisms against PMeV and there is not a papaya variety resistant to the virus. It is known that papaya 20S proteasome subunit levels of increase during PMeV infection, suggesting that proteolysis is an important feature of the plant defense response mechanisms. To date, 10,598 plant microRNAs have been identified in the Plant miRNAs Database (name of the DB), but only two microRNAs, miR162 and miR403, are from papaya. In this study, plant microRNA sequences were used to search for putative microRNAs in the papaya genome. A total of 462 microRNAs, representing 72 microRNA families, were predicted to occur in papaya. Out of these, the expression of 11 microRNAs, whose targets are known to be involved in 20S and 26S proteasomal degradation and in other stress response pathways, was estimated using real-time PCR, comparing healthy and infected papaya leaf tissues. The expression of miRNAs involved in proteasomal degradation increased in response to very low levels of PMeV titre and decreased as the viral titre increased. In contrast, biotic stress-related miRNAs levels decreased in papaya tissues infected with low virus titre and increased at high PMeV levels. Corroborating this results, analysed target genes for this miRNAs had their expression modulated in a dependent manner. With the results, some miRNAs were identified as relevant to the biotechnological application. This study represents a comprehensive prediction of miRNAs in papaya. The data presented here might help to complement the available molecular and genomic tools for the study of papaya. The differential expression of specific miRNAs and the modulation of their target genes will be helpful for understanding the particular interaction of PMeV and papaya responsible of disease development.O mamoeiro (Carica papaya L.) é uma das fruteiras mais cultivadas e o mamão um dos frutos mais consumidos nas regiões tropicais e subtropicais do mundo. O Brasil é um dos maiores produtores mundiais de mamão e está dentre os principais países exportadores. As doenças, no entanto, constituem os principais fatores limitantes da produção. A meleira do mamoeiro, causada pelo Papaya meleira virus (PMeV) é uma doença importante na produção de mamão capaz de causar a perda completa da produção. Apesar disso, pouco se conhece sobre os mecanismos de interação e de resposta do mamoeiro contra o PMeV e ainda não existe no mercado cultivares resistentes a este vírus. Sabe-se que a expressão de proteínas como a subunidade 20S do proteasoma é maior durante a infecção, sugerindo que a proteólise seja um mecanismo importante de resposta de defesa. Atualmente 10.598 microRNAs de plantas estão depositados no banco de dados Plant miRNAs Database, mas somente dois, miR162 e miR403 são codificados especificamente por C. papaya. Neste estudo, sequências conhecidas de microRNAs provenientes de diferentes espécies de plantas foram utilizadas na predição in silico de microRNAs no genoma de mamoeiro. Um total de 462 microRNAs foram preditos, representando 72 famílias de miRNAs conhecidas. A expressão de 11 microRNAs, cujos alvos estão envolvidos na degradação via proteasoma 20S e 26S e em outras vias de resposta a estresse, foi comparada por qRT-PCR em amostras de folhas de plantas sadias e infectadas com PMeV. A expressão de microRNAs envolvidos na degradação de proteínas via proteasoma aumentou em resposta a um baixo acúmulo relativo de PMeV e diminuiu com o aumento do acúmulo relativo viral. Por outro lado, a expressão de microRNAs envolvidos na resposta da planta ao estresse biótico diminuiu em resposta ao baixo acúmulo relativo viral e aumentou com o aumento do acúmulo relativo de PMeV. Os genes descritos como alvos de alguns dos miRNAs tiveram sua expressão modulada de uma maneira dependente. Diante dos resultados, alguns miRNAs foram apontados como importantes para a aplicação biotecnológica. Este estudo representa uma compreensiva predição de microRNAs em mamoeiro. A expressão diferencial de microRNAs específicos e a modulação de seus genes alvos é de grande ajuda para entender a interação particular entre o mamoeiro e o PMeV, responsável pelo desenvolvimento da meleira.CAPESTexthttp://repositorio.ufes.br/handle/10/1888porUniversidade Federal do Espírito SantoDoutorado em BiotecnologiaPrograma de Pós-Graduação em BiotecnologiaUFESBRCentro de Ciências da SaúdeProteasome-ubiquitinMicroRNAsProteasoma-ubiquitinaCarica papayaPmeVMamãoBiotecnologiaBiotecnologia61Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológicoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da Universidade Federal do Espírito Santo (riUfes)instname:Universidade Federal do Espírito Santo (UFES)instacron:UFESCAPESORIGINALTese_defesa_Paolla M. V. Abreu_para capa dura.pdfTese_defesa_Paolla M. V. 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dc.title.none.fl_str_mv Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
title Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
spellingShingle Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
Abreu, Paolla Mendes do Vale de
Proteasome-ubiquitin
MicroRNAs
Proteasoma-ubiquitina
Carica papaya
PmeV
Biotecnologia
Mamão
Biotecnologia
61
title_short Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
title_full Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
title_fullStr Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
title_full_unstemmed Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
title_sort Envolvimento de microRNAs na interação Carica papaya L. e Papaya meleira vírus com potencial biotecnológico
author Abreu, Paolla Mendes do Vale de
author_facet Abreu, Paolla Mendes do Vale de
author_role author
dc.contributor.advisor1.fl_str_mv Fernandes, Patrícia Machado Bueno
dc.contributor.author.fl_str_mv Abreu, Paolla Mendes do Vale de
dc.contributor.referee1.fl_str_mv Zanettini, Maria Helena Bodanese
dc.contributor.referee2.fl_str_mv Silva, Maite Vaslin de Freitas
dc.contributor.referee3.fl_str_mv Rodrigues, Silas Pessini
dc.contributor.referee4.fl_str_mv Fernandes, Antônio Alberto Ribeiro
contributor_str_mv Fernandes, Patrícia Machado Bueno
Zanettini, Maria Helena Bodanese
Silva, Maite Vaslin de Freitas
Rodrigues, Silas Pessini
Fernandes, Antônio Alberto Ribeiro
dc.subject.eng.fl_str_mv Proteasome-ubiquitin
topic Proteasome-ubiquitin
MicroRNAs
Proteasoma-ubiquitina
Carica papaya
PmeV
Biotecnologia
Mamão
Biotecnologia
61
dc.subject.por.fl_str_mv MicroRNAs
Proteasoma-ubiquitina
Carica papaya
PmeV
dc.subject.cnpq.fl_str_mv Biotecnologia
dc.subject.br-rjbn.none.fl_str_mv Mamão
Biotecnologia
dc.subject.udc.none.fl_str_mv 61
description Carica papaya L. is one of the most cultivated and consumed fruits in tropical and subtropical regions worldwide. Brazil is among the largest producers and exporters of papaya fruit. The pre-harvest diseases of papaya plants are the main limitation for fruit production. Papaya sticky disease is caused by the Papaya meleira virus (PMeV). It is a commercially important pathology in papaya culture potentially causing the complete loss of fruit production. Despite of this, little is known about the papaya interaction and response mechanisms against PMeV and there is not a papaya variety resistant to the virus. It is known that papaya 20S proteasome subunit levels of increase during PMeV infection, suggesting that proteolysis is an important feature of the plant defense response mechanisms. To date, 10,598 plant microRNAs have been identified in the Plant miRNAs Database (name of the DB), but only two microRNAs, miR162 and miR403, are from papaya. In this study, plant microRNA sequences were used to search for putative microRNAs in the papaya genome. A total of 462 microRNAs, representing 72 microRNA families, were predicted to occur in papaya. Out of these, the expression of 11 microRNAs, whose targets are known to be involved in 20S and 26S proteasomal degradation and in other stress response pathways, was estimated using real-time PCR, comparing healthy and infected papaya leaf tissues. The expression of miRNAs involved in proteasomal degradation increased in response to very low levels of PMeV titre and decreased as the viral titre increased. In contrast, biotic stress-related miRNAs levels decreased in papaya tissues infected with low virus titre and increased at high PMeV levels. Corroborating this results, analysed target genes for this miRNAs had their expression modulated in a dependent manner. With the results, some miRNAs were identified as relevant to the biotechnological application. This study represents a comprehensive prediction of miRNAs in papaya. The data presented here might help to complement the available molecular and genomic tools for the study of papaya. The differential expression of specific miRNAs and the modulation of their target genes will be helpful for understanding the particular interaction of PMeV and papaya responsible of disease development.
publishDate 2015
dc.date.submitted.none.fl_str_mv 2015-02-26
dc.date.issued.fl_str_mv 2015-02-26
dc.date.accessioned.fl_str_mv 2016-05-16T17:12:06Z
dc.date.available.fl_str_mv 2016-06-24T06:00:05Z
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dc.publisher.none.fl_str_mv Universidade Federal do Espírito Santo
Doutorado em Biotecnologia
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Biotecnologia
dc.publisher.initials.fl_str_mv UFES
dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Centro de Ciências da Saúde
publisher.none.fl_str_mv Universidade Federal do Espírito Santo
Doutorado em Biotecnologia
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