Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani
Autor(a) principal: | |
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Data de Publicação: | 2010 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
dARK ID: | ark:/38995/0013000002cp0 |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tde/1239 |
Resumo: | Species of Trichoderma are commercially applied as biological control agents against plant fungal pathogens. Their action is based on a set of events, such as the production of antifungal metabolites, competition for space and nutrients and mycoparasitism. However the biocontrol mechanism of the interaction between Trichoderma harzianum and Fusarium solani is not yet understanded at the transcriptome level. This study aimed to initiate the preliminary development of an expressed sequence tag (EST) database for Trichoderma harzianum and thereby gain potentially useful information on Trichoderma gene sequences in order to elucidate the integrated biocontrol mechanism. Partial sequencing of anonymous cDNA clones is a widely used technique for gene identification. A directional cDNA library has been constructed from mycelium of Trichoderma harzianum grown on cell wall isolated from Fusarium solani. 3984 clones have been randomly selected, subjected to single-pass sequencing from the 5 end of the vector, and identified by sequence similarity searches against gene sequences in GenBank fungal database. Of the 3984 mycelium clones, 40.8% exhibit similarity to known genes. Analysis of the identified clones indicated sequence similarity to a broad diversity of genes encoding proteins such as enzymes, structural proteins, and regulatory factors. A significant proportion of genes identified were involved in processes related to mycoparasitism (3,81%), as would be expected in biocontrol fungus. These results present the successful application of EST analysis in the interaction of Trichoderma harzianum and Fusarium solani to provide a preliminary indication of gene expression. |
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ULHOA, Cirano Josehttp://lattes.cnpq.br/8368469162867277SILVA, Roberto do Nascimentohttp://lattes.cnpq.br/5771309284349109http://lattes.cnpq.br/3464666284775598STEINDORFF, Andrei Stecca2014-07-29T15:16:27Z2010-09-092010-02-26STEINDORFF, Andrei Stecca. Construction and analisys of a cDNA library of Trichoderma harzianum grown in presence of Fusarium solani cell wall. 2010. 71 f. Dissertação (Mestrado em Ciências Biolóicas) - Universidade Federal de Goiás, Goiânia, 2010.http://repositorio.bc.ufg.br/tede/handle/tde/1239ark:/38995/0013000002cp0Species of Trichoderma are commercially applied as biological control agents against plant fungal pathogens. Their action is based on a set of events, such as the production of antifungal metabolites, competition for space and nutrients and mycoparasitism. However the biocontrol mechanism of the interaction between Trichoderma harzianum and Fusarium solani is not yet understanded at the transcriptome level. This study aimed to initiate the preliminary development of an expressed sequence tag (EST) database for Trichoderma harzianum and thereby gain potentially useful information on Trichoderma gene sequences in order to elucidate the integrated biocontrol mechanism. Partial sequencing of anonymous cDNA clones is a widely used technique for gene identification. A directional cDNA library has been constructed from mycelium of Trichoderma harzianum grown on cell wall isolated from Fusarium solani. 3984 clones have been randomly selected, subjected to single-pass sequencing from the 5 end of the vector, and identified by sequence similarity searches against gene sequences in GenBank fungal database. Of the 3984 mycelium clones, 40.8% exhibit similarity to known genes. Analysis of the identified clones indicated sequence similarity to a broad diversity of genes encoding proteins such as enzymes, structural proteins, and regulatory factors. A significant proportion of genes identified were involved in processes related to mycoparasitism (3,81%), as would be expected in biocontrol fungus. These results present the successful application of EST analysis in the interaction of Trichoderma harzianum and Fusarium solani to provide a preliminary indication of gene expression.Espécies do gênero Trichoderma são comercialmente aplicadas como agentes de controle biológico contra fungos patógenos de plantas. Sua ação é baseada em diferentes mecanismos como a produção de antibióticos voláteis e não-voláteis, competição por espaço e nutrientes e micoparasitismo. O mecanismo de biocontrole da interação entre Trichoderma harzianum e Fusarium solani ainda não foi explorado ao nível de transcriptoma. Este estudo buscou iniciar o desenvolvimento de uma base de dados de EST (Expressed Sequence Tags) para assim obter informações úteis nas sequências de Trichoderma harzianum e entender melhor as vias integradas do mecanismo de biocontrole. Uma biblioteca direcional de cDNA foi construída a partir do micélio de Trichoderma harzianum crescido em parede celular isolada de Fusarium solani. 3984 clones foram selecionados aleatoriamente, submetidos ao seqüenciamento da região 5 do vetor e identificados por similaridade contra a base de dados de seqüências de fungos GenBank. Dentre os 3984 clones, 40,8% mostraram similaridade com genes conhecidos e descritos na literatura. Análises dos genes identificados indicam similaridade com uma grande diversidade de genes que codificam para enzimas, proteínas estruturais e fatores de regulação. Uma proporção significante dos genes identificados está envolvida com processos relacionados ao icoparasitismo (3,81%), como esperado para um fungo envolvido no controle biológico. Estes resultados mostram uma aplicação bem sucedida da análise de ESTs na interação entre Trichoderma harzianum e Fusarium solani e dar uma sugetão da expressão gênica.Made available in DSpace on 2014-07-29T15:16:27Z (GMT). No. of bitstreams: 1 dissertacao andrei.pdf: 2548450 bytes, checksum: dedf19335cba3686a528075fb5da8300 (MD5) Previous issue date: 2010-02-26application/pdfhttp://repositorio.bc.ufg.br/TEDE/retrieve/3895/dissertacao%20andrei.pdf.jpgporUniversidade Federal de GoiásMestrado em BiologiaUFGBRCiências BiolóicasTrichoderma harzianumFusarium solanitranscriptomamicoparasitismoTrichoderma harzianumFusarium solanitranscriptomemicoparasitismCNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICAConstrução e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solaniConstruction and analisys of a cDNA library of Trichoderma harzianum grown in presence of Fusarium solani cell wallinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGORIGINALdissertacao andrei.pdfapplication/pdf2548450http://repositorio.bc.ufg.br/tede/bitstreams/68f67429-92e4-4e92-b3e6-be73768ca9e8/downloaddedf19335cba3686a528075fb5da8300MD51THUMBNAILdissertacao andrei.pdf.jpgdissertacao andrei.pdf.jpgGenerated Thumbnailimage/jpeg1943http://repositorio.bc.ufg.br/tede/bitstreams/655b8628-32f4-4b24-9535-eefaa2ef1231/downloadcc73c4c239a4c332d642ba1e7c7a9fb2MD52tde/12392014-07-30 03:09:13.563open.accessoai:repositorio.bc.ufg.br:tde/1239http://repositorio.bc.ufg.br/tedeRepositório InstitucionalPUBhttp://repositorio.bc.ufg.br/oai/requesttasesdissertacoes.bc@ufg.bropendoar:2014-07-30T06:09:13Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)false |
dc.title.por.fl_str_mv |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
dc.title.alternative.eng.fl_str_mv |
Construction and analisys of a cDNA library of Trichoderma harzianum grown in presence of Fusarium solani cell wall |
title |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
spellingShingle |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani STEINDORFF, Andrei Stecca Trichoderma harzianum Fusarium solani transcriptoma micoparasitismo Trichoderma harzianum Fusarium solani transcriptome micoparasitism CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA |
title_short |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
title_full |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
title_fullStr |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
title_full_unstemmed |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
title_sort |
Construção e análise de uma biblioteca de cDNA de Trichoderma harzianum crescido na presença de parede celular de Fusarium solani |
author |
STEINDORFF, Andrei Stecca |
author_facet |
STEINDORFF, Andrei Stecca |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
ULHOA, Cirano Jose |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/8368469162867277 |
dc.contributor.advisor-co1.fl_str_mv |
SILVA, Roberto do Nascimento |
dc.contributor.advisor-co1Lattes.fl_str_mv |
http://lattes.cnpq.br/5771309284349109 |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/3464666284775598 |
dc.contributor.author.fl_str_mv |
STEINDORFF, Andrei Stecca |
contributor_str_mv |
ULHOA, Cirano Jose SILVA, Roberto do Nascimento |
dc.subject.por.fl_str_mv |
Trichoderma harzianum Fusarium solani transcriptoma micoparasitismo |
topic |
Trichoderma harzianum Fusarium solani transcriptoma micoparasitismo Trichoderma harzianum Fusarium solani transcriptome micoparasitism CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA |
dc.subject.eng.fl_str_mv |
Trichoderma harzianum Fusarium solani transcriptome micoparasitism |
dc.subject.cnpq.fl_str_mv |
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA |
description |
Species of Trichoderma are commercially applied as biological control agents against plant fungal pathogens. Their action is based on a set of events, such as the production of antifungal metabolites, competition for space and nutrients and mycoparasitism. However the biocontrol mechanism of the interaction between Trichoderma harzianum and Fusarium solani is not yet understanded at the transcriptome level. This study aimed to initiate the preliminary development of an expressed sequence tag (EST) database for Trichoderma harzianum and thereby gain potentially useful information on Trichoderma gene sequences in order to elucidate the integrated biocontrol mechanism. Partial sequencing of anonymous cDNA clones is a widely used technique for gene identification. A directional cDNA library has been constructed from mycelium of Trichoderma harzianum grown on cell wall isolated from Fusarium solani. 3984 clones have been randomly selected, subjected to single-pass sequencing from the 5 end of the vector, and identified by sequence similarity searches against gene sequences in GenBank fungal database. Of the 3984 mycelium clones, 40.8% exhibit similarity to known genes. Analysis of the identified clones indicated sequence similarity to a broad diversity of genes encoding proteins such as enzymes, structural proteins, and regulatory factors. A significant proportion of genes identified were involved in processes related to mycoparasitism (3,81%), as would be expected in biocontrol fungus. These results present the successful application of EST analysis in the interaction of Trichoderma harzianum and Fusarium solani to provide a preliminary indication of gene expression. |
publishDate |
2010 |
dc.date.available.fl_str_mv |
2010-09-09 |
dc.date.issued.fl_str_mv |
2010-02-26 |
dc.date.accessioned.fl_str_mv |
2014-07-29T15:16:27Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
STEINDORFF, Andrei Stecca. Construction and analisys of a cDNA library of Trichoderma harzianum grown in presence of Fusarium solani cell wall. 2010. 71 f. Dissertação (Mestrado em Ciências Biolóicas) - Universidade Federal de Goiás, Goiânia, 2010. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tde/1239 |
dc.identifier.dark.fl_str_mv |
ark:/38995/0013000002cp0 |
identifier_str_mv |
STEINDORFF, Andrei Stecca. Construction and analisys of a cDNA library of Trichoderma harzianum grown in presence of Fusarium solani cell wall. 2010. 71 f. Dissertação (Mestrado em Ciências Biolóicas) - Universidade Federal de Goiás, Goiânia, 2010. ark:/38995/0013000002cp0 |
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http://repositorio.bc.ufg.br/tede/handle/tde/1239 |
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por |
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Universidade Federal de Goiás |
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Mestrado em Biologia |
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UFG |
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BR |
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Ciências Biolóicas |
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Universidade Federal de Goiás |
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