Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum

Detalhes bibliográficos
Autor(a) principal: Silva, Lourival de Almeida
Data de Publicação: 2015
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFG
dARK ID: ark:/38995/001300000677s
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/4531
Resumo: Leishmaniasis is a neglected tropical disease responsible for physical, economic and social damages. Even though malaria is not classified as a neglected tropical disease, is responsible for high morbidity and mortality, especially in African countries. Current treatments for both diseases face several drawbacks, including the evolution of drugresistant parasites, the high cost of major drugs and the high toxicity of others. For these reasons, there is an urgent need to develop new drugs that minimize these downsides and, consequently, help eradicate these diseases. To overcome these difficulties, both academics and pharmaceutical companies are increasingly employing the so-called “drug repositioning strategy”. Drug repositioning aims to find new applications for drugs approved for other indications, and has proven valuable for decreasing research costs as well as to decrease the time required to market the "new" drug. In the present study, we used bioinformatics to identify and analyze molecular targets of the energy metabolism of Leishmania spp and of the P. falciparum apicoplast. The energy metabolism of Leishmania and the apicoplast metabolism have various enzymes that can be targeted by specific drugs, leading to lower toxicity and more promising therapies for humans. Using the TDR Targets database, we were able to identify 94 genes and 93 Leishmania energy metabolism targets. We identified 44 positive targets in these databases, and for 11 of these targets we found drugs already approved for use in humans. We used a similar strategy to identify antimalarial drugs that acted specifically against the apicoplast metabolism. The GeneDB database of the P. falciparum genome was used to compile a list of 600 proteins with apicoplast signal peptides. Each of these proteins was treated as a potential drug target and its predicted sequence was used to interrogate three different open access databases (DB TTD, DrugBank and STITCH ). We identified many drugs with the potential to interact with 47 peptides allegedly involved in apicoplast biology in P. falciparum. Fifteen of these hypothetical targets are predicted to interact with drugs are already approved for clinical use, but were never evaluated against malaria parasites. Our results suggest that the drugs identified here show potential activity against leishmania parasite and malaria, but need experimental validation to confirm their effectiveness.
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spelling Bezerra, José Clecildo Barretohttp://lattes.cnpq.br/9491755585617846Cravo, Pedro Vítor LemosCastro, Ana Maria deBezerra, José Clecildo BarretoSilva, Cláudio Carlos daAndrade, Carolina HortaLacerda, Elisângela de Paula SilveiraBorges, Clayton Luizhttp://lattes.cnpq.br/6678095287288316Silva, Lourival de Almeida2015-05-18T11:02:27Z2015-02-27SILVA, L. A. Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum. 2015. 97 f. Tese (Doutorado em Medicina Tropical e Saúde Publica) - Universidade Federal de Goiás, Goiânia, 2015.http://repositorio.bc.ufg.br/tede/handle/tede/4531ark:/38995/001300000677sLeishmaniasis is a neglected tropical disease responsible for physical, economic and social damages. Even though malaria is not classified as a neglected tropical disease, is responsible for high morbidity and mortality, especially in African countries. Current treatments for both diseases face several drawbacks, including the evolution of drugresistant parasites, the high cost of major drugs and the high toxicity of others. For these reasons, there is an urgent need to develop new drugs that minimize these downsides and, consequently, help eradicate these diseases. To overcome these difficulties, both academics and pharmaceutical companies are increasingly employing the so-called “drug repositioning strategy”. Drug repositioning aims to find new applications for drugs approved for other indications, and has proven valuable for decreasing research costs as well as to decrease the time required to market the "new" drug. In the present study, we used bioinformatics to identify and analyze molecular targets of the energy metabolism of Leishmania spp and of the P. falciparum apicoplast. The energy metabolism of Leishmania and the apicoplast metabolism have various enzymes that can be targeted by specific drugs, leading to lower toxicity and more promising therapies for humans. Using the TDR Targets database, we were able to identify 94 genes and 93 Leishmania energy metabolism targets. We identified 44 positive targets in these databases, and for 11 of these targets we found drugs already approved for use in humans. We used a similar strategy to identify antimalarial drugs that acted specifically against the apicoplast metabolism. The GeneDB database of the P. falciparum genome was used to compile a list of 600 proteins with apicoplast signal peptides. Each of these proteins was treated as a potential drug target and its predicted sequence was used to interrogate three different open access databases (DB TTD, DrugBank and STITCH ). We identified many drugs with the potential to interact with 47 peptides allegedly involved in apicoplast biology in P. falciparum. Fifteen of these hypothetical targets are predicted to interact with drugs are already approved for clinical use, but were never evaluated against malaria parasites. Our results suggest that the drugs identified here show potential activity against leishmania parasite and malaria, but need experimental validation to confirm their effectiveness.As leishmanioses são parasitoses negligenciadas responsáveis por prejuízos físicos, econômicos e sociais. A malária, embora não seja classificada como negligenciada, é responsável por altos índices de morbidade e mortalidade, principalmente nos países africanos. Ao longo dos anos, o tratamento dos infectados tem sido a forma mais eficaz de controle dessas endemias. Entretanto, os efeitos tóxicos, o alto custo dos fármacos e a resistência dos parasitos têm sido os maiores desafios enfrentados pela terapêutica das leishmanioses e da malária. Sendo assim, é urgente a necessidade de desenvolver novos fármacos que minimizem esses transtornos e contribuam para erradicação dessas parasitoses. Diante disso, laboratórios acadêmicos, governos e organizações não governamentais têm apoiado projetos voltados para o reposicionamento de fármacos aprovados com vistas a reduzir custos e tempo de produção de novos antiparasitários. No presente trabalho, utilizamos a bioinformática para identificar, buscar e analisar alvos moleculares do metabolismo energético de Leishmania spp e do apicoplasto de P. falciparum, visando o reposicionamento in silico de fármacos. Utilizando a base de dados TDR Targets, identificamos 94 genes e 93 alvos do metabolismo energético de Leishmania. Em seguida, utilizando a sequência peptídica de cada alvo, interrogamos as bases de dados Drug Bank e TTD na busca de fármacos. Nossa busca resultou em 44 alvos positivos, dos quais 11 interagiam com 15 fármacos aprovados para uso em humanos. Utilizamos estratégia semelhante para identificar fármacos antimaláricos que atuassem especificamente contra o metabolismo do apicoplasto. A base de dados GeneDB do genoma de P. falciparum foi usada para compilar uma lista de cerca de 600 proteínas com peptídeos sinais do apicoplasto. Cada uma dessas proteínas foi tratada como potencial alvo de fármaco e sua sequência prevista foi usada para interrogar três diferentes bases de dados de acesso livre (TT DB, DrugBank e STITCH ) Identificamos fármacos com potencial de interagir com 47 peptídeos supostamente envolvidos na biologia do apicoplasto do P. falciparum. Quinze desses alvos hipotéticos são previstos interagir com fármacos já aprovados para uso clínico, mas que nunca foram avaliados contra os parasitos da malária. Os nossos resultados sugerem que os fármacos aqui identificados apresentam potencial para tratamentos das leishmanioses e da malária, mas que necessitam de validação experimental para confirmar sua eficácia.Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2015-05-18T10:58:40Z No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Tese - Lourival de Almeida Silva - 2015.pdf: 2573495 bytes, checksum: 0eee1e3d91463a3f757ecdc4fe7126ce (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2015-05-18T11:02:27Z (GMT) No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Tese - Lourival de Almeida Silva - 2015.pdf: 2573495 bytes, checksum: 0eee1e3d91463a3f757ecdc4fe7126ce (MD5)Made available in DSpace on 2015-05-18T11:02:27Z (GMT). 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dc.title.por.fl_str_mv Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
dc.title.alternative.por.fl_str_mv In silico drug repositioning for neglected tropical diseases with emphasis on energy metabolism of Leishmania spp and Plasmodium falciparum apicoplast
title Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
spellingShingle Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
Silva, Lourival de Almeida
Reposicionamento de fármacos
Metabolismo energético
Leishmania spp
Apicoplasto
Plasmodium falciparum
Drug Repositioning
Energy metabolismo
Leishmania spp
Apicoplast
Plasmodium falciparum
CIENCIAS DA SAUDE
title_short Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
title_full Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
title_fullStr Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
title_full_unstemmed Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
title_sort Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum
author Silva, Lourival de Almeida
author_facet Silva, Lourival de Almeida
author_role author
dc.contributor.advisor1.fl_str_mv Bezerra, José Clecildo Barreto
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/9491755585617846
dc.contributor.advisor-co1.fl_str_mv Cravo, Pedro Vítor Lemos
dc.contributor.advisor-co2.fl_str_mv Castro, Ana Maria de
dc.contributor.referee1.fl_str_mv Bezerra, José Clecildo Barreto
dc.contributor.referee2.fl_str_mv Silva, Cláudio Carlos da
dc.contributor.referee3.fl_str_mv Andrade, Carolina Horta
dc.contributor.referee4.fl_str_mv Lacerda, Elisângela de Paula Silveira
dc.contributor.referee5.fl_str_mv Borges, Clayton Luiz
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/6678095287288316
dc.contributor.author.fl_str_mv Silva, Lourival de Almeida
contributor_str_mv Bezerra, José Clecildo Barreto
Cravo, Pedro Vítor Lemos
Castro, Ana Maria de
Bezerra, José Clecildo Barreto
Silva, Cláudio Carlos da
Andrade, Carolina Horta
Lacerda, Elisângela de Paula Silveira
Borges, Clayton Luiz
dc.subject.por.fl_str_mv Reposicionamento de fármacos
Metabolismo energético
Leishmania spp
Apicoplasto
topic Reposicionamento de fármacos
Metabolismo energético
Leishmania spp
Apicoplasto
Plasmodium falciparum
Drug Repositioning
Energy metabolismo
Leishmania spp
Apicoplast
Plasmodium falciparum
CIENCIAS DA SAUDE
dc.subject.eng.fl_str_mv Plasmodium falciparum
Drug Repositioning
Energy metabolismo
Leishmania spp
Apicoplast
Plasmodium falciparum
dc.subject.cnpq.fl_str_mv CIENCIAS DA SAUDE
description Leishmaniasis is a neglected tropical disease responsible for physical, economic and social damages. Even though malaria is not classified as a neglected tropical disease, is responsible for high morbidity and mortality, especially in African countries. Current treatments for both diseases face several drawbacks, including the evolution of drugresistant parasites, the high cost of major drugs and the high toxicity of others. For these reasons, there is an urgent need to develop new drugs that minimize these downsides and, consequently, help eradicate these diseases. To overcome these difficulties, both academics and pharmaceutical companies are increasingly employing the so-called “drug repositioning strategy”. Drug repositioning aims to find new applications for drugs approved for other indications, and has proven valuable for decreasing research costs as well as to decrease the time required to market the "new" drug. In the present study, we used bioinformatics to identify and analyze molecular targets of the energy metabolism of Leishmania spp and of the P. falciparum apicoplast. The energy metabolism of Leishmania and the apicoplast metabolism have various enzymes that can be targeted by specific drugs, leading to lower toxicity and more promising therapies for humans. Using the TDR Targets database, we were able to identify 94 genes and 93 Leishmania energy metabolism targets. We identified 44 positive targets in these databases, and for 11 of these targets we found drugs already approved for use in humans. We used a similar strategy to identify antimalarial drugs that acted specifically against the apicoplast metabolism. The GeneDB database of the P. falciparum genome was used to compile a list of 600 proteins with apicoplast signal peptides. Each of these proteins was treated as a potential drug target and its predicted sequence was used to interrogate three different open access databases (DB TTD, DrugBank and STITCH ). We identified many drugs with the potential to interact with 47 peptides allegedly involved in apicoplast biology in P. falciparum. Fifteen of these hypothetical targets are predicted to interact with drugs are already approved for clinical use, but were never evaluated against malaria parasites. Our results suggest that the drugs identified here show potential activity against leishmania parasite and malaria, but need experimental validation to confirm their effectiveness.
publishDate 2015
dc.date.accessioned.fl_str_mv 2015-05-18T11:02:27Z
dc.date.issued.fl_str_mv 2015-02-27
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv SILVA, L. A. Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum. 2015. 97 f. Tese (Doutorado em Medicina Tropical e Saúde Publica) - Universidade Federal de Goiás, Goiânia, 2015.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/4531
dc.identifier.dark.fl_str_mv ark:/38995/001300000677s
identifier_str_mv SILVA, L. A. Reposicionamento in silico de fármacos para doenças negligenciadas com ênfase no metabolismo energético de Leishmania spp e apicoplasto de Plasmodium falciparum. 2015. 97 f. Tese (Doutorado em Medicina Tropical e Saúde Publica) - Universidade Federal de Goiás, Goiânia, 2015.
ark:/38995/001300000677s
url http://repositorio.bc.ufg.br/tede/handle/tede/4531
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 6085308344741430434
dc.relation.confidence.fl_str_mv 600
600
600
dc.relation.department.fl_str_mv -7769011444564556288
dc.relation.cnpq.fl_str_mv 8765449414823306929
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Medicina Tropical e Saúde Publica (IPTSP)
dc.publisher.initials.fl_str_mv UFG
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dc.publisher.department.fl_str_mv Instituto de Patologia Tropical e Saúde Pública - IPTSP (RG)
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