Divergência genética e predição de valores genotípicos em soja
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Tipo de documento: | Tese |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/3884 |
Resumo: | Soybean breeding programs practice selection of high genetic value genotypes with two main objectives: a) to use them as parents in the hybridization process (first stage of the program), and b) to indicate them as new cultivars (final stage of the program). In this context, a first study used microsatellite markers (SSR) to assess the genetic diversity of soybean germplasm adapted to the Brazilian conditions. The experimental material consisted of 192 accessions, which included both introductions and Brazilian germplasm. The genetic divergence was assessed by descriptive analysis and the Rogers-W genetic distance. A total of 222 alleles were identified in the 37 genotyped loci, with an average of six alleles and a range of 2 to 14 alleles per locus. The genotypes were clustered according to the origin of the germplasm, and resulted in two groups: one group formed by introductions and other by Brazilian genotypes. Eighty five percent of the genetic distances estimates were above 0.70, suggesting that the assessed germplasm has good potential for hybridization in soybean breeding programs. It was concluded that the SSR markers are useful to identify divergent genotypic groups, as well as genotypic combinations with high genetic variability. It also became clear that the use of introduced germplasm ensures the incorporation of alleles necessary to increase the genetic base of soybeans and, consequently, the variability needed for the selective process. In a second study, the mixed model approach was used to assess some strategies of estimation and prediction of genotypic values for grain yield in the soybean regional yield trials. A total of 111 genotypes classified into three maturity groups were sown in up to 23 experiments in Central Brazil. The experiments were carried out in randomized complete block designs, with three replications. The biometrical analyses followed the fixed model and mixed model approaches, in the latter case assuming the genotypic effects as random. In the mixed model approach, analyses were made with or without information from the relationship estimates obtained either by genealogy or SSR markers, arranged in a genotypic covariance matrix (G). Also, in a context of spatial analysis, different structures were used in the residual covariance matrix (R) for each mixed model adjusted. The following conclusions were obtained: i) the fixed model analysis is adequate to estimate genotypic values in soybean trials with balanced data and orthogonal design; ii) under such conditions and intermediate to low heritability, the inclusion of relationship information associated to G matrix, although does not ensure the best fit models, improves the precision in predicting genotypic values; iii) the use of spatial structures associated to R matrix, in presence of the residual autocorrelation, improves the goodness of model fit to the data; and, iv) the choice of model for the analysis does not change the ranking of the genotypes in high heritability situations and, therefore, does not impact significantly on the selection of superior genotypes. |
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Duarte, João Batistahttp://lattes.cnpq.br/4117228759548186Duarte, João BatistaSilva Filho, João Luis daToledo, José Francisco Ferraz deChaves, Lázaro JoséCoelho, Alexandre Siqueira Guedeshttp://lattes.cnpq.br/3420617931960375Godoi, Cláudio Roberto Cardoso de2015-01-16T13:48:33Z2014-05-07GODOI, Cláudio Roberto Cardoso de. Divergência genética e predição de valores genotípicos em soja. 2014. 108 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/3884Soybean breeding programs practice selection of high genetic value genotypes with two main objectives: a) to use them as parents in the hybridization process (first stage of the program), and b) to indicate them as new cultivars (final stage of the program). In this context, a first study used microsatellite markers (SSR) to assess the genetic diversity of soybean germplasm adapted to the Brazilian conditions. The experimental material consisted of 192 accessions, which included both introductions and Brazilian germplasm. The genetic divergence was assessed by descriptive analysis and the Rogers-W genetic distance. A total of 222 alleles were identified in the 37 genotyped loci, with an average of six alleles and a range of 2 to 14 alleles per locus. The genotypes were clustered according to the origin of the germplasm, and resulted in two groups: one group formed by introductions and other by Brazilian genotypes. Eighty five percent of the genetic distances estimates were above 0.70, suggesting that the assessed germplasm has good potential for hybridization in soybean breeding programs. It was concluded that the SSR markers are useful to identify divergent genotypic groups, as well as genotypic combinations with high genetic variability. It also became clear that the use of introduced germplasm ensures the incorporation of alleles necessary to increase the genetic base of soybeans and, consequently, the variability needed for the selective process. In a second study, the mixed model approach was used to assess some strategies of estimation and prediction of genotypic values for grain yield in the soybean regional yield trials. A total of 111 genotypes classified into three maturity groups were sown in up to 23 experiments in Central Brazil. The experiments were carried out in randomized complete block designs, with three replications. The biometrical analyses followed the fixed model and mixed model approaches, in the latter case assuming the genotypic effects as random. In the mixed model approach, analyses were made with or without information from the relationship estimates obtained either by genealogy or SSR markers, arranged in a genotypic covariance matrix (G). Also, in a context of spatial analysis, different structures were used in the residual covariance matrix (R) for each mixed model adjusted. The following conclusions were obtained: i) the fixed model analysis is adequate to estimate genotypic values in soybean trials with balanced data and orthogonal design; ii) under such conditions and intermediate to low heritability, the inclusion of relationship information associated to G matrix, although does not ensure the best fit models, improves the precision in predicting genotypic values; iii) the use of spatial structures associated to R matrix, in presence of the residual autocorrelation, improves the goodness of model fit to the data; and, iv) the choice of model for the analysis does not change the ranking of the genotypes in high heritability situations and, therefore, does not impact significantly on the selection of superior genotypes.Os programas de melhoramento de soja visam à seleção de genótipos de alto valor genético, com a finalidade de uso principalmente em duas de suas etapas: a) como genitores no processo de hibridação (fase inicial); e, b) para indicação como nova cultivar (fase final). Nesse contexto, num primeiro estudo avaliou-se, por meio de marcadores microssatélites (SSR), a diversidade genética em germoplasma de soja adaptado às condições brasileiras. O material experimental constituiu-se de 192 acessos, entre introduções e germoplasma de origem nacional. Na avaliação da divergência genética, considerou-se a análise descritiva e a distância genética de Rogers-W. Nos 37 locos genotipados, identificaram-se 222 alelos, com média de seis alelos por loco e variação de 2 a 14 alelos. O agrupamento dos genótipos mostrou-se associado à origem do germoplasma, resultando em dois grupos: um introduzido e outro brasileiro. Das estimativas de distâncias genéticas obtidas, 85% foram superiores a 0,70, indicando bom potencial do germoplasma para hibridações em programas de melhoramento da soja. Concluiu-se que os marcadores SSR são úteis na identificação de grupos genotípicos divergentes, bem como de combinações de alta variabilidade genética. Ademais, o uso de germoplasma introduzido garante a incorporação de alelos necessários à ampliação da base genética da espécie e, consequentemente, da variabilidade necessária para uso no processo seletivo. Num segundo estudo, no contexto da análise de modelos mistos, avaliaram-se estratégias de estimação e predição de valores genotípicos para produtividade de grãos, a partir de ensaios de competição final de linhagens de soja. Os genótipos, em número de 111 e classificados em três grupos de maturação, foram semeados em até 23 experimentos conduzidos na região central do Brasil. Os experimentos foram conduzidos no delineamento de blocos completos casualizados, com três repetições. Nas análises biométricas adotaram-se as abordagens de modelo fixo e de modelo misto, neste caso, assumindo-se efeitos genotípicos como aleatórios. Na última abordagem, consideraram-se ainda análises com ou sem uso da informação de parentesco genético, obtida a partir de genealogias ou por marcadores SSR, e associada à matriz de covariâncias dos efeitos aleatórios (G). Para cada modelo, num contexto de análise espacial, adotaram-se também distintas estruturas para a matriz de covariâncias residuais (R). Concluiu-se, então, que: i) a análise com modelo fixo é adequada para estimar efeitos genotípicos em soja, sob condições de balanceamento dos dados e ortogonalidade do delineamento; ii) sob tais condições, a inclusão da informação de parentesco associada à matriz G, embora não garanta melhor ajuste aos modelos, sob herdabilidade moderada ou baixa, melhora a precisão das predições de valores genotípicos; iii) o uso de estruturas espaciais associadas à matriz R, na presença de autocorrelação residual, melhora o ajuste estatístico dos modelos; e, iv) corrobora-se a tese de que, sob alta herdabilidade, a escolha do modelo de análise não altera o posicionamento relativo dos genótipos, e, portanto, não impacta significativamente na seleção de genótipos superiores.Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2015-01-16T13:14:38Z No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Tese - Cláudio Roberto Cardoso de Godoi - 2014.pdf: 1446327 bytes, checksum: 78154341b9ccb5964b8508984eea19e1 (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2015-01-16T13:48:33Z (GMT) No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Tese - Cláudio Roberto Cardoso de Godoi - 2014.pdf: 1446327 bytes, checksum: 78154341b9ccb5964b8508984eea19e1 (MD5)Made available in DSpace on 2015-01-16T13:48:33Z (GMT). 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dc.title.por.fl_str_mv |
Divergência genética e predição de valores genotípicos em soja |
dc.title.alternative.eng.fl_str_mv |
Genetic divergence and genotypic values prediction in soybean |
title |
Divergência genética e predição de valores genotípicos em soja |
spellingShingle |
Divergência genética e predição de valores genotípicos em soja Godoi, Cláudio Roberto Cardoso de Glycine max SSR Introdução de germoplasma Variabilidade genética REML/BLUP Matriz de parentesco Modelo misto Modelo fixo Glycine max SSR Germplasm introduction Genetic variability REML/BLUP Relationship matrix Mixed model Fixed model GENETICA::GENETICA VEGETAL |
title_short |
Divergência genética e predição de valores genotípicos em soja |
title_full |
Divergência genética e predição de valores genotípicos em soja |
title_fullStr |
Divergência genética e predição de valores genotípicos em soja |
title_full_unstemmed |
Divergência genética e predição de valores genotípicos em soja |
title_sort |
Divergência genética e predição de valores genotípicos em soja |
author |
Godoi, Cláudio Roberto Cardoso de |
author_facet |
Godoi, Cláudio Roberto Cardoso de |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Duarte, João Batista |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/4117228759548186 |
dc.contributor.referee1.fl_str_mv |
Duarte, João Batista |
dc.contributor.referee2.fl_str_mv |
Silva Filho, João Luis da |
dc.contributor.referee3.fl_str_mv |
Toledo, José Francisco Ferraz de |
dc.contributor.referee4.fl_str_mv |
Chaves, Lázaro José |
dc.contributor.referee5.fl_str_mv |
Coelho, Alexandre Siqueira Guedes |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/3420617931960375 |
dc.contributor.author.fl_str_mv |
Godoi, Cláudio Roberto Cardoso de |
contributor_str_mv |
Duarte, João Batista Duarte, João Batista Silva Filho, João Luis da Toledo, José Francisco Ferraz de Chaves, Lázaro José Coelho, Alexandre Siqueira Guedes |
dc.subject.por.fl_str_mv |
Glycine max SSR Introdução de germoplasma Variabilidade genética REML/BLUP Matriz de parentesco Modelo misto Modelo fixo |
topic |
Glycine max SSR Introdução de germoplasma Variabilidade genética REML/BLUP Matriz de parentesco Modelo misto Modelo fixo Glycine max SSR Germplasm introduction Genetic variability REML/BLUP Relationship matrix Mixed model Fixed model GENETICA::GENETICA VEGETAL |
dc.subject.eng.fl_str_mv |
Glycine max SSR Germplasm introduction Genetic variability REML/BLUP Relationship matrix Mixed model Fixed model |
dc.subject.cnpq.fl_str_mv |
GENETICA::GENETICA VEGETAL |
description |
Soybean breeding programs practice selection of high genetic value genotypes with two main objectives: a) to use them as parents in the hybridization process (first stage of the program), and b) to indicate them as new cultivars (final stage of the program). In this context, a first study used microsatellite markers (SSR) to assess the genetic diversity of soybean germplasm adapted to the Brazilian conditions. The experimental material consisted of 192 accessions, which included both introductions and Brazilian germplasm. The genetic divergence was assessed by descriptive analysis and the Rogers-W genetic distance. A total of 222 alleles were identified in the 37 genotyped loci, with an average of six alleles and a range of 2 to 14 alleles per locus. The genotypes were clustered according to the origin of the germplasm, and resulted in two groups: one group formed by introductions and other by Brazilian genotypes. Eighty five percent of the genetic distances estimates were above 0.70, suggesting that the assessed germplasm has good potential for hybridization in soybean breeding programs. It was concluded that the SSR markers are useful to identify divergent genotypic groups, as well as genotypic combinations with high genetic variability. It also became clear that the use of introduced germplasm ensures the incorporation of alleles necessary to increase the genetic base of soybeans and, consequently, the variability needed for the selective process. In a second study, the mixed model approach was used to assess some strategies of estimation and prediction of genotypic values for grain yield in the soybean regional yield trials. A total of 111 genotypes classified into three maturity groups were sown in up to 23 experiments in Central Brazil. The experiments were carried out in randomized complete block designs, with three replications. The biometrical analyses followed the fixed model and mixed model approaches, in the latter case assuming the genotypic effects as random. In the mixed model approach, analyses were made with or without information from the relationship estimates obtained either by genealogy or SSR markers, arranged in a genotypic covariance matrix (G). Also, in a context of spatial analysis, different structures were used in the residual covariance matrix (R) for each mixed model adjusted. The following conclusions were obtained: i) the fixed model analysis is adequate to estimate genotypic values in soybean trials with balanced data and orthogonal design; ii) under such conditions and intermediate to low heritability, the inclusion of relationship information associated to G matrix, although does not ensure the best fit models, improves the precision in predicting genotypic values; iii) the use of spatial structures associated to R matrix, in presence of the residual autocorrelation, improves the goodness of model fit to the data; and, iv) the choice of model for the analysis does not change the ranking of the genotypes in high heritability situations and, therefore, does not impact significantly on the selection of superior genotypes. |
publishDate |
2014 |
dc.date.issued.fl_str_mv |
2014-05-07 |
dc.date.accessioned.fl_str_mv |
2015-01-16T13:48:33Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/doctoralThesis |
format |
doctoralThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
GODOI, Cláudio Roberto Cardoso de. Divergência genética e predição de valores genotípicos em soja. 2014. 108 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2014. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/3884 |
identifier_str_mv |
GODOI, Cláudio Roberto Cardoso de. Divergência genética e predição de valores genotípicos em soja. 2014. 108 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2014. |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/3884 |
dc.language.iso.fl_str_mv |
por |
language |
por |
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UFG |
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Brasil |
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Universidade Federal de Goiás |
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