Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos

Detalhes bibliográficos
Autor(a) principal: Macedo , Luciano Medina
Data de Publicação: 2009
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFG
dARK ID: ark:/38995/00130000024g5
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/6240
Resumo: In this work a genetic map and QTL mapping were built for growth and wood quality characters in a interspecific hybrids progeny of Eucalyptus. Samples of genomic DNA were isolated from 200 individuals belonging to a interspecific hybrids progeny. A screening of 300 pairs microsatellite loci (SSR) primers was done and from those 76 loci were selected to compose 19 tetraplex combinations, based in presence of valid polimorfism for QTL mapping and in quality of allele’s amplification. Among the 76 loci appraised in multiplex system, 14 presented significant distortion of segregation in χ2 test using "Criterion of Bonferroni" with 5% of significance, and they were excluded of mapping analyses. Using LOD 3 and recombination fraction of 0.40, 12 linkage groups compatible with described in other mapping works in Eucalyptus were identified. An integrated genetic map was obtained with total length of 1240 cM and medium distance among marks of 22 cM, It provides a covering genomic of approximately 75% in relation to genome size of Eucalyptus gender. A part of density appraised by pilodyn apparatus, all others characters showed QTL association through variance analysis (single marks analysis). For growth characters, four loci were associated to seven QTL and 19% for genotypic variation of diameter, 18% for height and 10% for volume these QTL were capable to explain. Among wood quality characters evaluated by NIRS, three QTL were capable to explain 17% of genotypic variance for density, while for yield cellulose, four QTL together were capable to explain 7,5% of this variance. For the characters related with lignin properties also evaluated by NIRS, were identified three QTL capable to explain 9% of genotypic variation for lignin quantity, and two QTL were capable to explain 6% of genotypic variation for siringil/guaiacil relationship. Most of identified QTL for different characters appraised in this work coincided with linkage groups and as well the amount of variance of QTL detected by other authors, which carried out QTL mapping for these same characters. Although comparatively the SAM showed inferior efficiency in relation to fenotypic selection, it can be useful for optimization of futures field experiments into progenies which QTL mapping already was accomplished, where only best genotypes can be stablished in field instead to whole progeny. The application of SAM in forest breeding programs is possible to be used in early selection starting from second breeding generation, using QTL information of crosses mapped in these breeding programs. However, QTL used for SAM should be robust in progenies where they were mapped, like as QTL identified in linkage group 9 for character DAP in this dissertation, that beside consistence datas in progeny DG x GL2, were capable to explain the same amount of variability for QTL mapped by Kirst et al. (2007) (12%), which used different genetic markers and techniques for QTL mapping. These results prove that application of SAM is viable in breeding programs, and apart of peculiarities in each crossing, certain linkage groups are stable among different progenies for a same character.
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spelling Coelho, Alexandre Siqueira Guedeshttp://lattes.cnpq.br/0840926305216925Coelho, Alexandre Siqueira GuedesSibov, Sergio TadeuBreseghello , Flaviohttp://lattes.cnpq.br/1835197253717078Macedo , Luciano Medina2016-09-21T11:32:53Z2009-02-26MEDINA-MACEDO, L. Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos. 2009. 143 f. Dissertação (Mestrado em Agronomia) - Universidade Federal de Goiás, Goiânia, 2009.http://repositorio.bc.ufg.br/tede/handle/tede/6240ark:/38995/00130000024g5In this work a genetic map and QTL mapping were built for growth and wood quality characters in a interspecific hybrids progeny of Eucalyptus. Samples of genomic DNA were isolated from 200 individuals belonging to a interspecific hybrids progeny. A screening of 300 pairs microsatellite loci (SSR) primers was done and from those 76 loci were selected to compose 19 tetraplex combinations, based in presence of valid polimorfism for QTL mapping and in quality of allele’s amplification. Among the 76 loci appraised in multiplex system, 14 presented significant distortion of segregation in χ2 test using "Criterion of Bonferroni" with 5% of significance, and they were excluded of mapping analyses. Using LOD 3 and recombination fraction of 0.40, 12 linkage groups compatible with described in other mapping works in Eucalyptus were identified. An integrated genetic map was obtained with total length of 1240 cM and medium distance among marks of 22 cM, It provides a covering genomic of approximately 75% in relation to genome size of Eucalyptus gender. A part of density appraised by pilodyn apparatus, all others characters showed QTL association through variance analysis (single marks analysis). For growth characters, four loci were associated to seven QTL and 19% for genotypic variation of diameter, 18% for height and 10% for volume these QTL were capable to explain. Among wood quality characters evaluated by NIRS, three QTL were capable to explain 17% of genotypic variance for density, while for yield cellulose, four QTL together were capable to explain 7,5% of this variance. For the characters related with lignin properties also evaluated by NIRS, were identified three QTL capable to explain 9% of genotypic variation for lignin quantity, and two QTL were capable to explain 6% of genotypic variation for siringil/guaiacil relationship. Most of identified QTL for different characters appraised in this work coincided with linkage groups and as well the amount of variance of QTL detected by other authors, which carried out QTL mapping for these same characters. Although comparatively the SAM showed inferior efficiency in relation to fenotypic selection, it can be useful for optimization of futures field experiments into progenies which QTL mapping already was accomplished, where only best genotypes can be stablished in field instead to whole progeny. The application of SAM in forest breeding programs is possible to be used in early selection starting from second breeding generation, using QTL information of crosses mapped in these breeding programs. However, QTL used for SAM should be robust in progenies where they were mapped, like as QTL identified in linkage group 9 for character DAP in this dissertation, that beside consistence datas in progeny DG x GL2, were capable to explain the same amount of variability for QTL mapped by Kirst et al. (2007) (12%), which used different genetic markers and techniques for QTL mapping. These results prove that application of SAM is viable in breeding programs, and apart of peculiarities in each crossing, certain linkage groups are stable among different progenies for a same character.Neste trabalho foi construído um mapa genético e realizado o mapeamento de QTL para caracteres de crescimento e qualidade da madeira em uma progênie de híbridos interespecíficos de Eucalyptus. Foram isoladas amostras de DNA genômico de 200 indivíduos pertencentes a uma progênie de híbridos interespecíficos. A partir de 300 pares de primers microssatélites (SSR), foram selecionados com base na presença de polimorfismo válido para o mapeamento de QTL e na qualidade de amplificação de seus alelos, 76 locos para compor 19 combinações tetraplex. Dentre os 76 locos avaliados em sistema multiplex, 14 apresentaram distorção de segregação significativa no teste χ2 perante o “Critério de Bonferroni” com nível de significância de 5% e foram excluídos das análises de mapeamento. Utilizando LOD 3 e fração de recombinação de 0,40, foram identificados 12 grupos de ligação compatíveis com os descritos em outros trabalhos de mapeamento em Eucalyptus. Foi obtido um mapa genético integrado com comprimento total de 1240 cM e distância média entre marcas de 22 cM, que proporciona uma cobertura genômica de aproximadamente 75% em relação ao tamanho do genoma deste gênero. Com exceção da densidade avaliada por pilodyn, todos os outros caracteres avaliados apresentaram associação a QTL por análise de variância (análise de marcas simples). Para os caracteres de crescimento, quatro locos estiveram associados a sete QTL, sendo que o montante da variação genotípica que estes QTL foram capazes de explicar foi de 19% para diâmetro, 18% para altura e 10% para volume. Dentre os caracteres de qualidade da madeira avaliados por NIRS, três QTL foram capazes de explicar 17% da variância genotípica para densidade, enquanto para o rendimento de celulose quatro QTL foram capazes de explicar juntos 7,5% desta variância. Para os caracteres relacionados com as propriedades da lignina também avaliados por NIRS, foram identificados três QTL capazes de explicar 9% da variação genotípica do caráter teor de lignina, e dois QTL capazes de explicar 6% da variação genotípica para a relação siringil/guaiacil. A maioria dos QTL identificados para os diferentes caracteres avaliados neste trabalho coincidiram com os grupos de ligação e o montante da variância representada com QTL identificados nos trabalhos de outros autores que realizaram mapeamento de QTL para os mesmos caracteres avaliados. Embora comparativamente a seleção assistida por marcadores moleculares tenha apresentado eficiência inferior em relação à seleção fenotípica, ela pode ser muito útil na otimização de futuros experimentos de campo de progênies para as quais já foi realizado o mapeamento de QTL, onde somente os genótipos com desempenho superior poderão ser avaliados em campo ao invés de toda a progênie. A aplicação de SAM em programas de melhoramento genético florestal é possível para a seleção precoce a partir da segunda geração de melhoramento, sempre que forem utilizadas informações de QTL mapeados nos cruzamentos realizados por estes programas de melhoramento. No entanto, estes QTL que serão utilizados para SAM, devem ser robustos nas progênies onde eles foram mapeados, tal como os QTL identificados nesta dissertação no grupo de ligação 9 para o caráter DAP, que além da consistência dos dados da progênie DG x GL2, foram capaz de explicar o mesmo montante da variabilidade com QTL mapeados para este caráter (12%) por Kirst et al. (2007), que utilizaram diferentes marcadores genéticos e técnicas de mapeamento de QTL. Estes dados comprovam que a aplicação da SAM é viável em programas de melhoramento, e que apesar das peculiaridades únicas de cada cruzamento, determinados grupos de ligação apresentam estabilidade de QTL entre diferente progênies para um mesmo caráter.Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2016-09-21T11:32:31Z No. of bitstreams: 2 Dissertação - Luciano Medina Macedo - 2009.pdf: 2515834 bytes, checksum: e30a9d4d1538ea85e265eedf8a8e2396 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2016-09-21T11:32:53Z (GMT) No. of bitstreams: 2 Dissertação - Luciano Medina Macedo - 2009.pdf: 2515834 bytes, checksum: e30a9d4d1538ea85e265eedf8a8e2396 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2016-09-21T11:32:53Z (GMT). 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dc.title.por.fl_str_mv Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
dc.title.alternative.eng.fl_str_mv Genetic mapping of QTL for characteristics of industrial interest of the Eucalyptus’s wood in an interspecific hybrid progeny
title Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
spellingShingle Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
Macedo , Luciano Medina
Eucalyptus
Mapeamento genético
Marcadores microssatélite
Mapeamento de QTL
SAM
Eucalyptus
Genetic mapping
Microsatellite markers
QTL mapping
SAM
GENETICA::GENETICA VEGETAL
title_short Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
title_full Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
title_fullStr Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
title_full_unstemmed Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
title_sort Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos
author Macedo , Luciano Medina
author_facet Macedo , Luciano Medina
author_role author
dc.contributor.advisor1.fl_str_mv Coelho, Alexandre Siqueira Guedes
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/0840926305216925
dc.contributor.referee1.fl_str_mv Coelho, Alexandre Siqueira Guedes
dc.contributor.referee2.fl_str_mv Sibov, Sergio Tadeu
dc.contributor.referee3.fl_str_mv Breseghello , Flavio
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1835197253717078
dc.contributor.author.fl_str_mv Macedo , Luciano Medina
contributor_str_mv Coelho, Alexandre Siqueira Guedes
Coelho, Alexandre Siqueira Guedes
Sibov, Sergio Tadeu
Breseghello , Flavio
dc.subject.por.fl_str_mv Eucalyptus
Mapeamento genético
Marcadores microssatélite
Mapeamento de QTL
SAM
topic Eucalyptus
Mapeamento genético
Marcadores microssatélite
Mapeamento de QTL
SAM
Eucalyptus
Genetic mapping
Microsatellite markers
QTL mapping
SAM
GENETICA::GENETICA VEGETAL
dc.subject.eng.fl_str_mv Eucalyptus
Genetic mapping
Microsatellite markers
QTL mapping
SAM
dc.subject.cnpq.fl_str_mv GENETICA::GENETICA VEGETAL
description In this work a genetic map and QTL mapping were built for growth and wood quality characters in a interspecific hybrids progeny of Eucalyptus. Samples of genomic DNA were isolated from 200 individuals belonging to a interspecific hybrids progeny. A screening of 300 pairs microsatellite loci (SSR) primers was done and from those 76 loci were selected to compose 19 tetraplex combinations, based in presence of valid polimorfism for QTL mapping and in quality of allele’s amplification. Among the 76 loci appraised in multiplex system, 14 presented significant distortion of segregation in χ2 test using "Criterion of Bonferroni" with 5% of significance, and they were excluded of mapping analyses. Using LOD 3 and recombination fraction of 0.40, 12 linkage groups compatible with described in other mapping works in Eucalyptus were identified. An integrated genetic map was obtained with total length of 1240 cM and medium distance among marks of 22 cM, It provides a covering genomic of approximately 75% in relation to genome size of Eucalyptus gender. A part of density appraised by pilodyn apparatus, all others characters showed QTL association through variance analysis (single marks analysis). For growth characters, four loci were associated to seven QTL and 19% for genotypic variation of diameter, 18% for height and 10% for volume these QTL were capable to explain. Among wood quality characters evaluated by NIRS, three QTL were capable to explain 17% of genotypic variance for density, while for yield cellulose, four QTL together were capable to explain 7,5% of this variance. For the characters related with lignin properties also evaluated by NIRS, were identified three QTL capable to explain 9% of genotypic variation for lignin quantity, and two QTL were capable to explain 6% of genotypic variation for siringil/guaiacil relationship. Most of identified QTL for different characters appraised in this work coincided with linkage groups and as well the amount of variance of QTL detected by other authors, which carried out QTL mapping for these same characters. Although comparatively the SAM showed inferior efficiency in relation to fenotypic selection, it can be useful for optimization of futures field experiments into progenies which QTL mapping already was accomplished, where only best genotypes can be stablished in field instead to whole progeny. The application of SAM in forest breeding programs is possible to be used in early selection starting from second breeding generation, using QTL information of crosses mapped in these breeding programs. However, QTL used for SAM should be robust in progenies where they were mapped, like as QTL identified in linkage group 9 for character DAP in this dissertation, that beside consistence datas in progeny DG x GL2, were capable to explain the same amount of variability for QTL mapped by Kirst et al. (2007) (12%), which used different genetic markers and techniques for QTL mapping. These results prove that application of SAM is viable in breeding programs, and apart of peculiarities in each crossing, certain linkage groups are stable among different progenies for a same character.
publishDate 2009
dc.date.issued.fl_str_mv 2009-02-26
dc.date.accessioned.fl_str_mv 2016-09-21T11:32:53Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv MEDINA-MACEDO, L. Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos. 2009. 143 f. Dissertação (Mestrado em Agronomia) - Universidade Federal de Goiás, Goiânia, 2009.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/6240
dc.identifier.dark.fl_str_mv ark:/38995/00130000024g5
identifier_str_mv MEDINA-MACEDO, L. Mapeamento de QTL para características de interesse industrial da madeira de Eucalyptus em progênie de híbridos interespecíficos. 2009. 143 f. Dissertação (Mestrado em Agronomia) - Universidade Federal de Goiás, Goiânia, 2009.
ark:/38995/00130000024g5
url http://repositorio.bc.ufg.br/tede/handle/tede/6240
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