Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen

Detalhes bibliográficos
Autor(a) principal: Crispim Filho, Ailton José
Data de Publicação: 2023
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFG
dARK ID: ark:/38995/0013000001tfq
Texto Completo: http://repositorio.bc.ufg.br/tede/handle/tede/12875
Resumo: Staygreen and grain yield are agronomic traits of interest to be evaluated in modern maize breeding programs. A modern approach to improving these traits can be genomic selection, whose efficiency depends, among other factors, on the proper choice of the prediction model to be used, the effects that will be accounted for in this model and the resources and time required for the prediction process of the phenotypes. In this work, three parametric models and a non-parametric model were used in the multi-environment genomic prediction of single maize hybrids for staygreen and grain yield, considering additive effects, exclusively, and together with dominance effects. The phenotypic data refer to the evaluation of 152 single maize hybrids, from the crossing of 42 inbred lines, evaluated in 13 environments for grain yield and 8 environments for staygreen. The lines were genotyped with 13,826 SNPs (Single Nucleotide Polymorphism) markers using the GBS (Genotyping by Sequencing) method, and their genotypic combinations were used to generate the genotypes of the hybrids. Adjusted means for each genotype at each location were used to train the genomic prediction models. The predictive ability was measured using Pearson's mean correlation, obtained using the ten-fold system. The models' predictive abilities ranged from 0.23 to 0.83 for grain yield and 0.44 to 0.72 for staygreen. The inclusion of dominance effects in all parametric models increased the predictive abilities for both traits, and for grain yield the average increase was 25%. This confirms that the inclusion of non-additive effects in the prediction model allows better exploration of heterosis and greater precision in genomic selection. The models did not differ between attributes linked to predictive ability. Due to the lower computational demand of GBLUP, it is the most suitable to predict the phenotypic performance of these characters in this data set. Prediction with the additive-dominant GBLUP model indicates the possibility of selecting better combinations of inbred lines than those already performed, which potentially increase grain and staygreen productivity by selecting the best 15 hybrids per prediction for each character separately.
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spelling Resende, Marcela Pedroso Mendeshttp://lattes.cnpq.br/2080097211870591Coelho, Alexandre Siqueira Guedeshttp://lattes.cnpq.br/0840926305216925Resende, Marcela Pedroso MendesMôro, Gustavo VittiSouza Júnior, Cláudio Lopes deCosta Neto, Germano Martins FerreiraToledo, Fernando Henrique Ribeiro Barrozohttp://lattes.cnpq.br/9735629084160640Crispim Filho, Ailton José2023-06-01T10:56:52Z2023-06-01T10:56:52Z2023-04-28CRISPIM FILHO, A. J. Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen. 2023. 75 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2023.http://repositorio.bc.ufg.br/tede/handle/tede/12875ark:/38995/0013000001tfqStaygreen and grain yield are agronomic traits of interest to be evaluated in modern maize breeding programs. A modern approach to improving these traits can be genomic selection, whose efficiency depends, among other factors, on the proper choice of the prediction model to be used, the effects that will be accounted for in this model and the resources and time required for the prediction process of the phenotypes. In this work, three parametric models and a non-parametric model were used in the multi-environment genomic prediction of single maize hybrids for staygreen and grain yield, considering additive effects, exclusively, and together with dominance effects. The phenotypic data refer to the evaluation of 152 single maize hybrids, from the crossing of 42 inbred lines, evaluated in 13 environments for grain yield and 8 environments for staygreen. The lines were genotyped with 13,826 SNPs (Single Nucleotide Polymorphism) markers using the GBS (Genotyping by Sequencing) method, and their genotypic combinations were used to generate the genotypes of the hybrids. Adjusted means for each genotype at each location were used to train the genomic prediction models. The predictive ability was measured using Pearson's mean correlation, obtained using the ten-fold system. The models' predictive abilities ranged from 0.23 to 0.83 for grain yield and 0.44 to 0.72 for staygreen. The inclusion of dominance effects in all parametric models increased the predictive abilities for both traits, and for grain yield the average increase was 25%. This confirms that the inclusion of non-additive effects in the prediction model allows better exploration of heterosis and greater precision in genomic selection. The models did not differ between attributes linked to predictive ability. Due to the lower computational demand of GBLUP, it is the most suitable to predict the phenotypic performance of these characters in this data set. Prediction with the additive-dominant GBLUP model indicates the possibility of selecting better combinations of inbred lines than those already performed, which potentially increase grain and staygreen productivity by selecting the best 15 hybrids per prediction for each character separately.Staygreen e produtividade de grãos são caracteres agronômicos de interesse de serem avaliados em programas modernos de melhoramento de milho. Uma abordagem moderna para melhoramento destes caracteres pode ser a seleção genômica, cuja eficiência depende, dentre outros fatores, da escolha adequada do modelo de predição a ser utilizado, dos efeitos que serão contabilizados neste modelo e dos recursos e tempo necessários para o processo de predição dos fenótipos. Neste trabalho, três modelos paramétricos e um modelo não paramétrico foram utilizados na predição genômica multi-ambiental de híbridos simples de milho para staygreen e produtividade de grãos, considerando efeitos aditivos, exclusivamente, e em conjunto com efeitos de dominância. Os dados fenotípicos se referem à avaliação de 152 híbridos simples de milho, provenientes do cruzamento de 42 linhagens endogâmicas, avaliados em 13 ambientes para produtividade de grãos e 8 ambientes para staygreen. As linhagens foram genotipadas com 13.826 marcadores SNPs (Single Nucleotide Polymorphism) pelo o método GBS (Genotyping by Sequencing), sendo suas combinações genotípicas utilizadas para gerar os genótipos dos híbridos. As médias ajustadas para cada genótipo, em cada local, foram usadas para treinar os modelos de predição genômica. A habilidade preditiva foi mensurada por meio da correlação de Pearson, obtida por meio do sistema de ten-fold. As habilidades preditivas dos modelos variaram de 0,23 a 0,83 para produtividade de grãos e 0,44 a 0,72 para staygreen. A inclusão dos efeitos de dominância em todos os modelos paramétricos incrementou as habilidades preditivas para os dois caracteres, sendo que para produtividade de grãos o incremento médio foi de 25%. Isto confirma que a inclusão de efeitos nãoaditivos no modelo de predição permite explorar melhor a heterose e ter maior precisão na seleção genômica. Os modelos não diferiram entre atributos vinculados a capacidade preditiva. Devido a menor demanda computacional do GBLUP, ele é o mais indicado para predizer o desempenho fenotípico destes caracteres neste conjunto de dados. A predição com o modelo GBLUP aditivodominante indica a possibilidade de seleção de melhores combinações de linhagens do que as já realizadas que, potencialmente, elevam a produtividade de grãos e staygreen ao selecionar os melhores 15 híbridos por predição para cada caráter separadamente.Submitted by Dayane Basílio (dayanebasilio@ufg.br) on 2023-05-31T15:04:22Z No. of bitstreams: 2 Tese - Ailton Jose Crispim Filho - 2023.pdf: 2664317 bytes, checksum: 851e9da669ece105459d2548faeb9bab (MD5) license_rdf: 805 bytes, checksum: 4460e5956bc1d1639be9ae6146a50347 (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2023-06-01T10:56:52Z (GMT) No. of bitstreams: 2 Tese - Ailton Jose Crispim Filho - 2023.pdf: 2664317 bytes, checksum: 851e9da669ece105459d2548faeb9bab (MD5) license_rdf: 805 bytes, checksum: 4460e5956bc1d1639be9ae6146a50347 (MD5)Made available in DSpace on 2023-06-01T10:56:52Z (GMT). No. of bitstreams: 2 Tese - Ailton Jose Crispim Filho - 2023.pdf: 2664317 bytes, checksum: 851e9da669ece105459d2548faeb9bab (MD5) license_rdf: 805 bytes, checksum: 4460e5956bc1d1639be9ae6146a50347 (MD5) Previous issue date: 2023-04-28Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESporUniversidade Federal de GoiásPrograma de Pós-graduação em Genética e Melhoramento de Plantas (EA)UFGBrasilEscola de Agronomia - EA (RMG)Attribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessSeleção genômicaZea mays L.Efeito de dominânciaHabilidade preditivaGenomic selectionDominance effectPredictive abilityCIENCIAS AGRARIASModelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreenMulti-environment genomic prediction models in tropical maize: grain yield and staygreeninfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis6050050050050021551reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGLICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.bc.ufg.br/tede/bitstreams/91b6bd67-117a-4e61-a851-501d2c023532/download8a4605be74aa9ea9d79846c1fba20a33MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8805http://repositorio.bc.ufg.br/tede/bitstreams/e22abc61-66f6-45b8-bee2-09e9dbf6ba79/download4460e5956bc1d1639be9ae6146a50347MD52ORIGINALTese - Ailton Jose Crispim Filho - 2023.pdfTese - Ailton Jose Crispim Filho - 2023.pdfapplication/pdf2664317http://repositorio.bc.ufg.br/tede/bitstreams/2362f659-9020-4725-a09e-b472fd245e0e/download851e9da669ece105459d2548faeb9babMD53tede/128752023-06-14 12:04:15.687http://creativecommons.org/licenses/by-nc-nd/4.0/Attribution-NonCommercial-NoDerivatives 4.0 Internationalopen.accessoai:repositorio.bc.ufg.br:tede/12875http://repositorio.bc.ufg.br/tedeRepositório InstitucionalPUBhttp://repositorio.bc.ufg.br/oai/requesttasesdissertacoes.bc@ufg.bropendoar:2023-06-14T15:04:15Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)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
dc.title.pt_BR.fl_str_mv Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
dc.title.alternative.eng.fl_str_mv Multi-environment genomic prediction models in tropical maize: grain yield and staygreen
title Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
spellingShingle Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
Crispim Filho, Ailton José
Seleção genômica
Zea mays L.
Efeito de dominância
Habilidade preditiva
Genomic selection
Dominance effect
Predictive ability
CIENCIAS AGRARIAS
title_short Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
title_full Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
title_fullStr Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
title_full_unstemmed Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
title_sort Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen
author Crispim Filho, Ailton José
author_facet Crispim Filho, Ailton José
author_role author
dc.contributor.advisor1.fl_str_mv Resende, Marcela Pedroso Mendes
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/2080097211870591
dc.contributor.advisor-co1.fl_str_mv Coelho, Alexandre Siqueira Guedes
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/0840926305216925
dc.contributor.referee1.fl_str_mv Resende, Marcela Pedroso Mendes
dc.contributor.referee2.fl_str_mv Môro, Gustavo Vitti
dc.contributor.referee3.fl_str_mv Souza Júnior, Cláudio Lopes de
dc.contributor.referee4.fl_str_mv Costa Neto, Germano Martins Ferreira
dc.contributor.referee5.fl_str_mv Toledo, Fernando Henrique Ribeiro Barrozo
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/9735629084160640
dc.contributor.author.fl_str_mv Crispim Filho, Ailton José
contributor_str_mv Resende, Marcela Pedroso Mendes
Coelho, Alexandre Siqueira Guedes
Resende, Marcela Pedroso Mendes
Môro, Gustavo Vitti
Souza Júnior, Cláudio Lopes de
Costa Neto, Germano Martins Ferreira
Toledo, Fernando Henrique Ribeiro Barrozo
dc.subject.por.fl_str_mv Seleção genômica
Zea mays L.
Efeito de dominância
Habilidade preditiva
topic Seleção genômica
Zea mays L.
Efeito de dominância
Habilidade preditiva
Genomic selection
Dominance effect
Predictive ability
CIENCIAS AGRARIAS
dc.subject.eng.fl_str_mv Genomic selection
Dominance effect
Predictive ability
dc.subject.cnpq.fl_str_mv CIENCIAS AGRARIAS
description Staygreen and grain yield are agronomic traits of interest to be evaluated in modern maize breeding programs. A modern approach to improving these traits can be genomic selection, whose efficiency depends, among other factors, on the proper choice of the prediction model to be used, the effects that will be accounted for in this model and the resources and time required for the prediction process of the phenotypes. In this work, three parametric models and a non-parametric model were used in the multi-environment genomic prediction of single maize hybrids for staygreen and grain yield, considering additive effects, exclusively, and together with dominance effects. The phenotypic data refer to the evaluation of 152 single maize hybrids, from the crossing of 42 inbred lines, evaluated in 13 environments for grain yield and 8 environments for staygreen. The lines were genotyped with 13,826 SNPs (Single Nucleotide Polymorphism) markers using the GBS (Genotyping by Sequencing) method, and their genotypic combinations were used to generate the genotypes of the hybrids. Adjusted means for each genotype at each location were used to train the genomic prediction models. The predictive ability was measured using Pearson's mean correlation, obtained using the ten-fold system. The models' predictive abilities ranged from 0.23 to 0.83 for grain yield and 0.44 to 0.72 for staygreen. The inclusion of dominance effects in all parametric models increased the predictive abilities for both traits, and for grain yield the average increase was 25%. This confirms that the inclusion of non-additive effects in the prediction model allows better exploration of heterosis and greater precision in genomic selection. The models did not differ between attributes linked to predictive ability. Due to the lower computational demand of GBLUP, it is the most suitable to predict the phenotypic performance of these characters in this data set. Prediction with the additive-dominant GBLUP model indicates the possibility of selecting better combinations of inbred lines than those already performed, which potentially increase grain and staygreen productivity by selecting the best 15 hybrids per prediction for each character separately.
publishDate 2023
dc.date.accessioned.fl_str_mv 2023-06-01T10:56:52Z
dc.date.available.fl_str_mv 2023-06-01T10:56:52Z
dc.date.issued.fl_str_mv 2023-04-28
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
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dc.identifier.citation.fl_str_mv CRISPIM FILHO, A. J. Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen. 2023. 75 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2023.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/12875
dc.identifier.dark.fl_str_mv ark:/38995/0013000001tfq
identifier_str_mv CRISPIM FILHO, A. J. Modelos de predição genômica multi-ambiental em milho tropical: produtividade de grãos e staygreen. 2023. 75 f. Tese (Doutorado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2023.
ark:/38995/0013000001tfq
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dc.relation.confidence.fl_str_mv 500
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dc.relation.cnpq.fl_str_mv 155
dc.relation.sponsorship.fl_str_mv 1
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
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rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Genética e Melhoramento de Plantas (EA)
dc.publisher.initials.fl_str_mv UFG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Escola de Agronomia - EA (RMG)
publisher.none.fl_str_mv Universidade Federal de Goiás
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