Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
dARK ID: | ark:/38995/0013000006dbk |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/8470 |
Resumo: | INI have been available in Brazil since 2009, when the first INI, Raltegravir, became available for therapy of rescue of HIV + patients in therapeutic failure. In the year 2017, a second INI was introduced into ART of patients newly diagnosed with HIV-1, Dolutegravir, which had a higher genetic barrier and a single daily dose, replaced Efavirenz in the first line of treatment. However, despite the efficiency of INI, the emergence of viral variants resistant to these drugs is inevitable. For this reason, it is necessary to monitor resistance mutations to INI, which may lead to therapeutic failure, aiming at optimizing the therapeutic regimen and controlling HIV infection. The objective of this study was to evaluate the occurrence of INI mutations and the resistance profile in HIV + / AIDS patients in the city of Jataí/Goiás. The complete IN gene was sequenced from samples from INI-naive patients. Resistance mutations were identified by the Stanford-HIV and IAS-USA database. Viral subtypes were identified by phylogenetic analysis. Among the 52 samples analyzed, no primary mutation was identified. Two accessory mutations (T97A / G163K) were identified and these induce a low level of INI resistance. In total, 152 polymorphisms were identified. The most prevalent subtype was subtype B. Therefore, these data demonstrate that the IN region is still highly conserved, encouraging the use of INI in HIV-1 therapy, and assist in the mapping of HIV-1 genetic diversity in the Southwest region of Goiás. |
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Cardoso, Ludimila Paula Vazhttp://lattes.cnpq.br/5434857923089593Feres, Valéria Christina de RezendeFiaccadori, Fabíola SouzaCardoso, Ludimila Paula Vazhttp://lattes.cnpq.br/0210953049586064Paula, Marcella Silva de2018-05-14T13:08:05Z2018-04-11PAULA, M. S. Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás. 2018. 94 f. Dissertação (Mestrado em Biologia da Relação Parasito-Hospedeiro) - Universidade Federal de Goiás, Goiânia, 2018.http://repositorio.bc.ufg.br/tede/handle/tede/8470ark:/38995/0013000006dbkINI have been available in Brazil since 2009, when the first INI, Raltegravir, became available for therapy of rescue of HIV + patients in therapeutic failure. In the year 2017, a second INI was introduced into ART of patients newly diagnosed with HIV-1, Dolutegravir, which had a higher genetic barrier and a single daily dose, replaced Efavirenz in the first line of treatment. However, despite the efficiency of INI, the emergence of viral variants resistant to these drugs is inevitable. For this reason, it is necessary to monitor resistance mutations to INI, which may lead to therapeutic failure, aiming at optimizing the therapeutic regimen and controlling HIV infection. The objective of this study was to evaluate the occurrence of INI mutations and the resistance profile in HIV + / AIDS patients in the city of Jataí/Goiás. The complete IN gene was sequenced from samples from INI-naive patients. Resistance mutations were identified by the Stanford-HIV and IAS-USA database. Viral subtypes were identified by phylogenetic analysis. Among the 52 samples analyzed, no primary mutation was identified. Two accessory mutations (T97A / G163K) were identified and these induce a low level of INI resistance. In total, 152 polymorphisms were identified. The most prevalent subtype was subtype B. Therefore, these data demonstrate that the IN region is still highly conserved, encouraging the use of INI in HIV-1 therapy, and assist in the mapping of HIV-1 genetic diversity in the Southwest region of Goiás.Os INI estão disponíveis no Brasil desde 2009, quando o primeiro INI, Raltegravir, passou a ser disponibilizado para terapia de resgate de paciente HIV+ em falha terapêutica. No ano de 2017, umsegundo INI foi introduzido na TARV de pacientes recém diagnosticados com HIV-1, o Dolutegravir, que por possuir barreira genética mais elevada e dose diária única, substituiu o Efavirenz na primeira linha de tratamento. Porém, apesar da eficiência dos INI, a emergência de variantes virais resistentes a estes fármacos é inevitável. Por isto, é necessário o monitoramento das mutações de resistência aos INI, que podem levar falha terapêutica, visando a otimização do esquema terapêutico e controle da infecção pelo HIV. O objetivo deste estudo foi avaliar a ocorrência de mutações aos INI e o perfil de resistência em pacientes HIV+/AIDS do município de Jataí/Goiás. O gene completo da IN foi sequenciado a partir de amostras de pacientes virgens de INI. As mutações de resistência foram identificadas pelo banco de dados de Stanford-HIV e IAS-USA. Os subtipos virais foram identificados por análise filogenética. Entre as 52 amostras analisadas, nenhuma mutação primária foi identificada. Duas mutações acessórias (T97A/G163K) foram identificadas e estas induzem baixo nível de resistência à Raltegravir e Elvitegravir. No total, 152 polimorfismos foram identificados. O subtipo mais prevalente foi o subtipo B. Portanto, estes dados demonstram que a região da IN ainda é bastante conservada, encorajando o uso de INI na terapia contra o HIV-1 e auxiliam no mapeamento da diversidade genética do HIV-1 na região Sudoeste GoianoSubmitted by Luciana Ferreira (lucgeral@gmail.com) on 2018-05-14T13:06:07Z No. of bitstreams: 2 Dissertação - Marcella Silva de Paula - 2018.pdf: 2802750 bytes, checksum: 99659e0beca35484a0765a68de6bfdd7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2018-05-14T13:08:05Z (GMT) No. of bitstreams: 2 Dissertação - Marcella Silva de Paula - 2018.pdf: 2802750 bytes, checksum: 99659e0beca35484a0765a68de6bfdd7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2018-05-14T13:08:05Z (GMT). No. of bitstreams: 2 Dissertação - Marcella Silva de Paula - 2018.pdf: 2802750 bytes, checksum: 99659e0beca35484a0765a68de6bfdd7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2018-04-11Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqapplication/pdfporUniversidade Federal de GoiásPrograma de Pós-graduação em Biologia da Relação Parasito-Hospedeiro (IPTSP)UFGBrasilInstituto de Patologia Tropical e Saúde Pública - IPTSP (RG)http://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessHIV-1ResistênciaDiversidade e Integrase HIV-1ResistanceDiversity and integraseHIV-1CLINICA MEDICA::DOENCAS INFECCIOSAS E PARASITARIASAnálise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/GoiásAnalysis of genetic diversity and mutations in the gene of the HIV-1 isolate integration of patients served in the municipality of Jataí / Goiásinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-5087190859350688984600600600600-77690114445645562881767748423488408711-2555911436985713659reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGLICENSElicense.txtlicense.txttext/plain; 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dc.title.eng.fl_str_mv |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
dc.title.alternative.eng.fl_str_mv |
Analysis of genetic diversity and mutations in the gene of the HIV-1 isolate integration of patients served in the municipality of Jataí / Goiás |
title |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
spellingShingle |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás Paula, Marcella Silva de HIV-1 Resistência Diversidade e Integrase HIV-1 Resistance Diversity and integrase HIV-1 CLINICA MEDICA::DOENCAS INFECCIOSAS E PARASITARIAS |
title_short |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
title_full |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
title_fullStr |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
title_full_unstemmed |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
title_sort |
Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás |
author |
Paula, Marcella Silva de |
author_facet |
Paula, Marcella Silva de |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Cardoso, Ludimila Paula Vaz |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/5434857923089593 |
dc.contributor.referee1.fl_str_mv |
Feres, Valéria Christina de Rezende |
dc.contributor.referee2.fl_str_mv |
Fiaccadori, Fabíola Souza |
dc.contributor.referee3.fl_str_mv |
Cardoso, Ludimila Paula Vaz |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/0210953049586064 |
dc.contributor.author.fl_str_mv |
Paula, Marcella Silva de |
contributor_str_mv |
Cardoso, Ludimila Paula Vaz Feres, Valéria Christina de Rezende Fiaccadori, Fabíola Souza Cardoso, Ludimila Paula Vaz |
dc.subject.por.fl_str_mv |
HIV-1 Resistência Diversidade e Integrase HIV-1 |
topic |
HIV-1 Resistência Diversidade e Integrase HIV-1 Resistance Diversity and integrase HIV-1 CLINICA MEDICA::DOENCAS INFECCIOSAS E PARASITARIAS |
dc.subject.eng.fl_str_mv |
Resistance Diversity and integrase HIV-1 |
dc.subject.cnpq.fl_str_mv |
CLINICA MEDICA::DOENCAS INFECCIOSAS E PARASITARIAS |
description |
INI have been available in Brazil since 2009, when the first INI, Raltegravir, became available for therapy of rescue of HIV + patients in therapeutic failure. In the year 2017, a second INI was introduced into ART of patients newly diagnosed with HIV-1, Dolutegravir, which had a higher genetic barrier and a single daily dose, replaced Efavirenz in the first line of treatment. However, despite the efficiency of INI, the emergence of viral variants resistant to these drugs is inevitable. For this reason, it is necessary to monitor resistance mutations to INI, which may lead to therapeutic failure, aiming at optimizing the therapeutic regimen and controlling HIV infection. The objective of this study was to evaluate the occurrence of INI mutations and the resistance profile in HIV + / AIDS patients in the city of Jataí/Goiás. The complete IN gene was sequenced from samples from INI-naive patients. Resistance mutations were identified by the Stanford-HIV and IAS-USA database. Viral subtypes were identified by phylogenetic analysis. Among the 52 samples analyzed, no primary mutation was identified. Two accessory mutations (T97A / G163K) were identified and these induce a low level of INI resistance. In total, 152 polymorphisms were identified. The most prevalent subtype was subtype B. Therefore, these data demonstrate that the IN region is still highly conserved, encouraging the use of INI in HIV-1 therapy, and assist in the mapping of HIV-1 genetic diversity in the Southwest region of Goiás. |
publishDate |
2018 |
dc.date.accessioned.fl_str_mv |
2018-05-14T13:08:05Z |
dc.date.issued.fl_str_mv |
2018-04-11 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
PAULA, M. S. Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás. 2018. 94 f. Dissertação (Mestrado em Biologia da Relação Parasito-Hospedeiro) - Universidade Federal de Goiás, Goiânia, 2018. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/8470 |
dc.identifier.dark.fl_str_mv |
ark:/38995/0013000006dbk |
identifier_str_mv |
PAULA, M. S. Análise da diversidade genética e mutações no gene da integrase de isolados do HIV-1 de pacientes atendidos no município de Jataí/Goiás. 2018. 94 f. Dissertação (Mestrado em Biologia da Relação Parasito-Hospedeiro) - Universidade Federal de Goiás, Goiânia, 2018. ark:/38995/0013000006dbk |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/8470 |
dc.language.iso.fl_str_mv |
por |
language |
por |
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-5087190859350688984 |
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600 600 600 600 |
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-7769011444564556288 |
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1767748423488408711 |
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-2555911436985713659 |
dc.rights.driver.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc-nd/4.0/ |
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openAccess |
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Universidade Federal de Goiás |
dc.publisher.program.fl_str_mv |
Programa de Pós-graduação em Biologia da Relação Parasito-Hospedeiro (IPTSP) |
dc.publisher.initials.fl_str_mv |
UFG |
dc.publisher.country.fl_str_mv |
Brasil |
dc.publisher.department.fl_str_mv |
Instituto de Patologia Tropical e Saúde Pública - IPTSP (RG) |
publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.source.none.fl_str_mv |
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