Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae)
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
dARK ID: | ark:/38995/001300000b14m |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/5594 |
Resumo: | Tabebuia roseoalba (RIDL.) Sandwith (Bignoniaceae) is widely distributed in Neotropical seasonally dry forests, occurring mainly from Northeast towards the Central West and Southeast Brazil, and also in Paraguay, Bolivia and Peru. The phylogeography of this species may help us to understand how historical events influenced its genetic diversity and in the current geographic distribution of seasonally dry forests. The results were based on the sequencing of three chloroplast intergenic spacers (psbA-trnH, trnC-ycf6 and trnStrnG2S) and the nuclear ribosomal region (nrDNA) (ITS1 + 5.8S + ITS2). We sampled 18 populations (235 individuals) in North, Central West and Southeast. The three chloroplast regions generated a fragment of 1,519 base pairs and 37 haplotypes. We found high haplotype diversity (h = 0.839) and low nucleotide diversity (π = 0.00610 SD = 0.00311) and were found. A fragment of 506 base pairs was generated for nrDNA and 14 haplotypes were identified. The haplotype diversity (h = 0.336) was lower than chloroplast diversity but nucleotide diversity (π = 0.01669 SD = 0.00857) was higher. Populations of Tabebuia rosealba are highly differentiated (FST = 0. 684; p = 0.001) with low gene flow (Nm < 1.0) among all population pairs. Our results also showed significant population reduction followed by expansion (Mismatch Distribution SSD = 0.20746; p = 0.0002, Tajima D = - 1.766; p = 0.008, Fs = - 23.702; p = 0.001), and the Extended Bayesian Skyline Plot (EBSP) also showed population reduction. Coalescent dated tree showed an ancient time to most recent ancestor (TMRCA) dated from ~4.9 Ma (CI 95% 1.9 Ma) in the Pliocene. Both the median-joining network and the coalescent tree showed evidences of incomplete lineage sorting. Our data show that the current pattern of diversity found so far is in consonance with a wide distribution of this species in the past, strongly suggesting that the climate changes of the Quaternary Period had strongly influenced the genetic diversity pattern and the geographical distribution of the species. |
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Collevatti, Rosane Garciahttp://lattes.cnpq.br/9979596352166630http://lattes.cnpq.br/9975608697544074Melo, Warita Alves de2016-05-20T14:02:53Z2014-09-29MELO, W. A. Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae). 2014. 66 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/5594ark:/38995/001300000b14mTabebuia roseoalba (RIDL.) Sandwith (Bignoniaceae) is widely distributed in Neotropical seasonally dry forests, occurring mainly from Northeast towards the Central West and Southeast Brazil, and also in Paraguay, Bolivia and Peru. The phylogeography of this species may help us to understand how historical events influenced its genetic diversity and in the current geographic distribution of seasonally dry forests. The results were based on the sequencing of three chloroplast intergenic spacers (psbA-trnH, trnC-ycf6 and trnStrnG2S) and the nuclear ribosomal region (nrDNA) (ITS1 + 5.8S + ITS2). We sampled 18 populations (235 individuals) in North, Central West and Southeast. The three chloroplast regions generated a fragment of 1,519 base pairs and 37 haplotypes. We found high haplotype diversity (h = 0.839) and low nucleotide diversity (π = 0.00610 SD = 0.00311) and were found. A fragment of 506 base pairs was generated for nrDNA and 14 haplotypes were identified. The haplotype diversity (h = 0.336) was lower than chloroplast diversity but nucleotide diversity (π = 0.01669 SD = 0.00857) was higher. Populations of Tabebuia rosealba are highly differentiated (FST = 0. 684; p = 0.001) with low gene flow (Nm < 1.0) among all population pairs. Our results also showed significant population reduction followed by expansion (Mismatch Distribution SSD = 0.20746; p = 0.0002, Tajima D = - 1.766; p = 0.008, Fs = - 23.702; p = 0.001), and the Extended Bayesian Skyline Plot (EBSP) also showed population reduction. Coalescent dated tree showed an ancient time to most recent ancestor (TMRCA) dated from ~4.9 Ma (CI 95% 1.9 Ma) in the Pliocene. Both the median-joining network and the coalescent tree showed evidences of incomplete lineage sorting. Our data show that the current pattern of diversity found so far is in consonance with a wide distribution of this species in the past, strongly suggesting that the climate changes of the Quaternary Period had strongly influenced the genetic diversity pattern and the geographical distribution of the species.Tabebuia roseoalba (RIDL.) Sandwith (Bignoniaceae) é amplamente distribuída em florestas estacionais semideciduais e deciduais neotropicais, do Nordeste para o Centro- Oeste e Sudeste do Brasil, sendo também encontrada no Paraguai, Bolívia e Peru. Conhecer o padrão filogeográfico desta espécie nos ajuda a entender quais eventos históricos influenciaram na atual distribuição geográfica das florestas estacionais. Sendo assim, estamos interessados em compreender os efeitos das mudanças climáticas do período quaternário sobre os atuais padrões de diversidade genética e distribuição geográfica da espécie T. roseoalba e das florestas estacionais. Os nossos resultados foram baseados em três regiões intergênicas cloroplastidiais (psbA-trnH, trnC-ycf6 e trnStrnG2S) e uma região ribossômica nuclear (nrDNA) (ITS1 + 5.8S + ITS2). Foram amostrados 235 indivíduos distribuídos em 18 populações coletadas nas regiões Norte, Centro-Oeste e Sudeste. As três regiões cloroplastidiais concatenadas geraram um fragmento de 1519 pares de bases, a diversidade haplotípica foi alta (h = 0,839) e a diversidade nucleotídica foi baixa (π = 0,00610 +/- 0,00311) e foram encontrados 37 haplótipos. Obteve-se um fragmento de 506 pares de bases para a região nuclear, uma diversidade haplotípica menor (h = 0,336) uma diversidade nucleotídica maior (π = 0,01669+/-0,00857) e 14 haplótipos foram identificados. Encontrou-se uma alta diferenciação entre as populações (FST = 0,684; p = 0,001), demonstrando insignificativo fluxo gênico. Foi encontrado sinal de retração seguido de expansão populacional (Distribuição de diferenças par a par SSD = 0,20746, p = 0,0002; D de Tajima D = -1,766, p = 0,008; teste de Fu FS = -23,706, p = 0,001), a análise de Extended Bayesian Skyline Plot (EBSP) também foi significativa, porém o índice de Raggedness não foi significativo (r = 0,029; p = 0,999). O ancestral comum mais recente entre as linhagens foi datado a cerca de ~4,9 ± 1,9 Ma (Ma) antes do presente no Plioceno. As redes de haplótipos e a árvore de coalescência mostraram não haver relação filogenética das linhagens e o espaço geográfico, evidenciando possivelmente arranjo incompleto de linhagem. Os nossos dados mostram que o atual padrão de diversidade encontrado é condizente com uma ampla distribuição desta espécie no passado, sugerindo que as oscilações climáticas do período Quaternário teriam influenciado grandemente o padrão da diversidade genética encontrada, a distribuição geográfica da espécie e das florestas estacionais neotropicais.Submitted by Cláudia Bueno (claudiamoura18@gmail.com) on 2016-05-19T20:50:13Z No. of bitstreams: 2 Dissertação - Warita Alves de Melo - 2014.pdf: 2324180 bytes, checksum: ceadfecb6355d48562897ba5ed60e072 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2016-05-20T14:02:53Z (GMT) No. of bitstreams: 2 Dissertação - Warita Alves de Melo - 2014.pdf: 2324180 bytes, checksum: ceadfecb6355d48562897ba5ed60e072 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Made available in DSpace on 2016-05-20T14:02:53Z (GMT). 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Sandwith (Bignnoniaceae)Phylogeography and genetic structure of a seasonal forest tree neotropical Tabebuia roseoalba (RIDL.) 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dc.title.por.fl_str_mv |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
dc.title.alternative.eng.fl_str_mv |
Phylogeography and genetic structure of a seasonal forest tree neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
title |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
spellingShingle |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) Melo, Warita Alves de Coalescência cpDNA Mudanças climáticas do Quaternário Coalescence cpDNA Quaternary climatic changes GENETICA::GENETICA VEGETAL |
title_short |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
title_full |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
title_fullStr |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
title_full_unstemmed |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
title_sort |
Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae) |
author |
Melo, Warita Alves de |
author_facet |
Melo, Warita Alves de |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Collevatti, Rosane Garcia |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/9979596352166630 |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/9975608697544074 |
dc.contributor.author.fl_str_mv |
Melo, Warita Alves de |
contributor_str_mv |
Collevatti, Rosane Garcia |
dc.subject.por.fl_str_mv |
Coalescência cpDNA Mudanças climáticas do Quaternário |
topic |
Coalescência cpDNA Mudanças climáticas do Quaternário Coalescence cpDNA Quaternary climatic changes GENETICA::GENETICA VEGETAL |
dc.subject.eng.fl_str_mv |
Coalescence cpDNA Quaternary climatic changes |
dc.subject.cnpq.fl_str_mv |
GENETICA::GENETICA VEGETAL |
description |
Tabebuia roseoalba (RIDL.) Sandwith (Bignoniaceae) is widely distributed in Neotropical seasonally dry forests, occurring mainly from Northeast towards the Central West and Southeast Brazil, and also in Paraguay, Bolivia and Peru. The phylogeography of this species may help us to understand how historical events influenced its genetic diversity and in the current geographic distribution of seasonally dry forests. The results were based on the sequencing of three chloroplast intergenic spacers (psbA-trnH, trnC-ycf6 and trnStrnG2S) and the nuclear ribosomal region (nrDNA) (ITS1 + 5.8S + ITS2). We sampled 18 populations (235 individuals) in North, Central West and Southeast. The three chloroplast regions generated a fragment of 1,519 base pairs and 37 haplotypes. We found high haplotype diversity (h = 0.839) and low nucleotide diversity (π = 0.00610 SD = 0.00311) and were found. A fragment of 506 base pairs was generated for nrDNA and 14 haplotypes were identified. The haplotype diversity (h = 0.336) was lower than chloroplast diversity but nucleotide diversity (π = 0.01669 SD = 0.00857) was higher. Populations of Tabebuia rosealba are highly differentiated (FST = 0. 684; p = 0.001) with low gene flow (Nm < 1.0) among all population pairs. Our results also showed significant population reduction followed by expansion (Mismatch Distribution SSD = 0.20746; p = 0.0002, Tajima D = - 1.766; p = 0.008, Fs = - 23.702; p = 0.001), and the Extended Bayesian Skyline Plot (EBSP) also showed population reduction. Coalescent dated tree showed an ancient time to most recent ancestor (TMRCA) dated from ~4.9 Ma (CI 95% 1.9 Ma) in the Pliocene. Both the median-joining network and the coalescent tree showed evidences of incomplete lineage sorting. Our data show that the current pattern of diversity found so far is in consonance with a wide distribution of this species in the past, strongly suggesting that the climate changes of the Quaternary Period had strongly influenced the genetic diversity pattern and the geographical distribution of the species. |
publishDate |
2014 |
dc.date.issued.fl_str_mv |
2014-09-29 |
dc.date.accessioned.fl_str_mv |
2016-05-20T14:02:53Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
MELO, W. A. Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae). 2014. 66 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/5594 |
dc.identifier.dark.fl_str_mv |
ark:/38995/001300000b14m |
identifier_str_mv |
MELO, W. A. Filogeografia e estrutura genética de uma árvore de floresta estacional neotropical Tabebuia roseoalba (RIDL.) Sandwith (Bignnoniaceae). 2014. 66 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014. ark:/38995/001300000b14m |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/5594 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.program.fl_str_mv |
-7235106986317239737 |
dc.relation.confidence.fl_str_mv |
600 600 600 600 |
dc.relation.department.fl_str_mv |
-3872772117827373404 |
dc.relation.cnpq.fl_str_mv |
-7397920248419280716 |
dc.relation.sponsorship.fl_str_mv |
2075167498588264571 |
dc.rights.driver.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Goiás |
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Programa de Pós-graduação em Genetica e Biologia Molecular |
dc.publisher.initials.fl_str_mv |
UFG |
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Brasil |
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Instituto de Ciências Biológicas - ICB (RG) |
publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.source.none.fl_str_mv |
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Repositório Institucional da UFG |
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Repositório Institucional da UFG |
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