Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/9028 |
Resumo: | In Brazil, the history of sugarcane is related to the social, economic and politic country development. Sugarcane cultivation is considered as the first organized economic activity in the country. The main purpose of sugarcane cultivation is for sugar and biofuel production, but in recent years the energy production from its biomass has also been explored, increasing the attention for this crop. Modern cultivated sugarcane varieties are hybrids from interspecific crosses between S. officinarum and S. spontaneum. The genetic breeding has given many contributions to sugarcane production and exploration, by the development of superior genotypes. The main sources of variability used in breeding programs are the germplasm banks. However, to explore these resources efficiently it is necessary to have basic information on the available levels of genetic diversity and on its structure, to support decisions on how they can be used in breeding programs. The purpose of this work was to characterize the genetic diversity and structure of a base population from the Ridesa/UFG sugarcane breeding program. A sample of 160 sugarcane clones were genotyped using 37,914 SNP markers. The population showed medium levels of genetic diversity. The average Nei’s gene diversity index was estimated to be 0,173, while the medium observed heterozygosity was a little higher (0,236). The genetic divergence, estimated by Roger’s modified distance varied from 0,20 to 0,30. SNP markers were efficient to identify individuals that are genetic divergent or similar, even without genealogy information. The population structure analysis, performed with the software Structure, suggested the existence of two clusters. Each clone had a fraction of its genome inside these two clusters, corroborating the fact that modern sugarcane cultivars are essentially hybrids. Our results suggest that, given the low level of genetic structure among clones, from the breeding programs standpoint, the evaluated population can be managed as weakly structured, although some small groups, including a small number of clones, had been detected. Among the evaluated clones, the least divergent pairs were those formed by the genotypes 023 and 011, and 066 and 036. The most divergent pairs were formed by the clones 131 and 084, and 131 and 063. |
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Coelho, Alexandre Siqueira Guedeshttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4723538Z2Coelho, Alexandre Siqueira GuedesNunes, Camila de Marillac CostaLopes, Lorennahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4364179U9Carneiro, Karla da Silva2018-11-01T15:53:42Z2017-12-21CARNEIRO, K. S. Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG. 2017. 79 f. Dissertação (Mestrado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2017.http://repositorio.bc.ufg.br/tede/handle/tede/9028In Brazil, the history of sugarcane is related to the social, economic and politic country development. Sugarcane cultivation is considered as the first organized economic activity in the country. The main purpose of sugarcane cultivation is for sugar and biofuel production, but in recent years the energy production from its biomass has also been explored, increasing the attention for this crop. Modern cultivated sugarcane varieties are hybrids from interspecific crosses between S. officinarum and S. spontaneum. The genetic breeding has given many contributions to sugarcane production and exploration, by the development of superior genotypes. The main sources of variability used in breeding programs are the germplasm banks. However, to explore these resources efficiently it is necessary to have basic information on the available levels of genetic diversity and on its structure, to support decisions on how they can be used in breeding programs. The purpose of this work was to characterize the genetic diversity and structure of a base population from the Ridesa/UFG sugarcane breeding program. A sample of 160 sugarcane clones were genotyped using 37,914 SNP markers. The population showed medium levels of genetic diversity. The average Nei’s gene diversity index was estimated to be 0,173, while the medium observed heterozygosity was a little higher (0,236). The genetic divergence, estimated by Roger’s modified distance varied from 0,20 to 0,30. SNP markers were efficient to identify individuals that are genetic divergent or similar, even without genealogy information. The population structure analysis, performed with the software Structure, suggested the existence of two clusters. Each clone had a fraction of its genome inside these two clusters, corroborating the fact that modern sugarcane cultivars are essentially hybrids. Our results suggest that, given the low level of genetic structure among clones, from the breeding programs standpoint, the evaluated population can be managed as weakly structured, although some small groups, including a small number of clones, had been detected. Among the evaluated clones, the least divergent pairs were those formed by the genotypes 023 and 011, and 066 and 036. The most divergent pairs were formed by the clones 131 and 084, and 131 and 063.A história da cana-de-açúcar está intimamente relacionada com o desenvolvimento social, econômico e político do Brasil, sendo considerada por muitos como a primeira atividade economicamente organizada no país. A cana-de-açúcar é matéria prima para a produção de açúcar e etanol, tendo sido também utilizada nos últimos anos para a produção de energia. As modernas variedades de cana-de-açúcar são híbridos poliploides decorrentes do cruzamento interespecífico entre S. officinarum e S. spontaneum. O melhoramento genético tem contribuído de maneira importante para o setor, pelo desenvolvimento de genótipos superiores. O ponto de partida destes programas de melhoramento são os bancos de germoplasma. Para que esse recurso seja explorado de forma eficiente é preciso que as informações básicas, que irão permitir o dimensionamento da magnitude da diversidade genética disponível, sejam geradas. O presente trabalho teve como objetivo realizar a caracterização genética molecular de uma população base do programa de melhoramento genético da Ridesa/UFG, representada por uma amostra de 160 clones, pela utilização de 37.914 marcadores SNPs. A diversidade genética revelada por estes marcadores, em que a dosagem de cada alelo não é detectável em cada genótipo, em decorrência da poliploidia, foi de magnitude intermediária, com índice de diversidade genética de Nei estimado em 0,173. A estimativa de heterozigosidade média observada apresentou valor mais elevado 0,236. As estimativas de divergência genética obtidas pela distância de Rogers modificada por Wright variaram entre 0,20 e 0,30. Na análise de agrupamento foram identificados sete grupos de clones. O uso de SNPs foi eficiente em identificar pares de indivíduos geneticamente divergentes, mesmo sem dispor de informações de genealogia. A análise de estruturação genética pelo software Structure sugeriu, a princípio, a existência de dois grupos. Cada clone, no entanto, se revelou constituído por uma mistura relativamente homogênea dos dois grupos identificados, confirmando a natureza híbrida das cultivares modernas de cana-de-açúcar. Estes resultados sugerem que, dada o reduzido nível de estruturação da diversidade genética ao nível de clones, do ponto de vista de melhoramento, a população possa ser considerada como um grupo fracamente estruturado, com a presença de poucos grupos envolvendo pequeno número de genótipos. Entre os clones avaliados, os pares menos divergentes são constituídos pelos genótipos 023 e 011, e 066 e 036. 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No. of bitstreams: 2 Dissertação - Karla da Silva Carneiro - 2017.pdf: 3925004 bytes, checksum: 34919ba64c10b1240fa3e19cf38d927a (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2017-12-21Financiadora de Estudos e Projetos- Finepapplication/pdfporUniversidade Federal de GoiásPrograma de Pós-graduação em Genética e Melhoramento de Plantas (EA)UFGBrasilEscola de Agronomia - EA (RG)http://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessSaccharumDiversidade genéticaMarcador molecularDivergência genéticaSNPSaccharumGenetic diversityMolecular markerSNPGENETICA::GENETICA VEGETALCaracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFGGenetic characterization of a base population from the Ridesa/UFG sugarcane breeding programinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-6265679607231828330600600600600-6046953723502374070-7397920248419280716-8370082027677193632reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGLICENSElicense.txtlicense.txttext/plain; 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dc.title.eng.fl_str_mv |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
dc.title.alternative.eng.fl_str_mv |
Genetic characterization of a base population from the Ridesa/UFG sugarcane breeding program |
title |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
spellingShingle |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG Carneiro, Karla da Silva Saccharum Diversidade genética Marcador molecular Divergência genética SNP Saccharum Genetic diversity Molecular marker SNP GENETICA::GENETICA VEGETAL |
title_short |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
title_full |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
title_fullStr |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
title_full_unstemmed |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
title_sort |
Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG |
author |
Carneiro, Karla da Silva |
author_facet |
Carneiro, Karla da Silva |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Coelho, Alexandre Siqueira Guedes |
dc.contributor.advisor1Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4723538Z2 |
dc.contributor.referee1.fl_str_mv |
Coelho, Alexandre Siqueira Guedes |
dc.contributor.referee2.fl_str_mv |
Nunes, Camila de Marillac Costa |
dc.contributor.referee3.fl_str_mv |
Lopes, Lorenna |
dc.contributor.authorLattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4364179U9 |
dc.contributor.author.fl_str_mv |
Carneiro, Karla da Silva |
contributor_str_mv |
Coelho, Alexandre Siqueira Guedes Coelho, Alexandre Siqueira Guedes Nunes, Camila de Marillac Costa Lopes, Lorenna |
dc.subject.por.fl_str_mv |
Saccharum Diversidade genética Marcador molecular Divergência genética SNP |
topic |
Saccharum Diversidade genética Marcador molecular Divergência genética SNP Saccharum Genetic diversity Molecular marker SNP GENETICA::GENETICA VEGETAL |
dc.subject.eng.fl_str_mv |
Saccharum Genetic diversity Molecular marker SNP |
dc.subject.cnpq.fl_str_mv |
GENETICA::GENETICA VEGETAL |
description |
In Brazil, the history of sugarcane is related to the social, economic and politic country development. Sugarcane cultivation is considered as the first organized economic activity in the country. The main purpose of sugarcane cultivation is for sugar and biofuel production, but in recent years the energy production from its biomass has also been explored, increasing the attention for this crop. Modern cultivated sugarcane varieties are hybrids from interspecific crosses between S. officinarum and S. spontaneum. The genetic breeding has given many contributions to sugarcane production and exploration, by the development of superior genotypes. The main sources of variability used in breeding programs are the germplasm banks. However, to explore these resources efficiently it is necessary to have basic information on the available levels of genetic diversity and on its structure, to support decisions on how they can be used in breeding programs. The purpose of this work was to characterize the genetic diversity and structure of a base population from the Ridesa/UFG sugarcane breeding program. A sample of 160 sugarcane clones were genotyped using 37,914 SNP markers. The population showed medium levels of genetic diversity. The average Nei’s gene diversity index was estimated to be 0,173, while the medium observed heterozygosity was a little higher (0,236). The genetic divergence, estimated by Roger’s modified distance varied from 0,20 to 0,30. SNP markers were efficient to identify individuals that are genetic divergent or similar, even without genealogy information. The population structure analysis, performed with the software Structure, suggested the existence of two clusters. Each clone had a fraction of its genome inside these two clusters, corroborating the fact that modern sugarcane cultivars are essentially hybrids. Our results suggest that, given the low level of genetic structure among clones, from the breeding programs standpoint, the evaluated population can be managed as weakly structured, although some small groups, including a small number of clones, had been detected. Among the evaluated clones, the least divergent pairs were those formed by the genotypes 023 and 011, and 066 and 036. The most divergent pairs were formed by the clones 131 and 084, and 131 and 063. |
publishDate |
2017 |
dc.date.issued.fl_str_mv |
2017-12-21 |
dc.date.accessioned.fl_str_mv |
2018-11-01T15:53:42Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
CARNEIRO, K. S. Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG. 2017. 79 f. Dissertação (Mestrado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2017. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/9028 |
identifier_str_mv |
CARNEIRO, K. S. Caracterização genética de uma população base do programa de melhoramento de cana-de-açúcar da Ridesa/UFG. 2017. 79 f. Dissertação (Mestrado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2017. |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/9028 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.program.fl_str_mv |
-6265679607231828330 |
dc.relation.confidence.fl_str_mv |
600 600 600 600 |
dc.relation.department.fl_str_mv |
-6046953723502374070 |
dc.relation.cnpq.fl_str_mv |
-7397920248419280716 |
dc.relation.sponsorship.fl_str_mv |
-8370082027677193632 |
dc.rights.driver.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.publisher.program.fl_str_mv |
Programa de Pós-graduação em Genética e Melhoramento de Plantas (EA) |
dc.publisher.initials.fl_str_mv |
UFG |
dc.publisher.country.fl_str_mv |
Brasil |
dc.publisher.department.fl_str_mv |
Escola de Agronomia - EA (RG) |
publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFG instname:Universidade Federal de Goiás (UFG) instacron:UFG |
instname_str |
Universidade Federal de Goiás (UFG) |
instacron_str |
UFG |
institution |
UFG |
reponame_str |
Repositório Institucional da UFG |
collection |
Repositório Institucional da UFG |
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bitstream.checksum.fl_str_mv |
bd3efa91386c1718a7f26a329fdcb468 4afdbb8c545fd630ea7db775da747b2f d41d8cd98f00b204e9800998ecf8427e d41d8cd98f00b204e9800998ecf8427e 34919ba64c10b1240fa3e19cf38d927a |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFG - Universidade Federal de Goiás (UFG) |
repository.mail.fl_str_mv |
tasesdissertacoes.bc@ufg.br |
_version_ |
1798044330743562240 |