Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
dARK ID: | ark:/38995/00130000096bq |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/7161 |
Resumo: | The aim of this study was to validate molecular markers specifically associated with alleles of the Co-4 gene that controls the reaction to anthracnose of common bean, in particular the Co- 42 allele, and foment the integration of these markers in breeding programs aimed at developing resistant cultivars. For this, we evaluated 261 individuals F2 and 197 F2:3 progenies coming from crosses between SEL 1308 (carrier of Co-42 allele) and BRS Cometa. The studies confirm that the inheritance of reaction to anthracnose in SEL1308, using race 73 of Colletotrichum lindemuthianum, it is conditioned by an allele with complete dominance. In all, 15 markers were analyzed, ten STS (Sequence-Tagged Sites) and two SSR (Simple Sequence Repeat), recently identified by the Embrapa research group, and three SCAR (Sequence Characterized Amplified Regions) previously reported in the literature. Of these, 13 were polymorphic between the parents and segregated in the expected proportions to generations analyzed (3:1 or 1:2:1). Among the markers linked in repulsion phase, six STS (P8283-V1, P8284 -V1, P8285-V2, P8286-V1, P8286-V2 and P8286-V3) co-segregated at a distance of 2,64 cM from the allele Co-42 and 0,0 cM apart. As regards the SCAR markers, it was found that all are linked in coupling phase of the Co-42 allele at distances ranging from 2,93 cM (SAS13) at 6,42 cM (SH18). Of codominant markers, the STS P8286-V6 was mapped closest to Co-42 allele at a distance of 2,58 cM. Thus, the STS tested are excellent tools markers for assisted selection of genotypes resistant to anthracnose, since that present the highest selection efficiency estimates (84 - 99%) and the detection of plants carriers of different alleles of the Co-4 gene. However, only the SCAR SH18 possible the specific breakdown of Co- 42 allele, despite having less selection efficiency (85%) compared to the other analyzed markers. Therefore, it is recommend the combined or sequential use of P8286-V6 and SH18 markers for Co-42 selection at the expense of other alleles of the Co-4 gene. As for the selection of resistant genotypes in populations in which only the Co-42 allele is present, it is suggested to use only the P8286-V6 marker, which stands out for being codominant and strongly associated with the resistance allele. From a practical standpoint, the molecular markers validated in this study have shown great potential for use in the development of common bean cultivars resistant to anthracnose, being affordable to laboratories with different levels of infrastructure and highly efficient in monitoring genotypes carriers of resistance alleles of the loco Co-4. |
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Pereira, Helton Santoshttp://lattes.cnpq.br/0729719587905292Souza, Thiago Lívio Pessoa Oliveira dehttp://lattes.cnpq.br/9650183308779143Melo, Leonardo CunhaSousa, Lorenna Lopes deSouza, Thiago Lívio Pessoa Oliveira dehttp://lattes.cnpq.br/4833812056629931Mota, Ana Paula Simplício2017-04-18T13:21:34Z2015-10-28MOTA, A. P. S. Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum. 2015. 78 f. Dissertação (Mestrado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2015.http://repositorio.bc.ufg.br/tede/handle/tede/7161ark:/38995/00130000096bqThe aim of this study was to validate molecular markers specifically associated with alleles of the Co-4 gene that controls the reaction to anthracnose of common bean, in particular the Co- 42 allele, and foment the integration of these markers in breeding programs aimed at developing resistant cultivars. For this, we evaluated 261 individuals F2 and 197 F2:3 progenies coming from crosses between SEL 1308 (carrier of Co-42 allele) and BRS Cometa. The studies confirm that the inheritance of reaction to anthracnose in SEL1308, using race 73 of Colletotrichum lindemuthianum, it is conditioned by an allele with complete dominance. In all, 15 markers were analyzed, ten STS (Sequence-Tagged Sites) and two SSR (Simple Sequence Repeat), recently identified by the Embrapa research group, and three SCAR (Sequence Characterized Amplified Regions) previously reported in the literature. Of these, 13 were polymorphic between the parents and segregated in the expected proportions to generations analyzed (3:1 or 1:2:1). Among the markers linked in repulsion phase, six STS (P8283-V1, P8284 -V1, P8285-V2, P8286-V1, P8286-V2 and P8286-V3) co-segregated at a distance of 2,64 cM from the allele Co-42 and 0,0 cM apart. As regards the SCAR markers, it was found that all are linked in coupling phase of the Co-42 allele at distances ranging from 2,93 cM (SAS13) at 6,42 cM (SH18). Of codominant markers, the STS P8286-V6 was mapped closest to Co-42 allele at a distance of 2,58 cM. Thus, the STS tested are excellent tools markers for assisted selection of genotypes resistant to anthracnose, since that present the highest selection efficiency estimates (84 - 99%) and the detection of plants carriers of different alleles of the Co-4 gene. However, only the SCAR SH18 possible the specific breakdown of Co- 42 allele, despite having less selection efficiency (85%) compared to the other analyzed markers. Therefore, it is recommend the combined or sequential use of P8286-V6 and SH18 markers for Co-42 selection at the expense of other alleles of the Co-4 gene. As for the selection of resistant genotypes in populations in which only the Co-42 allele is present, it is suggested to use only the P8286-V6 marker, which stands out for being codominant and strongly associated with the resistance allele. From a practical standpoint, the molecular markers validated in this study have shown great potential for use in the development of common bean cultivars resistant to anthracnose, being affordable to laboratories with different levels of infrastructure and highly efficient in monitoring genotypes carriers of resistance alleles of the loco Co-4.O objetivo desse estudo foi validar marcadores moleculares especificamente associados aos alelos do gene Co-4 que controla a reação à antracnose do feijoeiro-comum, em particular ao alelo Co-42, e fomentar a integração destes marcadores a programas de melhoramento visando ao desenvolvimento de cultivares resistentes. Para isso, foram avaliados 261 indivíduos F2 e 197 progênies F2:3, provenientes de cruzamentos entre SEL 1308 (portadora do alelo Co-42) e BRS Cometa. Os estudos confirmaram que a herança da reação à antracnose em SEL 1308, usando a raça 73 de Colletotrichum lindemuthianum, é condicionada por um alelo com dominância completa. Ao todo, foram analisados 15 marcadores, sendo dez Sequence-Tagged Sites (Sítios Marcados por Sequências) e duas Simple Sequence Repeat (Sequências simples repetidas), identificadas recentemente pelo grupo de pesquisa da Embrapa, e três Sequence Characterized Amplified Regions (Regiões Amplificadas Caracterizadas por Sequências) previamente relatados na literatura. Destes, 13 foram polimórficos entre os genitores e segregaram nas proporções esperadas para as gerações analisadas (3:1 ou 1:2:1). Dentre os marcadores ligados em fase de repulsão, seis STS (P8283-V1, P8284-V1, P8285-V2, P8286-V1, P8286-V2 e P8286-V3) co-segregaram a uma distância de 2,64 cM do alelo Co-42 e a 0,0 cM entre si. No que se refere aos marcadores SCAR, constatou-se que todos estão ligados em fase de acoplamento ao alelo Co-42, a distâncias que variaram de 2,93 cM (SAS13) a 6,42 cM (SH18). Dos marcadores codominantes, o STS P8286-V6 foi mapeado como mais próximo do alelo Co-42, a uma distância de 2,58 cM. Dessa forma, os marcadores STS testados constituem excelentes ferramentas para a seleção assistida de genótipos resistentes à antracnose, visto que apresentaram as maiores estimativas de eficiência de seleção (84 a 99%) e a detecção de plantas portadoras dos diferentes alelos do gene Co-4. Contudo, somente o SCAR SH18 possibilitou a discriminação específica do alelo Co-42, apesar de apresentar menor eficiência de seleção (85%) em comparação aos demais marcadores analisados. Diante disso, recomenda-se a utilização combinada ou sequencial dos marcadores P8286-V6 e SH18 para seleção do Co-42 em detrimento dos demais alelos do gene Co-4. Já para a seleção de genótipos resistentes em populações nas quais somente o alelo Co-42 está presente, sugerese a utilização apenas do marcador P8286-V6, que se destaca por ser codominante e fortemente associado ao alelo de resistência. Do ponto de vista prático, os marcadores moleculares validados neste estudo demonstraram grande potencial para utilização no desenvolvimento de cultivares feijoeiro-comum resistentes à antracnose, por serem acessíveis a laboratórios com diferentes níveis de infraestrutura e altamente eficientes no monitoramento de genótipos portadores de alelos de resistência para o loco Co-4.Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2017-04-18T13:21:11Z No. of bitstreams: 2 Dissertação - Ana Paula Simplício Mota - 2015.pdf: 2622408 bytes, checksum: 964fc3216d1a8c8e5e27bc1ef2a5d5be (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2017-04-18T13:21:34Z (GMT) No. of bitstreams: 2 Dissertação - Ana Paula Simplício Mota - 2015.pdf: 2622408 bytes, checksum: 964fc3216d1a8c8e5e27bc1ef2a5d5be (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2017-04-18T13:21:34Z (GMT). No. of bitstreams: 2 Dissertação - Ana Paula Simplício Mota - 2015.pdf: 2622408 bytes, checksum: 964fc3216d1a8c8e5e27bc1ef2a5d5be (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2015-10-28Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESapplication/pdfporUniversidade Federal de GoiásPrograma de Pós-graduação em Genética e Melhoramento de Plantas (EAEA)UFGBrasilEscola de Agronomia e Engenharia de Alimentos - EAEA (RG)http://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessPhaseolus vulgaris L.Diseases of the common beanLinkage analysisDoenças do feijoeiro-comumAnálise de ligaçãoFITOTECNIA::MELHORAMENTO VEGETALMarcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comumSSR and STS markers linked to Co-4 gene that controls reactions to anthracnose of common beaninfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-3325099404361873119600600600600450068469572792842626156072994701319672075167498588264571reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGLICENSElicense.txtlicense.txttext/plain; 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dc.title.por.fl_str_mv |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
dc.title.alternative.eng.fl_str_mv |
SSR and STS markers linked to Co-4 gene that controls reactions to anthracnose of common bean |
title |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
spellingShingle |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum Mota, Ana Paula Simplício Phaseolus vulgaris L. Diseases of the common bean Linkage analysis Doenças do feijoeiro-comum Análise de ligação FITOTECNIA::MELHORAMENTO VEGETAL |
title_short |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
title_full |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
title_fullStr |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
title_full_unstemmed |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
title_sort |
Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum |
author |
Mota, Ana Paula Simplício |
author_facet |
Mota, Ana Paula Simplício |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Pereira, Helton Santos |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/0729719587905292 |
dc.contributor.advisor-co1.fl_str_mv |
Souza, Thiago Lívio Pessoa Oliveira de |
dc.contributor.advisor-co1Lattes.fl_str_mv |
http://lattes.cnpq.br/9650183308779143 |
dc.contributor.referee1.fl_str_mv |
Melo, Leonardo Cunha |
dc.contributor.referee2.fl_str_mv |
Sousa, Lorenna Lopes de |
dc.contributor.referee3.fl_str_mv |
Souza, Thiago Lívio Pessoa Oliveira de |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/4833812056629931 |
dc.contributor.author.fl_str_mv |
Mota, Ana Paula Simplício |
contributor_str_mv |
Pereira, Helton Santos Souza, Thiago Lívio Pessoa Oliveira de Melo, Leonardo Cunha Sousa, Lorenna Lopes de Souza, Thiago Lívio Pessoa Oliveira de |
dc.subject.eng.fl_str_mv |
Phaseolus vulgaris L. Diseases of the common bean Linkage analysis |
topic |
Phaseolus vulgaris L. Diseases of the common bean Linkage analysis Doenças do feijoeiro-comum Análise de ligação FITOTECNIA::MELHORAMENTO VEGETAL |
dc.subject.por.fl_str_mv |
Doenças do feijoeiro-comum Análise de ligação |
dc.subject.cnpq.fl_str_mv |
FITOTECNIA::MELHORAMENTO VEGETAL |
description |
The aim of this study was to validate molecular markers specifically associated with alleles of the Co-4 gene that controls the reaction to anthracnose of common bean, in particular the Co- 42 allele, and foment the integration of these markers in breeding programs aimed at developing resistant cultivars. For this, we evaluated 261 individuals F2 and 197 F2:3 progenies coming from crosses between SEL 1308 (carrier of Co-42 allele) and BRS Cometa. The studies confirm that the inheritance of reaction to anthracnose in SEL1308, using race 73 of Colletotrichum lindemuthianum, it is conditioned by an allele with complete dominance. In all, 15 markers were analyzed, ten STS (Sequence-Tagged Sites) and two SSR (Simple Sequence Repeat), recently identified by the Embrapa research group, and three SCAR (Sequence Characterized Amplified Regions) previously reported in the literature. Of these, 13 were polymorphic between the parents and segregated in the expected proportions to generations analyzed (3:1 or 1:2:1). Among the markers linked in repulsion phase, six STS (P8283-V1, P8284 -V1, P8285-V2, P8286-V1, P8286-V2 and P8286-V3) co-segregated at a distance of 2,64 cM from the allele Co-42 and 0,0 cM apart. As regards the SCAR markers, it was found that all are linked in coupling phase of the Co-42 allele at distances ranging from 2,93 cM (SAS13) at 6,42 cM (SH18). Of codominant markers, the STS P8286-V6 was mapped closest to Co-42 allele at a distance of 2,58 cM. Thus, the STS tested are excellent tools markers for assisted selection of genotypes resistant to anthracnose, since that present the highest selection efficiency estimates (84 - 99%) and the detection of plants carriers of different alleles of the Co-4 gene. However, only the SCAR SH18 possible the specific breakdown of Co- 42 allele, despite having less selection efficiency (85%) compared to the other analyzed markers. Therefore, it is recommend the combined or sequential use of P8286-V6 and SH18 markers for Co-42 selection at the expense of other alleles of the Co-4 gene. As for the selection of resistant genotypes in populations in which only the Co-42 allele is present, it is suggested to use only the P8286-V6 marker, which stands out for being codominant and strongly associated with the resistance allele. From a practical standpoint, the molecular markers validated in this study have shown great potential for use in the development of common bean cultivars resistant to anthracnose, being affordable to laboratories with different levels of infrastructure and highly efficient in monitoring genotypes carriers of resistance alleles of the loco Co-4. |
publishDate |
2015 |
dc.date.issued.fl_str_mv |
2015-10-28 |
dc.date.accessioned.fl_str_mv |
2017-04-18T13:21:34Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
MOTA, A. P. S. Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum. 2015. 78 f. Dissertação (Mestrado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2015. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/7161 |
dc.identifier.dark.fl_str_mv |
ark:/38995/00130000096bq |
identifier_str_mv |
MOTA, A. P. S. Marcadores SSR e STS ligados ao gene Co-4 que controla a reação à antracnose do feijoeiro comum. 2015. 78 f. Dissertação (Mestrado em Genética e Melhoramento de Plantas) - Universidade Federal de Goiás, Goiânia, 2015. ark:/38995/00130000096bq |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/7161 |
dc.language.iso.fl_str_mv |
por |
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Universidade Federal de Goiás |
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