Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.)
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFG |
Texto Completo: | http://repositorio.bc.ufg.br/tede/handle/tede/4544 |
Resumo: | The strong demand for hardwood drives selective logging and degradation of forests ecossystems in Brazil. Due to its wood value and predatory logging, Brazilian mahogany (Swietenia macrophylla) is at risk of extinction. Currently, its trees are protected and banned from logging by the Brazilian Institute of Environment (IBAMA). Monoculture of the Brazilian mahogany is proven unsuccessful due to the attack of the Hypsipyla grandella larvae. An alternative to Brazilian mahogany plantation is the African mahogany (Khaya ivorensis), a species with similar high valued wood properties. The Universidade Federal de Goiás in partnership with Mudas Nobres Company started a breeding program with Khaya ivorensis. The objective of this study was to evaluate the genetic diversity and divergence among 53 superior trees selected and cloned as part of the breeding strategies. Clones were selected from three different populations, planted in two farms in Pará state and originating from Ivory Coast and Tanzania populations. Twelve seedlings of Khaya senegalensis were also used as a control group in the analyses of genetic divergence. The individuals were genotyped with eight microsatellite loci developed for K. senegalensis, by capillary electrophoresis on the ABI-3100 (Applied Biosystems) platform. The software GeneMapper (Applied Biosystems) was used to genotype the alleles. The average number of alleles per locus was 5.875. The average expected heterozygosity was lower (HE = 0.563) than the average observed heterozygosity (HO = 0.738). Therefore, the average intrapopulation fixation index was negative (f = - 0.314) indicating that high inbreeding depression is decreasing the frequency of homozygous when compared to what would be expected under Hardy-Weinberg Equilibrium. The average fixation index between populations was estimated at θ = 0.008, indicating that only 0.8% of the genetic variability is due to differences between populations. The dendrogram generated from the matrix of Rogers’ genetic distance showed two distinct groups, separating the control group with K. senegalensis from the K. ivorensis selected trees. The group composed of K. ivorensis had nodes with weak bootstrap consistency indicating weak genetic structure among selected trees. The lack of genetic structure was confirmed by a Bayesian approach on the Structure (version 2.3.4) program. The genetic diversity observed within the selected breeding population is comparable to that of natural populations of African and Brazilian mahoganies. The genetic distance estimated with this work will guide the selection of divergent progenitors to be crossed. |
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Novaes, Evandrohttp://lattes.cnpq.br/0568272239145336http://lattes.cnpq.br/8118581166747557Soares, Sabrina Delgado2015-05-19T14:20:49Z2014-08-04SOARES, Sabrina Delgado. Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.). 2014. 69 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/4544The strong demand for hardwood drives selective logging and degradation of forests ecossystems in Brazil. Due to its wood value and predatory logging, Brazilian mahogany (Swietenia macrophylla) is at risk of extinction. Currently, its trees are protected and banned from logging by the Brazilian Institute of Environment (IBAMA). Monoculture of the Brazilian mahogany is proven unsuccessful due to the attack of the Hypsipyla grandella larvae. An alternative to Brazilian mahogany plantation is the African mahogany (Khaya ivorensis), a species with similar high valued wood properties. The Universidade Federal de Goiás in partnership with Mudas Nobres Company started a breeding program with Khaya ivorensis. The objective of this study was to evaluate the genetic diversity and divergence among 53 superior trees selected and cloned as part of the breeding strategies. Clones were selected from three different populations, planted in two farms in Pará state and originating from Ivory Coast and Tanzania populations. Twelve seedlings of Khaya senegalensis were also used as a control group in the analyses of genetic divergence. The individuals were genotyped with eight microsatellite loci developed for K. senegalensis, by capillary electrophoresis on the ABI-3100 (Applied Biosystems) platform. The software GeneMapper (Applied Biosystems) was used to genotype the alleles. The average number of alleles per locus was 5.875. The average expected heterozygosity was lower (HE = 0.563) than the average observed heterozygosity (HO = 0.738). Therefore, the average intrapopulation fixation index was negative (f = - 0.314) indicating that high inbreeding depression is decreasing the frequency of homozygous when compared to what would be expected under Hardy-Weinberg Equilibrium. The average fixation index between populations was estimated at θ = 0.008, indicating that only 0.8% of the genetic variability is due to differences between populations. The dendrogram generated from the matrix of Rogers’ genetic distance showed two distinct groups, separating the control group with K. senegalensis from the K. ivorensis selected trees. The group composed of K. ivorensis had nodes with weak bootstrap consistency indicating weak genetic structure among selected trees. The lack of genetic structure was confirmed by a Bayesian approach on the Structure (version 2.3.4) program. The genetic diversity observed within the selected breeding population is comparable to that of natural populations of African and Brazilian mahoganies. The genetic distance estimated with this work will guide the selection of divergent progenitors to be crossed.A forte demanda por madeira nobre impulsiona o corte seletivo de árvores e a degradação das florestas brasileiras. Devido ao extrativismo predatório, o mogno brasileiro (Swietenia macrophylla) encontra-se em risco de extinção e proibido de corte pelo IBAMA. Uma alternativa ao extrativismo e às tentativas fracassadas de plantios do mogno brasileiro é o mogno africano (Khaya ivorensis). A Universidade Federal Goiás em parceria com a empresa Mudas Nobres iniciaram pesquisas para melhoramento genético do K. ivorensis. O objetivo do presente trabalho foi estimar a diversidade e a divergência genética em 53 árvores superiores selecionada no âmbito desse programa de melhoramento. Os clones foram selecionados em três populações diferentes, plantadas em fazendas no estado do Pará a partir de populações da Costa do Marfim e Tanzânia na Africa. Foram utilizadas 12 árvores de Khaya senegalensis como um grupo controle nas análises de divergência genética. Os genótipos dos indivíduos foram obtidos com oito locos microssatélites, desenvolvidos para K. senegalensis, através de eletroforese capilar na plataforma ABI- 3100 (Applied Biosystems). O programa GeneMapper (Applied Biosystems) foi utilizado para determinar os alelos. Todos os locos foram 100% polimórficos, com número médio de alelos por loco de 5,875. A heterozigosidade esperada média foi menor (HE = 0,563) que a heterozigosidade observada média (HO = 0,738). Com isso, o índice de fixação médio intrapopulacional foi estimado em f = -0,314, indicando que a depressão por endogamia pode estar diminuindo a frequência de homozigotos quando comparado com o que seria esperado sob Equilíbrio de Hardy-Weinberg. Já o índice de fixação médio entre as populações foi estimado em θ = 0,008, indicando que somente 0,8% da variabilidade genética está estruturada entre as populações. O dendograma gerado a partir da matriz de distância genética de Rogers demonstrou dois grupos bem distintos, separando o grupo controle com K. senegalensis do restante das árvores de K. ivorensis. O grupo composto pelos K. ivorensis apresentou fraca consistência entre os nós, nos bootstraps, evidenciando a pequena diferenciação genética entre as árvores selecionadas. A falta de estruturação foi confirmada por uma abordagem Bayesiana com o programa Structure. A população de melhoramento possui diversidade genética comparável com a de populações naturais de mogno africano e mogno brasileiro. Os resultados de distância genética entre os clones, estimados neste trabalho, serão utilizados para escolha de genitores divergentes em futuros cruzamentos.Submitted by Luanna Matias (lua_matias@yahoo.com.br) on 2015-05-15T20:30:37Z No. of bitstreams: 2 Dissertação - Sabrina Delgado Soares - 2014.pdf: 10379614 bytes, checksum: ee7ac2835c171b18d788cfc5e96ddd46 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Approved for entry into archive by Luanna Matias (lua_matias@yahoo.com.br) on 2015-05-19T14:20:40Z (GMT) No. of bitstreams: 2 Dissertação - Sabrina Delgado Soares - 2014.pdf: 10379614 bytes, checksum: ee7ac2835c171b18d788cfc5e96ddd46 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Made available in DSpace on 2015-05-19T14:20:49Z (GMT). No. of bitstreams: 2 Dissertação - Sabrina Delgado Soares - 2014.pdf: 10379614 bytes, checksum: ee7ac2835c171b18d788cfc5e96ddd46 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2014-08-04Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESapplication/pdfhttp://repositorio.bc.ufg.br/tede/retrieve/20010/Disserta%c3%a7%c3%a3o%20-%20Sabrina%20Delgado%20Soares%20-%202014.pdf.jpgporUniversidade Federal de GoiásPrograma de Pós-graduação em Genetica e Biologia MolecularUFGBrasilInstituto de Ciências Biológicas - ICB (RG)http://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessKhaya ivorensisDiversidade genéticaMicrossatélitesGenetic diversityMicrosatellitesGENETICA::GENETICA MOLECULAR E DE MICROORGANISMOSDiversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.)Genetic diversity in breeding population of african mahogany (Khaya ivorensis)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-7235106986317239737600600600600-3872772117827373404-7683082515614575372075167498588264571reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGLICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://repositorio.bc.ufg.br/tede/bitstreams/76684908-25d6-4c2d-99f8-31532447b46c/downloadbd3efa91386c1718a7f26a329fdcb468MD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://repositorio.bc.ufg.br/tede/bitstreams/b74e06ce-f7f2-49de-8ad8-e89bdccb2bf0/download4afdbb8c545fd630ea7db775da747b2fMD52license_textlicense_texttext/html; charset=utf-822762http://repositorio.bc.ufg.br/tede/bitstreams/d8f7818b-e53d-4820-8454-e366382f8d1e/downloadfda13080e892f3f68def2b8b70227968MD53license_rdflicense_rdfapplication/rdf+xml; charset=utf-823148http://repositorio.bc.ufg.br/tede/bitstreams/9765a62e-511a-419c-ae46-4deaf77058a9/download9da0b6dfac957114c6a7714714b86306MD54ORIGINALDissertação - 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dc.title.por.fl_str_mv |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
dc.title.alternative.eng.fl_str_mv |
Genetic diversity in breeding population of african mahogany (Khaya ivorensis) |
title |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
spellingShingle |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) Soares, Sabrina Delgado Khaya ivorensis Diversidade genética Microssatélites Genetic diversity Microsatellites GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS |
title_short |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
title_full |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
title_fullStr |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
title_full_unstemmed |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
title_sort |
Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.) |
author |
Soares, Sabrina Delgado |
author_facet |
Soares, Sabrina Delgado |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Novaes, Evandro |
dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/0568272239145336 |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/8118581166747557 |
dc.contributor.author.fl_str_mv |
Soares, Sabrina Delgado |
contributor_str_mv |
Novaes, Evandro |
dc.subject.por.fl_str_mv |
Khaya ivorensis Diversidade genética Microssatélites |
topic |
Khaya ivorensis Diversidade genética Microssatélites Genetic diversity Microsatellites GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS |
dc.subject.eng.fl_str_mv |
Genetic diversity Microsatellites |
dc.subject.cnpq.fl_str_mv |
GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS |
description |
The strong demand for hardwood drives selective logging and degradation of forests ecossystems in Brazil. Due to its wood value and predatory logging, Brazilian mahogany (Swietenia macrophylla) is at risk of extinction. Currently, its trees are protected and banned from logging by the Brazilian Institute of Environment (IBAMA). Monoculture of the Brazilian mahogany is proven unsuccessful due to the attack of the Hypsipyla grandella larvae. An alternative to Brazilian mahogany plantation is the African mahogany (Khaya ivorensis), a species with similar high valued wood properties. The Universidade Federal de Goiás in partnership with Mudas Nobres Company started a breeding program with Khaya ivorensis. The objective of this study was to evaluate the genetic diversity and divergence among 53 superior trees selected and cloned as part of the breeding strategies. Clones were selected from three different populations, planted in two farms in Pará state and originating from Ivory Coast and Tanzania populations. Twelve seedlings of Khaya senegalensis were also used as a control group in the analyses of genetic divergence. The individuals were genotyped with eight microsatellite loci developed for K. senegalensis, by capillary electrophoresis on the ABI-3100 (Applied Biosystems) platform. The software GeneMapper (Applied Biosystems) was used to genotype the alleles. The average number of alleles per locus was 5.875. The average expected heterozygosity was lower (HE = 0.563) than the average observed heterozygosity (HO = 0.738). Therefore, the average intrapopulation fixation index was negative (f = - 0.314) indicating that high inbreeding depression is decreasing the frequency of homozygous when compared to what would be expected under Hardy-Weinberg Equilibrium. The average fixation index between populations was estimated at θ = 0.008, indicating that only 0.8% of the genetic variability is due to differences between populations. The dendrogram generated from the matrix of Rogers’ genetic distance showed two distinct groups, separating the control group with K. senegalensis from the K. ivorensis selected trees. The group composed of K. ivorensis had nodes with weak bootstrap consistency indicating weak genetic structure among selected trees. The lack of genetic structure was confirmed by a Bayesian approach on the Structure (version 2.3.4) program. The genetic diversity observed within the selected breeding population is comparable to that of natural populations of African and Brazilian mahoganies. The genetic distance estimated with this work will guide the selection of divergent progenitors to be crossed. |
publishDate |
2014 |
dc.date.issued.fl_str_mv |
2014-08-04 |
dc.date.accessioned.fl_str_mv |
2015-05-19T14:20:49Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
SOARES, Sabrina Delgado. Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.). 2014. 69 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014. |
dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/4544 |
identifier_str_mv |
SOARES, Sabrina Delgado. Diversidade genética em população de melhoramento de mogno africano (Khaya ivorensis A. Chev.). 2014. 69 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014. |
url |
http://repositorio.bc.ufg.br/tede/handle/tede/4544 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.program.fl_str_mv |
-7235106986317239737 |
dc.relation.confidence.fl_str_mv |
600 600 600 600 |
dc.relation.department.fl_str_mv |
-3872772117827373404 |
dc.relation.cnpq.fl_str_mv |
-768308251561457537 |
dc.relation.sponsorship.fl_str_mv |
2075167498588264571 |
dc.rights.driver.fl_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-nd/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.publisher.program.fl_str_mv |
Programa de Pós-graduação em Genetica e Biologia Molecular |
dc.publisher.initials.fl_str_mv |
UFG |
dc.publisher.country.fl_str_mv |
Brasil |
dc.publisher.department.fl_str_mv |
Instituto de Ciências Biológicas - ICB (RG) |
publisher.none.fl_str_mv |
Universidade Federal de Goiás |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFG instname:Universidade Federal de Goiás (UFG) instacron:UFG |
instname_str |
Universidade Federal de Goiás (UFG) |
instacron_str |
UFG |
institution |
UFG |
reponame_str |
Repositório Institucional da UFG |
collection |
Repositório Institucional da UFG |
bitstream.url.fl_str_mv |
http://repositorio.bc.ufg.br/tede/bitstreams/76684908-25d6-4c2d-99f8-31532447b46c/download http://repositorio.bc.ufg.br/tede/bitstreams/b74e06ce-f7f2-49de-8ad8-e89bdccb2bf0/download http://repositorio.bc.ufg.br/tede/bitstreams/d8f7818b-e53d-4820-8454-e366382f8d1e/download http://repositorio.bc.ufg.br/tede/bitstreams/9765a62e-511a-419c-ae46-4deaf77058a9/download http://repositorio.bc.ufg.br/tede/bitstreams/86190635-bdcc-49b8-bfa2-98a4f0cf3e19/download http://repositorio.bc.ufg.br/tede/bitstreams/e35e1f25-af7f-43df-8d52-e2e20288063d/download http://repositorio.bc.ufg.br/tede/bitstreams/2016a9c1-1b48-4bc4-8cdf-01cce057a8e7/download |
bitstream.checksum.fl_str_mv |
bd3efa91386c1718a7f26a329fdcb468 4afdbb8c545fd630ea7db775da747b2f fda13080e892f3f68def2b8b70227968 9da0b6dfac957114c6a7714714b86306 ee7ac2835c171b18d788cfc5e96ddd46 f67a5dbca0ad49bb470ffee3c20a0718 7e070c35f4dc89f98f2d418996820ef9 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFG - Universidade Federal de Goiás (UFG) |
repository.mail.fl_str_mv |
tasesdissertacoes.bc@ufg.br |
_version_ |
1798044354602860544 |